Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq465 147 2e-30
seq6 132 5e-26
seq113 102 8e-17
>seq465
Length=132516
Score = 147 bits (162), Expect = 2e-30
Identities = 426/650 (66%), Gaps = 13/650 (2%)
Strand=Plus/Plus
Query 153815 CTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCC 153874
||||| |||||| || ||| || ||| ||||| ||||||||| |||||| || ||
Sbjct 113241 CTCGCGCTCGTAACGGGTGTAGAGCTCCTCGAACTCATCGCCGTAGACGTCGGCAAGACC 113300
Query 153875 GGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAA 153934
|| |||| | || ||||| || | |||| ||| | | || || ||||||
Sbjct 113301 AGGGCACTCGTTGGGGCACATGAGTGTCCACTCGCCGTTCTCTTGCACTCGCTTCATGAA 113360
Query 153935 CAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGC-CTTGCAA--TCCTCCGCGCC 153991
||||| || | |||||| ||||| | |||||| || || | | | |||| ||
Sbjct 113361 GAGATCGGGAATCCAGAGGGCGTAGAAGAGGTCACGAGCTCGTACCTCTTCCTTACCGTG 113420
Query 153992 CATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGAC 154051
| |||||| || | || | || | | || |||||||| || || | |||||
Sbjct 113421 GTTCTTGCGT---AGGTCAAGGAAGCCGAATACATCCGCGTGCCATGGCTCGAGGTAGAT 113477
Query 154052 GGCCAGGGCACCTTTACGCTTT---CCGCCCTGATCGACGTGGCGCACCATATTGTTGAA 154108
||| | ||||| ||||| || ||||||||||||| ||| | | |||||| |
Sbjct 113478 GGCGAAAGCACCAGGGCGCTTGTTGCCACCCTGATCGACGTAGCGAGCGGTGTTGTTGTA 113537
Query 154109 GACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCC 154168
||| || | ||| || || || | | || |||||||| | || | | |||
Sbjct 113538 GACACGGAGCATCGGGATGAGACCATTGGATGTTCCGTTGGTGCCACCAATGTAGGAGCC 113597
Query 154169 GCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGC 154228
| ||| || | | ||||| || | ||||||||||| || ||| || || || |
Sbjct 113598 GGTGGCACGGATGCGGTGCACATTGAGTCCAATGCCGCCAGCGGTCTTGGAGAT--CAAC 113655
Query 154229 GCAGTCGCC--CAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAG 154286
||| || | ||| || |||||| ||||||||||| || || | | ||| | |
Sbjct 113656 GCACACGTCTTCAGTGTGTCGTAGATACCGTCGATGCTGTCCTCCTTCATGTCGATGAGG 113715
Query 154287 AAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGC 154346
|| || || |||| || || || |||||||||| || || || || || ||
Sbjct 113716 AAGCAGGATGACATCTGAGGGTTGGGCGTTCCCGCGTTGAACAGCGTAGGCGAGGCATGT 113775
Query 154347 GTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCG 154406
|| || ||||| ||| | ||| || || ||||| | || || || |||||
Sbjct 113776 GTGAAGTACTTTTGCGACATGTAGTCGTAGGTCTCAATGGCCTTCTCAATGTCTTCGCCA 113835
Query 154407 TGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456
|| ||||| | ||||| ||||||||||||||||| || || || || ||
Sbjct 113836 TGGATGCCAACGGCGACACGCATGAGCATGTGCTGTGGGCGCTCTGCAAC 113885
>seq6
Length=114070
Score = 132 bits (146), Expect = 5e-26
Identities = 347/523 (66%), Gaps = 25/523 (5%)
Strand=Plus/Plus
Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCG-AGAGCGACACCGC 52384
|| || ||| | ||||| ||||| | ||||| | ||||||||| ||| | | | | |
Sbjct 15160 GTTCCATGCATCCGCAAGAAGGCCGACTGGGCTCTCAAGTGGATCTCAGA-CAAGAACTC 15218
Query 52385 CACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAG 52444
||| | ||| | || | || ||||| || || ||||| | || || ||||
Sbjct 15219 CACTTTTGCCAACCGTCTCGTCGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGCTC 15278
Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504
|| || ||||||| | | || | | || | ||||| || || || ||| |||
Sbjct 15279 TTTCGCGTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATGCCAGGTCTTACCTTCTCCAA 15338
Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT---CTACTA--- 52558
|||| | || || || ||||| || ||||||| |||||||| ||||| || ||
Sbjct 15339 CGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACTTTGCATGCCTGCTCTTCTCTCT 15398
Query 52559 ---CAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGA 52615
||| || ||| || | || |||| | | || | | | | ||| ||
Sbjct 15399 TCTCAACACCCGC----CCCAGCAA--GGATGCCGTCAAGGCCATCA------TCACCGA 15446
Query 52616 GGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCAT 52675
||| || | || || ||||||| | || | || || || || ||||| |||||
Sbjct 15447 GGCTGTTGAGATTGAGCAGGAGTTCCTCACCGAAGCTCTCCCCTGCGCTCTGCTCGGCAT 15506
Query 52676 GAACGCGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGC 52734
||| | || | ||||||| ||||||||||||| || || || || ||| || || |
Sbjct 15507 GAATTC-CACCCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGCCTGCTGTTGGCCC 15565
Query 52735 TCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGC 52794
| || | | ||| || |||||| ||| || || || || ||| | ||||| ||||
Sbjct 15566 TTGGCAACACCAAGGTCTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGC 15625
Query 52795 TTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
| | ||||||||||||||| ||||||||||| |||||||| ||
Sbjct 15626 TCGCGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGATTA 15668
>seq113
Length=382967
Score = 102 bits (112), Expect = 8e-17
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| ||||||||||||||| | ||| || ||||| || || || || | |
Sbjct 361546 GACTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCCAGCTGCTTTCCAGCA 361605
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| |||||||| ||||||||||| ||||| || || || ||| || ||| |
Sbjct 361606 AAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTGGATCTTCGATTTGACG 361665
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | ||| |||| ||||| || || | ||| | || || ||||| || || ||
Sbjct 361666 TTGTCAATGGTATCGGATGACTCTACTTCTAGCGTGATGGTCTTTCCAGTGAGCGTCTTG 361725
Query 138601 ACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 361726 ACGAAGATCTGCAT 361739
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| |||| || | ||||| | |||||||| || ||||||||||| |
Sbjct 361741 CCTCCGCGCAGGCGCAGCACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 361800
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || |||||| || || || |||| | |||| | ||||| |||||||||||
Sbjct 361801 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGAGGA 361860
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| || || ||||| ||| || || | | || | ||||||| ||||| ||
Sbjct 361861 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATTGTGTCGGATGACTCTACT 361920
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | ||| | || || || || || || || || || ||||||||
Sbjct 361921 TCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 361967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496259478255120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |