Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq465 147 2e-30 seq6 132 5e-26 seq113 102 8e-17 >seq465 Length=132516 Score = 147 bits (162), Expect = 2e-30 Identities = 426/650 (66%), Gaps = 13/650 (2%) Strand=Plus/Plus Query 153815 CTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCC 153874 ||||| |||||| || ||| || ||| ||||| ||||||||| |||||| || || Sbjct 113241 CTCGCGCTCGTAACGGGTGTAGAGCTCCTCGAACTCATCGCCGTAGACGTCGGCAAGACC 113300 Query 153875 GGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAA 153934 || |||| | || ||||| || | |||| ||| | | || || |||||| Sbjct 113301 AGGGCACTCGTTGGGGCACATGAGTGTCCACTCGCCGTTCTCTTGCACTCGCTTCATGAA 113360 Query 153935 CAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGC-CTTGCAA--TCCTCCGCGCC 153991 ||||| || | |||||| ||||| | |||||| || || | | | |||| || Sbjct 113361 GAGATCGGGAATCCAGAGGGCGTAGAAGAGGTCACGAGCTCGTACCTCTTCCTTACCGTG 113420 Query 153992 CATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGAC 154051 | |||||| || | || | || | | || |||||||| || || | ||||| Sbjct 113421 GTTCTTGCGT---AGGTCAAGGAAGCCGAATACATCCGCGTGCCATGGCTCGAGGTAGAT 113477 Query 154052 GGCCAGGGCACCTTTACGCTTT---CCGCCCTGATCGACGTGGCGCACCATATTGTTGAA 154108 ||| | ||||| ||||| || ||||||||||||| ||| | | |||||| | Sbjct 113478 GGCGAAAGCACCAGGGCGCTTGTTGCCACCCTGATCGACGTAGCGAGCGGTGTTGTTGTA 113537 Query 154109 GACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCC 154168 ||| || | ||| || || || | | || |||||||| | || | | ||| Sbjct 113538 GACACGGAGCATCGGGATGAGACCATTGGATGTTCCGTTGGTGCCACCAATGTAGGAGCC 113597 Query 154169 GCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGC 154228 | ||| || | | ||||| || | ||||||||||| || ||| || || || | Sbjct 113598 GGTGGCACGGATGCGGTGCACATTGAGTCCAATGCCGCCAGCGGTCTTGGAGAT--CAAC 113655 Query 154229 GCAGTCGCC--CAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAG 154286 ||| || | ||| || |||||| ||||||||||| || || | | ||| | | Sbjct 113656 GCACACGTCTTCAGTGTGTCGTAGATACCGTCGATGCTGTCCTCCTTCATGTCGATGAGG 113715 Query 154287 AAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGC 154346 || || || |||| || || || |||||||||| || || || || || || Sbjct 113716 AAGCAGGATGACATCTGAGGGTTGGGCGTTCCCGCGTTGAACAGCGTAGGCGAGGCATGT 113775 Query 154347 GTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCG 154406 || || ||||| ||| | ||| || || ||||| | || || || ||||| Sbjct 113776 GTGAAGTACTTTTGCGACATGTAGTCGTAGGTCTCAATGGCCTTCTCAATGTCTTCGCCA 113835 Query 154407 TGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456 || ||||| | ||||| ||||||||||||||||| || || || || || Sbjct 113836 TGGATGCCAACGGCGACACGCATGAGCATGTGCTGTGGGCGCTCTGCAAC 113885 >seq6 Length=114070 Score = 132 bits (146), Expect = 5e-26 Identities = 347/523 (66%), Gaps = 25/523 (5%) Strand=Plus/Plus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCG-AGAGCGACACCGC 52384 || || ||| | ||||| ||||| | ||||| | ||||||||| ||| | | | | | Sbjct 15160 GTTCCATGCATCCGCAAGAAGGCCGACTGGGCTCTCAAGTGGATCTCAGA-CAAGAACTC 15218 Query 52385 CACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAG 52444 ||| | ||| | || | || ||||| || || ||||| | || || |||| Sbjct 15219 CACTTTTGCCAACCGTCTCGTCGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGCTC 15278 Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504 || || ||||||| | | || | | || | ||||| || || || ||| ||| Sbjct 15279 TTTCGCGTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATGCCAGGTCTTACCTTCTCCAA 15338 Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT---CTACTA--- 52558 |||| | || || || ||||| || ||||||| |||||||| ||||| || || Sbjct 15339 CGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACTTTGCATGCCTGCTCTTCTCTCT 15398 Query 52559 ---CAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGA 52615 ||| || ||| || | || |||| | | || | | | | ||| || Sbjct 15399 TCTCAACACCCGC----CCCAGCAA--GGATGCCGTCAAGGCCATCA------TCACCGA 15446 Query 52616 GGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCAT 52675 ||| || | || || ||||||| | || | || || || || ||||| ||||| Sbjct 15447 GGCTGTTGAGATTGAGCAGGAGTTCCTCACCGAAGCTCTCCCCTGCGCTCTGCTCGGCAT 15506 Query 52676 GAACGCGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGC 52734 ||| | || | ||||||| ||||||||||||| || || || || ||| || || | Sbjct 15507 GAATTC-CACCCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGCCTGCTGTTGGCCC 15565 Query 52735 TCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGC 52794 | || | | ||| || |||||| ||| || || || || ||| | ||||| |||| Sbjct 15566 TTGGCAACACCAAGGTCTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGC 15625 Query 52795 TTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | | ||||||||||||||| ||||||||||| |||||||| || Sbjct 15626 TCGCGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGATTA 15668 >seq113 Length=382967 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| | ||| || ||||| || || || || | | Sbjct 361546 GACTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCCAGCTGCTTTCCAGCA 361605 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||||||||| ||||| || || || ||| || ||| | Sbjct 361606 AAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTGGATCTTCGATTTGACG 361665 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||| |||| ||||| || || | ||| | || || ||||| || || || Sbjct 361666 TTGTCAATGGTATCGGATGACTCTACTTCTAGCGTGATGGTCTTTCCAGTGAGCGTCTTG 361725 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 361726 ACGAAGATCTGCAT 361739 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||| || | ||||| | |||||||| || ||||||||||| | Sbjct 361741 CCTCCGCGCAGGCGCAGCACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 361800 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || |||| | |||| | ||||| ||||||||||| Sbjct 361801 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGAGGA 361860 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | ||||||| ||||| || Sbjct 361861 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATTGTGTCGGATGACTCTACT 361920 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | || || || || || || || || || |||||||| Sbjct 361921 TCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 361967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259478255120