Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq6 145 7e-30 seq113 122 8e-23 seq465 91.5 1e-13 >seq6 Length=114070 Score = 145 bits (160), Expect = 7e-30 Identities = 346/520 (67%), Gaps = 25/520 (5%) Strand=Plus/Plus Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACT 47129 || ||| | |||| |||||||| ||||| | |||| || | || | ||| |||| Sbjct 15163 CCATGCATCCGCAAGAAGGCCGACTGGGCTCTCAAGTGGATCTCAGACAAGAACTCCACT 15222 Query 47130 CTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTT 47189 | ||| | ||| | |||| || || ||| ||||| |||||||| ||| || Sbjct 15223 TTTGCCAACCGTCTCGTCGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGCTCTTTC 15282 Query 47190 GCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAG 47249 ||| | || || | | || | || | ||||| || || || || ||||||| Sbjct 15283 GCGTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATGCCAGGTCTTACCTTCTCCAACGAG 15342 Query 47250 CTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTG----------TCTCTACTA 47299 || ||||| | ||||| ||| |||||||| ||||||| || ||||| || Sbjct 15343 CTCATCTCCCGTGACGAGGGCATGCACACCGACTTTGCATGCCTGCTCTTCTCTCTTCT- 15401 Query 47300 CAACACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGC 47359 |||||| | | | ||| ||| | |||||| | ||| | |||| || Sbjct 15402 CAACACCCGCCCC-AGCAA-----GGATG------CCGTCAAGGCCATCATCACCGAGGC 15449 Query 47360 CGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAA 47419 || | |||||| |||||| || |||| ||||| ||| || | | || ||||| Sbjct 15450 TGTTGAGATTGAGCAGGAGTTCCTCACCGAAGCTCTCCCCTGCGCTCTGCTCGGCATGAA 15509 Query 47420 CGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAA 47479 | | ||| | |||||||||| || ||||| ||||||||||| ||| | Sbjct 15510 TTCCACCCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGCCTGCT-GTTGGCCCTTG 15568 Query 47480 GTATC-CCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCG 47538 | | | ||||| | ||| || || || || ||||| || ||| | ||||| ||||||| Sbjct 15569 GCAACACCAAGGTCTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCG 15628 Query 47539 AGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 ||||||||||||||| |||||||||||||||||||| || Sbjct 15629 CGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGATTA 15668 >seq113 Length=382967 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| ||||| | |||| ||| | ||||| || ||||| || || || ||||| || Sbjct 361740 TCCTCCGCGCAGGCGCAGCACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCCGA 361799 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || |||||| || || ||||| || || || ||||||| |||||||| || ||||| Sbjct 361800 CAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGAGG 361859 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||||||||||||| ||| || ||||| |||| |||| ||||| | ||| | Sbjct 361860 AATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTG-TCGATTGTGTCGGATGACTCTA 361918 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | || |||||||| || || || || || |||||||| Sbjct 361919 CTTCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 361967 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | |||| || | ||| ||||| || || || ||||| ||| Sbjct 361969 CCACCGCGGAGACGGAGGACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAA 362028 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || |||||||| || ||| ||||||| |||||||| || || || Sbjct 362029 AGGGTGCGGCCGTCCTCAAGCTGTTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGA 362088 Query 127007 ATGCCCTCCTTGTC 127020 |||||||||||||| Sbjct 362089 ATGCCCTCCTTGTC 362102 >seq465 Length=132516 Score = 91.5 bits (100), Expect = 1e-13 Identities = 194/282 (69%), Gaps = 6/282 (2%) Strand=Plus/Plus Query 147273 GTAGATGCCGTCGATGCTGTCTTCCTTGATG-CATTGCAGGAAACACGAACACATTTGGG 147331 |||||| |||||||||||||| ||||| ||| | || ||||| || || |||| || | Sbjct 113676 GTAGATACCGTCGATGCTGTCCTCCTTCATGTCGATG-AGGAAGCAGGATGACATCTGAG 113734 Query 147332 GACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGCCCAGACT-C 147390 | ||| ||||| |||||||| || ||| || ||||| || | | | Sbjct 113735 GGTTGGGCGTTCCCGCGTTGAACAGCGTAGGCGAGGCATGTGTGAA-GTACTTTTGCGAC 113793 Query 147391 ATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACG 147450 || | | || || |||||||| || || ||| ||||| || ||| | | |||||| Sbjct 113794 ATGTAGTCGTAGGTCTCAATGGCCTTCTCAATGTCTTCGCCATGGATGCCAACGGCGACA 113853 Query 147451 CGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTTTTAATAGATATCCA 147510 ||||||||||||||||| || || || |||| | | | |||| | || ||| | Sbjct 113854 CGCATGAGCATGTGCTGTGGGCGCTCTGCAACCTTGCCGTTGATGCGGAGGAGGTAT-GA 113912 Query 147511 TTGGTC-AGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTC 147551 | || || || ||||| |||||| ||| ||||| | |||| Sbjct 113913 GCGCTCTAGCGTCTTGAAGCCAAAGAACTGGTAGTTGAAGTC 113954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498000489040