Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq6 145 7e-30
seq113 122 8e-23
seq465 91.5 1e-13
>seq6
Length=114070
Score = 145 bits (160), Expect = 7e-30
Identities = 346/520 (67%), Gaps = 25/520 (5%)
Strand=Plus/Plus
Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACT 47129
|| ||| | |||| |||||||| ||||| | |||| || | || | ||| ||||
Sbjct 15163 CCATGCATCCGCAAGAAGGCCGACTGGGCTCTCAAGTGGATCTCAGACAAGAACTCCACT 15222
Query 47130 CTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTT 47189
| ||| | ||| | |||| || || ||| ||||| |||||||| ||| ||
Sbjct 15223 TTTGCCAACCGTCTCGTCGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGCTCTTTC 15282
Query 47190 GCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAG 47249
||| | || || | | || | || | ||||| || || || || |||||||
Sbjct 15283 GCGTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATGCCAGGTCTTACCTTCTCCAACGAG 15342
Query 47250 CTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTG----------TCTCTACTA 47299
|| ||||| | ||||| ||| |||||||| ||||||| || ||||| ||
Sbjct 15343 CTCATCTCCCGTGACGAGGGCATGCACACCGACTTTGCATGCCTGCTCTTCTCTCTTCT- 15401
Query 47300 CAACACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGC 47359
|||||| | | | ||| ||| | |||||| | ||| | |||| ||
Sbjct 15402 CAACACCCGCCCC-AGCAA-----GGATG------CCGTCAAGGCCATCATCACCGAGGC 15449
Query 47360 CGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAA 47419
|| | |||||| |||||| || |||| ||||| ||| || | | || |||||
Sbjct 15450 TGTTGAGATTGAGCAGGAGTTCCTCACCGAAGCTCTCCCCTGCGCTCTGCTCGGCATGAA 15509
Query 47420 CGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAA 47479
| | ||| | |||||||||| || ||||| ||||||||||| ||| |
Sbjct 15510 TTCCACCCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGCCTGCT-GTTGGCCCTTG 15568
Query 47480 GTATC-CCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCG 47538
| | | ||||| | ||| || || || || ||||| || ||| | ||||| |||||||
Sbjct 15569 GCAACACCAAGGTCTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCG 15628
Query 47539 AGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
||||||||||||||| |||||||||||||||||||| ||
Sbjct 15629 CGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGATTA 15668
>seq113
Length=382967
Score = 122 bits (134), Expect = 8e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
||| ||||| | |||| ||| | ||||| || ||||| || || || ||||| ||
Sbjct 361740 TCCTCCGCGCAGGCGCAGCACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCCGA 361799
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
|| |||||| || || ||||| || || || ||||||| |||||||| || |||||
Sbjct 361800 CAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGAGG 361859
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064
||||||||||||||| ||| || ||||| |||| |||| ||||| | ||| |
Sbjct 361860 AATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTG-TCGATTGTGTCGGATGACTCTA 361918
Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| | || | || |||||||| || || || || || ||||||||
Sbjct 361919 CTTCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 361967
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | |||| || | ||| ||||| || || || ||||| |||
Sbjct 361969 CCACCGCGGAGACGGAGGACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAA 362028
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || |||||||| || ||| ||||||| |||||||| || || ||
Sbjct 362029 AGGGTGCGGCCGTCCTCAAGCTGTTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGA 362088
Query 127007 ATGCCCTCCTTGTC 127020
||||||||||||||
Sbjct 362089 ATGCCCTCCTTGTC 362102
>seq465
Length=132516
Score = 91.5 bits (100), Expect = 1e-13
Identities = 194/282 (69%), Gaps = 6/282 (2%)
Strand=Plus/Plus
Query 147273 GTAGATGCCGTCGATGCTGTCTTCCTTGATG-CATTGCAGGAAACACGAACACATTTGGG 147331
|||||| |||||||||||||| ||||| ||| | || ||||| || || |||| || |
Sbjct 113676 GTAGATACCGTCGATGCTGTCCTCCTTCATGTCGATG-AGGAAGCAGGATGACATCTGAG 113734
Query 147332 GACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGCCCAGACT-C 147390
| ||| ||||| |||||||| || ||| || ||||| || | | |
Sbjct 113735 GGTTGGGCGTTCCCGCGTTGAACAGCGTAGGCGAGGCATGTGTGAA-GTACTTTTGCGAC 113793
Query 147391 ATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACG 147450
|| | | || || |||||||| || || ||| ||||| || ||| | | ||||||
Sbjct 113794 ATGTAGTCGTAGGTCTCAATGGCCTTCTCAATGTCTTCGCCATGGATGCCAACGGCGACA 113853
Query 147451 CGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTTTTAATAGATATCCA 147510
||||||||||||||||| || || || |||| | | | |||| | || ||| |
Sbjct 113854 CGCATGAGCATGTGCTGTGGGCGCTCTGCAACCTTGCCGTTGATGCGGAGGAGGTAT-GA 113912
Query 147511 TTGGTC-AGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTC 147551
| || || || ||||| |||||| ||| ||||| | ||||
Sbjct 113913 GCGCTCTAGCGTCTTGAAGCCAAAGAACTGGTAGTTGAAGTC 113954
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475498000489040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |