Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq465 149 6e-31 seq113 96.9 3e-15 >seq465 Length=132516 Score = 149 bits (164), Expect = 6e-31 Identities = 559/869 (64%), Gaps = 21/869 (2%) Strand=Plus/Minus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 ||||| || || || || || ||||||||||| ||||| | ||| | || || Sbjct 113888 AAGGTTGCAGAGCGCCCACAGCACATGCTCATGCGTGTCGCCGTTGGCATCCATGGCGAA 113829 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 ||||| || || || | || || ||||| | ||||| ||||| | ||||| || || Sbjct 113828 GACATTGAGAAGGCCATTGAGACCTACGACTACATGTCGCAAAAGTACTTCACACATGCC 113769 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 || || ||||| ||| || ||| |||||| |||| || || || | || Sbjct 113768 TCGCCTACGCTGTTCAACGCGGGAACGCCCAACCCTCAGATGTCATCCTGCTTCCTCATC 113709 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 | || || ||||||||| ||||||||| || || || || |||||||| Sbjct 113708 GACATGAAGGAGGACAGCATCGACGGTATCTACGACACACTGAAGACGTGTGCGTTGATC 113649 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGC 123197 ||||| | |||||||| || | || |||||| | | | | | ||| | | Sbjct 113648 TCCAAGACCGCTGGCGGCATTGGACTCAATGTGCACCGCATCCGTGCCACCGGCTCCTAC 113589 Query 123198 ATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCC--ATGCTGCGAGTTTACAATA 123255 || | ||||| |||||| || || ||| |||| ||||| || || ||||| | Sbjct 113588 ATTGGTGGCACCAACGGAACATCCAATGGTCTC--ATCCCGATGCTCCGTGTCTACAACA 113531 Query 123256 ACGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGGCGATCTATC 123312 || ||| || ||||||| ||||| || ||| ||| || || | || ||||| | Sbjct 113530 ACACCGCTCGCTACGTCGATCAGGGTGGCAACAAGCGCCCTGGTGCTTTCGCCATCTACC 113471 Query 123313 TAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGC---AACATGGGGG 123369 | || || ||||||| ||||| | || || | | | |||| ||| || Sbjct 113470 TCGAGCCATGGCACGCGGATGTATTCGGCTTCCTTGACCT---ACGCAAGAACCACGGTA 113414 Query 123370 CGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGC 123429 |||||| ||| || || | || ||||| | ||| | |||||| | || ||| Sbjct 113413 AGGAAGAGGTACGAGCTCGTGACCTCTTCTACGCCCTCTGGATTCCCGATCTCTTCATGA 113354 Query 123430 GACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGG-CTTG 123488 || || |||| |||||| |||| | |||||||| ||| | ||| || || |||| Sbjct 113353 AGCGAGTGCAAGAGAACGGCGAGTGGACACTCATGTGCCCCAACGAGTGCCCTGGTCTTG 113294 Query 123489 AGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAA 123548 |||||| |||||| || |||| || ||| | ||| | | ||||||||||| || Sbjct 113293 -CCGACGTCTACGGCGATGAGTTCGAGGAGCTCTACACCCGTTACGAGCGCGA---GAAC 113238 Query 123549 CAGGTTAGTCAG---GTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTC 123605 ||| | | || |||| || | | | | | ||| |||| | || Sbjct 113237 AAGGGTCGCGAGACTGTTCGTGCCCAGAAGCTCTGGTACGCCATTCTCGAGGCGCAGACT 113178 Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || || || | |||| |||||| ||||| ||||| ||||||||||| |||| |||| Sbjct 113177 GAGACTGGCAACCCGTTCATGCTGTACAAGGACGCTTGCAACAGGAAGTCCAACCAGAAG 113118 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCC 123725 ||| | || || || | || || ||| | || ||| |||| | || | | | Sbjct 113117 AACCTCGGTACCATTCGCAGCTCCAACCTCTGCACTGAGATTGTCGAGTTCACTGCTCCT 113058 Query 123726 GATCAAGTGGCCGTGTGTAATTTGGCTTC 123754 ||| | || |||||||| || ||||||| Sbjct 113057 GATGAGGTCGCCGTGTGCAACCTGGCTTC 113029 >seq113 Length=382967 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||||||||| || | || ||| ||||| || || || ||||| ||||| || || || Sbjct 361738 ATTCCTCCGCGCAGGCGCAGCACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCC 361797 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | || || | || || || || | ||||| || |||||||||| Sbjct 361798 --GACAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCG 361855 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | |||||||| || || || || || || |||| || | || | |||||||| ||| Sbjct 361856 GAGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGA-CGTTGTCGATTGTGTCGGATGAC 361914 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || || | || |||||||| || || || || || || ||||| Sbjct 361915 TCTACTTCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 361967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000538831160