Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq465 149 6e-31
seq113 96.9 3e-15
>seq465
Length=132516
Score = 149 bits (164), Expect = 6e-31
Identities = 559/869 (64%), Gaps = 21/869 (2%)
Strand=Plus/Minus
Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957
||||| || || || || || ||||||||||| ||||| | ||| | || ||
Sbjct 113888 AAGGTTGCAGAGCGCCCACAGCACATGCTCATGCGTGTCGCCGTTGGCATCCATGGCGAA 113829
Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017
||||| || || || | || || ||||| | ||||| ||||| | ||||| || ||
Sbjct 113828 GACATTGAGAAGGCCATTGAGACCTACGACTACATGTCGCAAAAGTACTTCACACATGCC 113769
Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077
|| || ||||| ||| || ||| |||||| |||| || || || | ||
Sbjct 113768 TCGCCTACGCTGTTCAACGCGGGAACGCCCAACCCTCAGATGTCATCCTGCTTCCTCATC 113709
Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137
| || || ||||||||| ||||||||| || || || || ||||||||
Sbjct 113708 GACATGAAGGAGGACAGCATCGACGGTATCTACGACACACTGAAGACGTGTGCGTTGATC 113649
Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGC 123197
||||| | |||||||| || | || |||||| | | | | | ||| | |
Sbjct 113648 TCCAAGACCGCTGGCGGCATTGGACTCAATGTGCACCGCATCCGTGCCACCGGCTCCTAC 113589
Query 123198 ATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCC--ATGCTGCGAGTTTACAATA 123255
|| | ||||| |||||| || || ||| |||| ||||| || || ||||| |
Sbjct 113588 ATTGGTGGCACCAACGGAACATCCAATGGTCTC--ATCCCGATGCTCCGTGTCTACAACA 113531
Query 123256 ACGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGGCGATCTATC 123312
|| ||| || ||||||| ||||| || ||| ||| || || | || ||||| |
Sbjct 113530 ACACCGCTCGCTACGTCGATCAGGGTGGCAACAAGCGCCCTGGTGCTTTCGCCATCTACC 113471
Query 123313 TAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGC---AACATGGGGG 123369
| || || ||||||| ||||| | || || | | | |||| ||| ||
Sbjct 113470 TCGAGCCATGGCACGCGGATGTATTCGGCTTCCTTGACCT---ACGCAAGAACCACGGTA 113414
Query 123370 CGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGC 123429
|||||| ||| || || | || ||||| | ||| | |||||| | || |||
Sbjct 113413 AGGAAGAGGTACGAGCTCGTGACCTCTTCTACGCCCTCTGGATTCCCGATCTCTTCATGA 113354
Query 123430 GACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGG-CTTG 123488
|| || |||| |||||| |||| | |||||||| ||| | ||| || || ||||
Sbjct 113353 AGCGAGTGCAAGAGAACGGCGAGTGGACACTCATGTGCCCCAACGAGTGCCCTGGTCTTG 113294
Query 123489 AGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAA 123548
|||||| |||||| || |||| || ||| | ||| | | ||||||||||| ||
Sbjct 113293 -CCGACGTCTACGGCGATGAGTTCGAGGAGCTCTACACCCGTTACGAGCGCGA---GAAC 113238
Query 123549 CAGGTTAGTCAG---GTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTC 123605
||| | | || |||| || | | | | | ||| |||| | ||
Sbjct 113237 AAGGGTCGCGAGACTGTTCGTGCCCAGAAGCTCTGGTACGCCATTCTCGAGGCGCAGACT 113178
Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665
|| || || | |||| |||||| ||||| ||||| ||||||||||| |||| ||||
Sbjct 113177 GAGACTGGCAACCCGTTCATGCTGTACAAGGACGCTTGCAACAGGAAGTCCAACCAGAAG 113118
Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCC 123725
||| | || || || | || || ||| | || ||| |||| | || | | |
Sbjct 113117 AACCTCGGTACCATTCGCAGCTCCAACCTCTGCACTGAGATTGTCGAGTTCACTGCTCCT 113058
Query 123726 GATCAAGTGGCCGTGTGTAATTTGGCTTC 123754
||| | || |||||||| || |||||||
Sbjct 113057 GATGAGGTCGCCGTGTGCAACCTGGCTTC 113029
>seq113
Length=382967
Score = 96.9 bits (106), Expect = 3e-15
Identities = 164/233 (70%), Gaps = 6/233 (3%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||||||||| || | || ||| ||||| || || || ||||| ||||| || || ||
Sbjct 361738 ATTCCTCCGCGCAGGCGCAGCACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCC 361797
Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228
||| | | | || || | || || || || | ||||| || ||||||||||
Sbjct 361798 --GACAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCG 361855
Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287
| |||||||| || || || || || || |||| || | || | |||||||| |||
Sbjct 361856 GAGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGA-CGTTGTCGATTGTGTCGGATGAC 361914
Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| ||||| || || | || |||||||| || || || || || || |||||
Sbjct 361915 TCTACTTCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 361967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452000538831160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |