Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq465 224 1e-53 seq6 131 2e-25 >seq465 Length=132516 Score = 224 bits (248), Expect = 1e-53 Identities = 1110/1741 (64%), Gaps = 51/1741 (3%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || ||||||||||| || ||||| | || |||||||| | | |||||| || | Sbjct 112150 CGAAGGTAGTACATGCCGGTCTTCAAACCGAGCTTCCAGCCGGCGAAATGCATGGAAGTG 112209 Query 115618 AACTTGGAGAGTGTTGGACTT-TCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 115676 | ||| | || ||| || | |||| || ||||| || |||||||||||||| Sbjct 112210 ATCTTACCCA-TGGTGGGCTCCTTCATGTGGATGTTCAATGACTGAGATTGATCGATGAA 112268 Query 115677 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCT 115736 | || || || || ||||| | || | | | ||||||||| || || | Sbjct 112269 GGCACCGCGGTCAGCAGCCATCTGGATGATGGTACGCTGCGAGATTTCCCATACGGTCTT 112328 Query 115737 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTT 115796 ||| ||| |||| | || |||||||| | ||| | ||||| || ||||| | | Sbjct 112329 GTAAAGGGTCTTGGTCTCTTCTGGGATGTTGGGGATCCTCTGGATGGAACCACCATC--T 112386 Query 115797 GACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCAC 115853 | | |||| | | |||||| | || ||||||||||| || | ||| |||| Sbjct 112387 G-CAATGATACGGTTCTTCATGTTCTCAGACCAGAGACCCATGTCGACGAGGTCCTT--- 112442 Query 115854 GAGGTGCTTA---TTGACAACAACAAACTCACCCGCGAGGGTGCGTC-TCAGATAGATGT 115909 |||| || | ||||| || |||||||| || || || | | || ||||||| Sbjct 112443 GAGGAGCCAAGGGTTGACGACCTGGAACTCACCAGCCAGCACACGACGTGAG-TAGATGT 112501 Query 115910 TGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGG 115969 | | ||||||||||| |||||||| ||||| || | || || | || ||||| || | Sbjct 112502 TCGAGGTGTATGGCTCGAAGCACTCGTTGTTTCCAAGAATCTGCGAAGTCGAGGCAGTAG 112561 Query 115970 GCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGG 116029 ||||||| || | || || |||||| | ||| | || ||||| | | Sbjct 112562 GCATGGGCGCAACCAGGAGAGAGTTGCGCACACCATGCTGAGCGATCTTGTCCTTCAACG 112621 Query 116030 CGTCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACC 116087 |||||| | || | || | || | | |||| | ||| |||| || ||| Sbjct 112622 AAGCCCAGTCCCAAAGGTCAG-AAGGAGTCACGC-CCCAGAGATCGTACTGAAGCTGACC 112679 Query 116088 TTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC---GCCAATTC 116144 | |||| | ||||| ||||| |||| ||||||| | ||| |||| || | || Sbjct 112680 CTTGGACACAGGCGAACCCTCGTATGTAGCATATGGAC---CAAGCTCCTTGGCGATATC 112736 Query 116145 GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT 116204 | || || | ||| || ||||| || |||||||| || || | | || | ||| Sbjct 112737 GCAGGACGACGTGAGAGCCGCGTGGTAAATTGTCTCGAAGATCTGGGTGTTGAGCTTCTT 112796 Query 116205 GGCCTC-GTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGA 116263 ||| || ||| || ||||| | ||||| | || |||| || ||||| || | Sbjct 112797 GGCTTCAGTC-GACTCAAAAGGCAGACGAAGGGCGAGGAAAGCATCAGCAAGACCCTGAA 112855 Query 116264 CACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAA 116323 |||| || || || || | ||| | | ||| || || |||||| || || Sbjct 112856 CACCAAGACCGATGGGCCTATGGCGGAAATTGCTGCGGCGTGCCTCCTCCACAGGGTAGT 112915 Query 116324 AATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCT 116383 || ||||| | | | || || || ||||| ||| | || | || || |||| Sbjct 112916 GGTTGACCTCGATGATCTTGTTGAGGTTACGTGTGACGACCATGGTCACCTCGTGGAGCT 112975 Query 116384 TTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCA 116443 | | | | || || || | || | | |||| | |||||||||| || |||| Sbjct 112976 TGTGGAAGTCGAACTCGCCACGCTTGTAGTCGACAAAGGATGGAAGGGCGAGGGAAGCCA 113035 Query 116444 GATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTG 116503 | || ||||| | | |||||| | ||||| |||| | ||| || || || | || | Sbjct 113036 GGTTGCACACGGCGACCTCATCAGGAGCAGTGAACTCGACAATCTCAGTGCAGAGGTTGG 113095 Query 116504 AACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGA 116563 | || |||||| || | |||||| || || ||||| |||| || || |||||||| | Sbjct 113096 AGCTGCGAATGGTACCGAGGTTCTTCTGGTTGGACTTCCTGTTGCAAGCGTCCTTGTACA 113155 Query 116564 GCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCG 116622 |||| | || | || ||||| || || | || |||||| || | ||| | | || | | Sbjct 113156 GCATGAACGGGTTGCCAGTCTCAGTCTGCGCCTCGAGAATGGCGTACCAGAGCTTCTG-G 113214 Query 116623 GCTGGCACAGTGGCGTTGGCTCGCCCC---TCCTC---CTCGTACTTTGTGTAGAGGGCC 116676 || | ||||| || || ||| | ||| |||||| |||||||| || Sbjct 113215 GCACGAACAGTCTCG------CGACCCTTGTTCTCGCGCTCGTAACGGGTGTAGAGCTCC 113268 Query 116677 TCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGAC 116736 || ||||| || || | || | || || || || | || || | ||| | | Sbjct 113269 TCGAACTCATCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATGAGTGTC 113328 Query 116737 CATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAG 116796 || | || ||| | || |||||||||||||| || || |||||||| || ||||| Sbjct 113329 CACTCGCCGTTCTCTTGCACTCGCTTCATGAAGAGATCGGGAATCCAGAGGGCGTAGAAG 113388 Query 116797 AGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATG 116856 || || ||| || | ||||| | || || || || | || | ||| | | Sbjct 113389 AGGTCACGAGCTCGTACCTCTTCCTTACCGTGGTTCTTGCGTAGGTCAAGGAAGCCGAAT 113448 Query 116857 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCC 116913 | |||||||||||| || || ||||| | |||| | || ||| ||| || Sbjct 113449 ACATCCGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGGCGCTTGTTGCCACCC 113508 Query 116914 TGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGAT 116973 || | || || | || || ||| | || || ||||| || |||| ||||| ||| Sbjct 113509 TGATCGACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATCGGGATGAGACCATTGGAT 113568 Query 116974 TGGCCATTTGTCCCCCGAA--TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATAC 117031 || || || || | || || ||| | | |||| | || ||| | | | | Sbjct 113569 GTTCCGTTGGTGCCACCAATGTAGGAGCC--GGTGGCACGGATGCGGTGCACATTGAGTC 113626 Query 117032 CAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCAT 117091 |||| || || || ||| ||||| || ||| | | || || ||||||| || | Sbjct 113627 CAATGCCGCCAGCGGTCTTGGAGATCAACGCACACGTCTTCAGTGTGTCGTAGATACCGT 113686 Query 117092 CGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTAC 117151 |||| ||| |||| | |||||||||||||| ||||| || || | || || | Sbjct 113687 CGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGAGGGTTGGGCGTTC 113746 Query 117152 CAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTATCGTAG 117210 | |||||||| || || || | || || |||| ||| ||| ||||| | |||||| Sbjct 113747 CCGCGTTGAACAGCGTAGGCGAGGCATGTGTGAA-GTACTTTTGCGACATGTAGTCGTAG 113805 Query 117211 GTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATG 117270 ||||| | | | ||||||||| || || || || | | ||| ||||| | |||| Sbjct 113806 GTCTCAATGGCCTTCTCAATGTCTTCGCCATGGATGCCAACGGCGACACGCATGAGCATG 113865 Query 117271 T 117271 | Sbjct 113866 T 113866 >seq6 Length=114070 Score = 131 bits (144), Expect = 2e-25 Identities = 350/525 (67%), Gaps = 30/525 (6%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || ||||| ||||||||||||||||| ||||| || |||| ||| |||||||| Sbjct 15669 GTAATCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCGCGAGCGAGATGTTCTCCAT 15610 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAAT-----TGTTGGCACC--CCAATCTGTTTGA 127343 || || || ||||| | | ||| | | ||||| || |||| | Sbjct 15609 GAAGTCGAAGGGGTTGGTGGCGTTGTAGACCTTGGTGTTGCCAAGGGCCAAC-------A 15557 Query 127344 GGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGA 127403 | || || || | |||| |||| ||||||| |||| || ||||| |||| | Sbjct 15556 GCAGGCGGTCAGCGACGAACTCGATGTACTGGCACATGAGGGTGGAATTCATGCCGAGCA 15497 Query 127404 GGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGA 127463 | || ||||| || || || |||| ||| |||||| || ||||| || | || Sbjct 15496 GAGCGCAGGGGAGAGCTTCGGTGAGGAACTCCTGCTCAATCTCAACAGCCTCGGTGATGA 15437 Query 127464 TGGCGTGAATAGTGTCCACCCCAGGTC---TATTGCGTAAAGTCTTGAAGAGTTCCA--C 127518 |||| | | | ||| | || | | ||| | | || |||||| || | Sbjct 15436 TGGCCTTGACGGCATCCTTGCTGGGGCGGGTGTTGAGAAGAGA---GAAGAG---CAGGC 15383 Query 127519 A-GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGAC 127577 | ||||| || ||| | |||||||||||||||||||| || || |||||| |||| Sbjct 15382 ATGCAAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGAC 15323 Query 127578 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAG 127636 ||||||| ||||| |||||||| | |||||| || | | | ||| ||||| ||||||| Sbjct 15322 CTGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGACGCGAAA-GAGCCGCTGAAGAAG 15264 Query 127637 ATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCA 127696 || ||||| || || || || | ||||| | |||||| | | | | |||| | | Sbjct 15263 ATACCCTCAACGGCAGCAAAGGCGACGAGACGGTTGGCAAAAGTG-GAGTTCTTGTCTGA 15205 Query 127697 -AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGAC 127740 | |||||| | ||||| | ||||| || ||| ||||| || Sbjct 15204 GATCCACTTGAGAGCCCAGTCGGCCTTCTTGCGGATGCATGGAAC 15160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613503587976360