Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq113 158 1e-33
seq53 111 2e-19
seq267 98.7 1e-15
>seq113
Length=382967
Score = 158 bits (174), Expect = 1e-33
Identities = 166/216 (77%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| ||| ||||| | || |||||| ||||| |||||||| || || ||||| ||
Sbjct 361753 CGCAGCACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCG 361812
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| || |||||||||||||| || ||||||||||||||||| | || | || |||||||
Sbjct 361813 TCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGAGGAATGCCCTCCTTG 361872
Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
||| |||||| |||||| ||| | | | |||||| || || || || | ||||||
Sbjct 361873 TCCTGGATCTTGCTCTTGA-CGTTGTCGATTGTGTCGGATGACTCTACTTCAAGCGTGAT 361931
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| ||||| || ||||| || || ||||| |||||
Sbjct 361932 GGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 361967
Score = 109 bits (120), Expect = 6e-19
Identities = 153/212 (72%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||||| |||| || |||||| || || ||||||||||| |||||||| | || ||
Sbjct 361530 CACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGGCCATCCTC 361589
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
|||||||| || || || || | ||||||||||| | || | | |||||| |||
Sbjct 361590 CAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTG 361649
Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562
||||||| |||| ||| | | | || ||| || || || || | ||||||||| |
Sbjct 361650 GATCTTCGATTTGA-CGTTGTCAATGGTATCGGATGACTCTACTTCTAGCGTGATGGTCT 361708
Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
| || || ||||| || || ||||| ||||||
Sbjct 361709 TTCCAGTGAGCGTCTTGACGAAGATCTGCATT 361740
Score = 107 bits (118), Expect = 2e-18
Identities = 83/99 (84%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| |||| || ||||| |||||||||||
Sbjct 362004 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCAAGCTGTTTGCCGGCGAA 362063
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
||||||||||||||||| | || | || |||||||||
Sbjct 362064 GATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 362102
>seq53
Length=59568
Score = 111 bits (122), Expect = 2e-19
Identities = 94/116 (81%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| | || ||||| ||||||||||||||
Sbjct 12442 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGTTGCTTGCCGGCGAA 12501
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517
|||| |||||||||||| | || | || |||||||||| |||||| |||||
Sbjct 12502 GATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA 12557
>seq267
Length=290730
Score = 98.7 bits (108), Expect = 1e-15
Identities = 92/117 (79%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||| ||||| | || |||||| ||||| |||||||| || |||||||| | || ||
Sbjct 207187 CACTAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTC 207246
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
|||||||||||||||||| || | ||||||||||| | || | || |||||||||
Sbjct 207247 GAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 207303
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565235072158920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |