Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq113 158 1e-33 seq53 111 2e-19 seq267 98.7 1e-15 >seq113 Length=382967 Score = 158 bits (174), Expect = 1e-33 Identities = 166/216 (77%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| ||||| | || |||||| ||||| |||||||| || || ||||| || Sbjct 361753 CGCAGCACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCG 361812 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||||||||| || ||||||||||||||||| | || | || ||||||| Sbjct 361813 TCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGAGGAATGCCCTCCTTG 361872 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| |||||| ||| | | | |||||| || || || || | |||||| Sbjct 361873 TCCTGGATCTTGCTCTTGA-CGTTGTCGATTGTGTCGGATGACTCTACTTCAAGCGTGAT 361931 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || ||||| || || ||||| ||||| Sbjct 361932 GGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 361967 Score = 109 bits (120), Expect = 6e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| |||| || |||||| || || ||||||||||| |||||||| | || || Sbjct 361530 CACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGGCCATCCTC 361589 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||| || || || || | ||||||||||| | || | | |||||| ||| Sbjct 361590 CAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTG 361649 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 ||||||| |||| ||| | | | || ||| || || || || | ||||||||| | Sbjct 361650 GATCTTCGATTTGA-CGTTGTCAATGGTATCGGATGACTCTACTTCTAGCGTGATGGTCT 361708 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | || || ||||| || || ||||| |||||| Sbjct 361709 TTCCAGTGAGCGTCTTGACGAAGATCTGCATT 361740 Score = 107 bits (118), Expect = 2e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| || ||||| ||||||||||| Sbjct 362004 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCAAGCTGTTTGCCGGCGAA 362063 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 ||||||||||||||||| | || | || ||||||||| Sbjct 362064 GATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 362102 >seq53 Length=59568 Score = 111 bits (122), Expect = 2e-19 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| | || ||||| |||||||||||||| Sbjct 12442 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGTTGCTTGCCGGCGAA 12501 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 |||| |||||||||||| | || | || |||||||||| |||||| ||||| Sbjct 12502 GATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA 12557 >seq267 Length=290730 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| ||||| | || |||||| ||||| |||||||| || |||||||| | || || Sbjct 207187 CACTAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTC 207246 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 |||||||||||||||||| || | ||||||||||| | || | || ||||||||| Sbjct 207247 GAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 207303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565235072158920