Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq6 257 2e-63 seq113 123 2e-23 seq53 107 2e-18 seq267 89.7 5e-13 >seq6 Length=114070 Score = 257 bits (284), Expect = 2e-63 Identities = 603/910 (66%), Gaps = 69/910 (8%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| || || || ||||| || ||||| || || || || || ||| | Sbjct 15687 CATGACACCAGCCTTCTGGTAATCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCGC 15628 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 | || ||| | ||| || || |||||||||| | ||||||| ||||||| | Sbjct 15627 GAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGACCTTGGTGTTGCC 15568 Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATT 132770 ||| | | ||||| | ||| || |||||||||||||| || ||||| | |||| Sbjct 15567 AAGGGCCAACAGCAGGCGGTCAGCGACGAACTCGATGTACTGGCACATGAGGGTGGAATT 15508 Query 132771 AAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCG 132829 | || |||||| |||| || || ||||||||||| || ||||| || | || | Sbjct 15507 CATGCCGAGCAGAGCGCAGGGG-AGAGCTTCGGTGAGGAACTCCTGCTCAATCTCAACAG 15449 Query 132830 CGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCG----TTGCACCAAATGCTTG 132885 | ||||||| ||| || | ||| || ||| || || ||| | | | | Sbjct 15448 CCTCGGTGATGATGGCCTTGACGGCATCCTTGCTGGGGCGGGTGTTG----AGAAGAGAG 15393 Query 132886 AACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTG 132945 || | || ||| ||||||||| |||| ||||||||| | ||| ||||| |||||| | Sbjct 15392 AAGAGCAGGCATGCAAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAG 15333 Query 132946 AAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC 133005 || || | || ||||| || ||||| || |||||||| || |||| |||||| ||| Sbjct 15332 AAGGTAAGACCTGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGACGCGAAAGAGCCG 15273 Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC-TTC 133064 ||||||| ||||| ||||| || || || || || || | | | || |||| ||| Sbjct 15272 CTGAAGAAGATACCCTCAACGGCAGCAAAGGCGACGAGACGGTTGGCAAAAGTGGAGTTC 15213 Query 133065 TTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTT---------------CTTTGAC 133109 || ||| |||||| || ||||| |||||||| | || |||| Sbjct 15212 TTGTCTGA-GATCCACTTGAGAGCCCAGTCGGCCTTCTTGCGGATGCATGGAACTATGAC 15154 Query 133110 GC-------ACGG--CATC-------------------------GTT-TCGATGGCGTTC 133134 || ||| | || ||| || |||||||| Sbjct 15153 GCGTTAGACACGTTCCTTCAAGCGTGTGGTGGAAGTGACTTACTGTTGTCAATGGCGTTG 15094 Query 133135 AACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACA 133192 || | | | | | || || || ||| | ||| |||||||||||| ||| || Sbjct 15093 AAGAG--GTATGTGCGCTGCCTTGGCTCGCTGATGTATGTGTCGATGAGGAGCGAGTATG 15036 Query 133193 TTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCA 133252 | || ||||| | ||||||||| || || |||||||| ||||| || ||||| | Sbjct 15035 TCTCTGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCATCGTGCCTCTGGTA 14976 Query 133253 CCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGG 133312 || || || | ||| |||||||| || || |||||||||||||| ||| ||||| Sbjct 14975 TTTGAACCTCGCTGGAGAAGCGCTCGACGAGGTTCTCGTTGACGATGCCATCGGAGGCGG 14916 Query 133313 CGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC---TCCC 133369 |||| ||||| || ||||| |||||| ||||||| |||||| | |||| | || Sbjct 14915 CGAAGAAGGCGAGAACGTGGGAGATGAAGAAACGCTCGTCGTCGTTGAGGCGCTTGTTCC 14856 Query 133370 AGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTT 133429 ||||| | ||||||||||| || | ||||||| ||||||| || || || ||||| | Sbjct 14855 AGTCGTGGAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCTTCGGCCT 14796 Query 133430 TTTTGTACAT 133439 | |||||||| Sbjct 14795 TCTTGTACAT 14786 >seq113 Length=382967 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || |||||||| || || |||||||| | || || ||| | | Sbjct 361740 AATGCAGATCTTCGTCAAGACGCTCACTGGAAAGACCATCACGCTAGAAGTAGAGTCATC 361681 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||| | | | | |||| | ||| || |||| || || ||||| || || | |||| Sbjct 361680 CGATACCATTGACAACG-TCAAATCGAAGATCCAGGATAAGGAGGGTATCCCTCCGGACC 361622 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | || || || |||||||| || | ||||| ||| |||||||| Sbjct 361621 AGCAGCGTCTCATCTTTGCTGGAAAGCAGCTGGAGGATGGCCGCACTCTCTCCGACTACA 361562 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||| || ||||| |||| ||||| |||||||| || Sbjct 361561 ACATTCAGAAGGAGTCGACTCTGCACTTGGTGCTCCG 361525 Score = 116 bits (128), Expect = 4e-21 Identities = 158/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || |||||||| ||||| |||||||| | || || ||| | || Sbjct 361967 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACGCTTGAAGTAGAGTCATCC 361908 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | |||| || |||| ||||| ||||| ||||| | |||| Sbjct 361907 GACACAATCGACAACG--TCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACC 361850 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | || ||||| ||||| || |||| ||||| || ||||||| Sbjct 361849 AGCAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTGTCGGACTACA 361790 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| ||||| | || || ||| | |||||||| Sbjct 361789 ACATCCAGAAGGAGTCCACTCTACATCTCGTGCTGCG 361753 Score = 105 bits (116), Expect = 7e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| |||||| | ||||| ||||| | || | ||| ||||||||||| || Sbjct 362102 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTCGCCGGCAAACAGCTTGAG 362043 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| |||||||| ||||||||||||||| ||||| ||||||| || |||| || Sbjct 362042 GACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACGCTCCACCTGGTCCTC 361983 Query 38457 CGT 38459 ||| Sbjct 361982 CGT 361980 >seq53 Length=59568 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| |||||| | ||||| ||||| || || | ||| ||||| Sbjct 12549 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 12490 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 || || || || | |||||||| ||||||||||||||| ||||| |||| ||||| Sbjct 12489 CAACTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACTCTGCAC 12430 Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||| | | |||||| Sbjct 12429 TTGGTCCTCCGTCTCCGTGGCGGC 12406 >seq267 Length=290730 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| |||||| | ||||| ||||| ||||| | ||| ||||| ||||| || Sbjct 207303 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAG 207244 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | ||||| || |||||||||||||| ||||| | || || ||| | ||||| Sbjct 207243 GATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCATCTAGTGCTC 207184 Query 38457 CG 38458 || Sbjct 207183 CG 207182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169855232640