Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq6 257 2e-63
seq113 123 2e-23
seq53 107 2e-18
seq267 89.7 5e-13
>seq6
Length=114070
Score = 257 bits (284), Expect = 2e-63
Identities = 603/910 (66%), Gaps = 69/910 (8%)
Strand=Plus/Minus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
||| || ||| || || || ||||| || ||||| || || || || || ||| |
Sbjct 15687 CATGACACCAGCCTTCTGGTAATCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCGC 15628
Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710
| || ||| | ||| || || |||||||||| | ||||||| ||||||| |
Sbjct 15627 GAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGACCTTGGTGTTGCC 15568
Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATT 132770
||| | | ||||| | ||| || |||||||||||||| || ||||| | ||||
Sbjct 15567 AAGGGCCAACAGCAGGCGGTCAGCGACGAACTCGATGTACTGGCACATGAGGGTGGAATT 15508
Query 132771 AAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCG 132829
| || |||||| |||| || || ||||||||||| || ||||| || | || |
Sbjct 15507 CATGCCGAGCAGAGCGCAGGGG-AGAGCTTCGGTGAGGAACTCCTGCTCAATCTCAACAG 15449
Query 132830 CGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCG----TTGCACCAAATGCTTG 132885
| ||||||| ||| || | ||| || ||| || || ||| | | | |
Sbjct 15448 CCTCGGTGATGATGGCCTTGACGGCATCCTTGCTGGGGCGGGTGTTG----AGAAGAGAG 15393
Query 132886 AACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTG 132945
|| | || ||| ||||||||| |||| ||||||||| | ||| ||||| |||||| |
Sbjct 15392 AAGAGCAGGCATGCAAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAG 15333
Query 132946 AAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC 133005
|| || | || ||||| || ||||| || |||||||| || |||| |||||| |||
Sbjct 15332 AAGGTAAGACCTGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGACGCGAAAGAGCCG 15273
Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC-TTC 133064
||||||| ||||| ||||| || || || || || || | | | || |||| |||
Sbjct 15272 CTGAAGAAGATACCCTCAACGGCAGCAAAGGCGACGAGACGGTTGGCAAAAGTGGAGTTC 15213
Query 133065 TTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTT---------------CTTTGAC 133109
|| ||| |||||| || ||||| |||||||| | || ||||
Sbjct 15212 TTGTCTGA-GATCCACTTGAGAGCCCAGTCGGCCTTCTTGCGGATGCATGGAACTATGAC 15154
Query 133110 GC-------ACGG--CATC-------------------------GTT-TCGATGGCGTTC 133134
|| ||| | || ||| || ||||||||
Sbjct 15153 GCGTTAGACACGTTCCTTCAAGCGTGTGGTGGAAGTGACTTACTGTTGTCAATGGCGTTG 15094
Query 133135 AACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACA 133192
|| | | | | | || || || ||| | ||| |||||||||||| ||| ||
Sbjct 15093 AAGAG--GTATGTGCGCTGCCTTGGCTCGCTGATGTATGTGTCGATGAGGAGCGAGTATG 15036
Query 133193 TTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCA 133252
| || ||||| | ||||||||| || || |||||||| ||||| || ||||| |
Sbjct 15035 TCTCTGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCATCGTGCCTCTGGTA 14976
Query 133253 CCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGG 133312
|| || || | ||| |||||||| || || |||||||||||||| ||| |||||
Sbjct 14975 TTTGAACCTCGCTGGAGAAGCGCTCGACGAGGTTCTCGTTGACGATGCCATCGGAGGCGG 14916
Query 133313 CGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC---TCCC 133369
|||| ||||| || ||||| |||||| ||||||| |||||| | |||| | ||
Sbjct 14915 CGAAGAAGGCGAGAACGTGGGAGATGAAGAAACGCTCGTCGTCGTTGAGGCGCTTGTTCC 14856
Query 133370 AGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTT 133429
||||| | ||||||||||| || | ||||||| ||||||| || || || ||||| |
Sbjct 14855 AGTCGTGGAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCTTCGGCCT 14796
Query 133430 TTTTGTACAT 133439
| ||||||||
Sbjct 14795 TCTTGTACAT 14786
>seq113
Length=382967
Score = 123 bits (136), Expect = 2e-23
Identities = 159/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || ||||| || |||||||| || || |||||||| | || || ||| | |
Sbjct 361740 AATGCAGATCTTCGTCAAGACGCTCACTGGAAAGACCATCACGCTAGAAGTAGAGTCATC 361681
Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
||| | | | | |||| | ||| || |||| || || ||||| || || | ||||
Sbjct 361680 CGATACCATTGACAACG-TCAAATCGAAGATCCAGGATAAGGAGGGTATCCCTCCGGACC 361622
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| ||||| | || || || |||||||| || | ||||| ||| ||||||||
Sbjct 361621 AGCAGCGTCTCATCTTTGCTGGAAAGCAGCTGGAGGATGGCCGCACTCTCTCCGACTACA 361562
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||| || ||||| |||| ||||| |||||||| ||
Sbjct 361561 ACATTCAGAAGGAGTCGACTCTGCACTTGGTGCTCCG 361525
Score = 116 bits (128), Expect = 4e-21
Identities = 158/217 (73%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || |||||||| ||||| |||||||| | || || ||| | ||
Sbjct 361967 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACGCTTGAAGTAGAGTCATCC 361908
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| | | |||| | |||| || |||| ||||| ||||| ||||| | ||||
Sbjct 361907 GACACAATCGACAACG--TCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACC 361850
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| | || | || ||||| ||||| || |||| ||||| || |||||||
Sbjct 361849 AGCAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTGTCGGACTACA 361790
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||||| ||||| | || || ||| | ||||||||
Sbjct 361789 ACATCCAGAAGGAGTCCACTCTACATCTCGTGCTGCG 361753
Score = 105 bits (116), Expect = 7e-18
Identities = 97/123 (79%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| ||||| |||||| | ||||| ||||| | || | ||| ||||||||||| ||
Sbjct 362102 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTCGCCGGCAAACAGCTTGAG 362043
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|||| |||||||| ||||||||||||||| ||||| ||||||| || |||| ||
Sbjct 362042 GACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACGCTCCACCTGGTCCTC 361983
Query 38457 CGT 38459
|||
Sbjct 361982 CGT 361980
>seq53
Length=59568
Score = 107 bits (118), Expect = 2e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| |||||| | ||||| ||||| || || | ||| |||||
Sbjct 12549 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 12490
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
|| || || || | |||||||| ||||||||||||||| ||||| |||| |||||
Sbjct 12489 CAACTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACTCTGCAC 12430
Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471
||||| || ||| | | ||||||
Sbjct 12429 TTGGTCCTCCGTCTCCGTGGCGGC 12406
>seq267
Length=290730
Score = 89.7 bits (98), Expect = 5e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| ||||| |||||| | ||||| ||||| ||||| | ||| ||||| ||||| ||
Sbjct 207303 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAG 207244
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|| | ||||| || |||||||||||||| ||||| | || || ||| | |||||
Sbjct 207243 GATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCATCTAGTGCTC 207184
Query 38457 CG 38458
||
Sbjct 207183 CG 207182
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500169855232640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |