Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq418 246 4e-60 seq465 147 3e-30 seq378 141 1e-28 seq427 107 2e-18 >seq418 Length=238847 Score = 246 bits (272), Expect = 4e-60 Identities = 502/743 (68%), Gaps = 6/743 (1%) Strand=Plus/Minus Query 7406 TTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCT 7465 ||||| || || ||||| || || | | |||||| | ||| | ||||| || Sbjct 76713 TTCTTGTGCTTGCGTTTGAATTCGTTTGTGAAGTGGTTGACGAGACGGTTGTCGAAGTCC 76654 Query 7466 TCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATG 7525 |||||||||||||| || || || || || | ||||| || |||||||| | || ||| Sbjct 76653 TCACCACCCAAGTGAGTGTCACCGGCAGTAGACTTGACCTCGAAGATACCCTCCTCGATG 76594 Query 7526 TTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG 7585 | | | ||| ||||| || ||||| ||||||||||| || ||||| ||||| || Sbjct 76593 GTCAGGAGCGAGACATCGAAGGTACCGCCACCCAGGTCGAAGATGAGGACGTTGCGCTCA 76534 Query 7586 TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATA 7645 | | | ||||| || |||||||| ||||| || || || || || || || || ||| Sbjct 76533 CCTTGGGTCTTCTTGTCAAGACCGTAGGCGATGGCGGCAGCTGTGGGCTCGTTGATGATA 76474 Query 7646 CGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCG 7705 || || ||| ||||| || || | || || || || || || || || || ||| Sbjct 76473 CGGAGGACGTTGAGGCCGGCGATGAGACCTGCGTCCTTGGTAGCCTGACGCTGGGAGTCG 76414 Query 7706 TTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCC 7765 || ||||| || || || || || || |||| |||| | |||||| || || || Sbjct 76413 TTGAAGTAAGCGGGAACAGTGACAACGGCGTTGTTGACGGTGCCACCGAGGTAGGACTCT 76354 Query 7766 GCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTC 7825 ||| | || |||| ||||| || ||||| ||||| ||||| |||| | || ||| Sbjct 76353 GCGGTTTCCCTCATCTTGGTGAGGACCATGGATGAGATCTCCTCAGGTGTGAAAGTCTTC 76294 Query 7826 GTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTA 7885 || || || || || | | || | || || |||| | ||| ||||| Sbjct 76293 TCCTCGCCCTTGAACTCGATCTGGATGACAGGCTT-GCCGC--CCTTATCGATGACCTTG 76237 Query 7886 TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGA 7945 | | | | ||||| || | || |||| || | ||||| | ||||| || Sbjct 76236 AAGGGGAAGTGCTTCATGTCAGCCTGAACCTCAGCATCGGCGAACTTGCGGCCGATGAGG 76177 Query 7946 CGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCC 8005 |||||||| ||||| |||||||| |||||||||||| ||||||||||| | ||| Sbjct 76176 CGCTTTGCGTCAAAGACTGTGTTGGCGGGGTTCATGGCGACCTGGTTCTTCGCAGAGTCT 76117 Query 8006 CCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCT 8065 ||||| ||||| || | || || || || ||| |||| || || || || || || Sbjct 76116 CCGATGAGACGCTC---GGTGTCGGTGAAGGCAACGAACGAGGGCGTTGTGCGGTTACCC 76060 Query 8066 TGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTT 8125 ||||| || || || || || | |||||||| ||| |||||||| || ||||| Sbjct 76059 TGGTCATTGGCGATGATCTCAATGCGGTCGTCCCTGAAGATACCGACGCAAGAGTACGTG 76000 Query 8126 GTTCCTAAATCAATACCGATTGC 8148 || || | || |||||||| || Sbjct 75999 GTACCCAGGTCGATACCGATCGC 75977 Score = 158 bits (174), Expect = 2e-33 Identities = 261/377 (69%), Gaps = 0/377 (0%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | ||||| ||||| ||||||| || ||||| || || |||||||||||||| Sbjct 77330 TCACCAGACAAGATAGCGGCCTGGACCGCAGCACCGTAGGCAACAGCCTCATCGGGGTTG 77271 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || | || || ||||| || | || || | ||| | || | || ||| Sbjct 77270 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGAAGTCGGAGACCATCTTCTGGACCTTTGGG 77211 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || |||||||||||||| ||||| || | || | || || || ||||| | | Sbjct 77210 ATACGGGTGGATCCACCGACCAAGACGATCTCGTGGACGGTAGACTTGTCAATCTTGGCG 77151 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || || || ||||| ||||| ||||| | |||| ||||| ||| Sbjct 77150 TCGCGGAGGACACGCTCAACAGGCTCCATGGTGGAGCGGAAGAGGTCCTGGCACAGCTCC 77091 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || || || |||||||| ||||| || ||||| || | || ||| | | || || || Sbjct 77090 TCGAAGCGGGCACGGGTGATGGAGGTGTAGAAGTCGATACCCTCGAACAGGGAGTCGATC 77031 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 || |||| || || || | || || | || ||||| || ||||| || || ||||| Sbjct 77030 TCGATGGAGGTCTGCGCGGAGGAGGACAGGGTACGCTTGGCCCGCTCGCAAGCAGTTCGG 76971 Query 7370 AAACGACGAAGGGCACG 7386 | ||| || || ||||| Sbjct 76970 AGACGGCGGAGAGCACG 76954 >seq465 Length=132516 Score = 147 bits (162), Expect = 3e-30 Identities = 344/517 (67%), Gaps = 13/517 (3%) Strand=Plus/Plus Query 105562 ACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCG-- 105619 || || |||||||| | ||| |||||||| | ||| | |||||||| ||| |||| Sbjct 113347 ACTCGCTTCATGAAGAGATCGGGAATCCAGAGGGCGTAGAAGAGGTCACGAG--CTCGTA 113404 Query 105620 CCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATG 105679 ||||||| | ||| || ||| || | || || || ||| | ||| |||||||||| Sbjct 113405 CCTCTTCCTTACCGTGGTTCTTGCGTAGGTCAAGGAAGCCGAATACATCCGCGTGCCATG 113464 Query 105680 GTTCTAAATAGACTGCAATAGACCCTTTACGACGC------CCCGCTTGATTGACATATC 105733 | || | |||| || | || || | | ||| || | |||| ||| || | Sbjct 113465 GCTCGAGGTAGATGGCGAAAGCACC---AGGGCGCTTGTTGCCACCCTGATCGACGTAGC 113521 Query 105734 TTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTTC 105793 ||||| ||| || || || | ||| || || | ||||| ||||||||| || || | Sbjct 113522 GAGCGGTGTTGTTGTAGACACGGAGCATCGGGATGAGACCATTGGATGTTCCGTTGGTGC 113581 Query 105794 CACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCCC 105853 ||| ||| | || | ||||| | ||| || | | ||||| || ||||| Sbjct 113582 CACCAATGTAGGAGCCGGTGGCACGGATGCGGTGCACATTGAGTCCAATGCCGCCAGCGG 113641 Query 105854 ACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCCT 105913 ||| ||| ||||||| || | ||| ||||| ||||||||||| || || |||| Sbjct 113642 TCTTGGAGATCAACGCACACGTCTTCAGTGTGTCGTAGATACCGTCGATGCTGTCCTCCT 113701 Query 105914 TATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAG 105973 | | | || ||||| || |||||||| || || |||| || || || |||||||| | Sbjct 113702 TCATGTCGATGAGGAAGCAGGATGACATCTGAGGGTTGGGCGTTCCCGCGTTGAACAGCG 113761 Query 105974 TTGGTGTTGCATGAATGAACAAACCTTTCGATAACGCTTCGTATGTTTCCAGGACGTGAT 106033 | || | ||||| |||| | || ||| | ||||| || || | | | | | Sbjct 113762 TAGGCGAGGCATGTGTGAAGTACTTTTGCGACATGTAGTCGTAGGTCTCAATGGCCTTCT 113821 Query 106034 CAATATCGTGTCCATGAATACCAATAGCGACGCGCAT 106070 |||| || | ||||| || |||| ||||| ||||| Sbjct 113822 CAATGTCTTCGCCATGGATGCCAACGGCGACACGCAT 113858 >seq378 Length=255854 Score = 141 bits (156), Expect = 1e-28 Identities = 234/337 (69%), Gaps = 7/337 (2%) Strand=Plus/Plus Query 7424 AACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTA 7483 ||||||| |||||| |||||| | | |||||||||| |||||||| || || Sbjct 45015 AACTCTTTCTTGAAGTGGTCAAGGAGGTTGGTGTCGAAATCTTGTCCACCCAAATGGGTG 45074 Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543 || || ||||| || ||||| |||| ||| || | ||||| | | || ||||| Sbjct 45075 TCACCAGCGGTGGCCTTGACAGTGAAGACACCACCCTGAATGTGCAGAAGAGACACATCG 45134 Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT---- 7599 || ||||||||||| || || | ||||| |||||| | || | ||| | || Sbjct 45135 AAAGTACCACCACCGAGATCGTAGATGAGGACGTTCCTCTCCT--TCTCGGACTTTCCGG 45192 Query 7600 -ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658 | |||||||||| |||||||| || || || || || || || ||||| ||| ||| | Sbjct 45193 AACCGAGACCGTAAGCGATAGCTGCGGCGGTAGGCTCGTTGATGATACGGAGAACGTTGA 45252 Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718 |||||||||| | | || || || || ||||| || || ||||| |||||||| | Sbjct 45253 GGCCAGCAATGGCACCGGCGTCCTTGGTAGCTTGACGCTGGTTGTCGTTGAAGTAGGCGG 45312 Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 | || || | ||| || | | || ||| | ||||| Sbjct 45313 GCACGGTGATGACGGCCTTCTCAACCTTCATGCCGAG 45349 >seq427 Length=214910 Score = 107 bits (118), Expect = 2e-18 Identities = 239/358 (67%), Gaps = 3/358 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || ||||| |||||||| | || || || || ||||| | | || || || ||||| Sbjct 198318 TCAAAATCCTCACCACCAAGATGGGTGTCACCAGCGGTAGACTGAACCTCGAAAATACCC 198377 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || || | | | || ||||| || ||||||||||| || ||| | | ||| || Sbjct 198378 GACTCGATAGTGAGAATGGACACATCGAAAGTACCACCACCAAGATCATAGACGAGAACC 198437 Query 7577 TTCGTATCGTC---GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | ||| | ||| | ||| ||||||||||| || | ||| ||||| || || Sbjct 198438 TGGCGCTCGCCCTTGTCGGCGACCTTGTCGAGACCGTAGGCCAAAGCAGCCGCAGTGGGC 198497 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || | || ||| ||| ||| || || || ||||| | || || || || || Sbjct 198498 TCGTTGACAACACGGAGAACGTTGAGACCGGCGATAGTGCCAGCGTCCTTTGTGGCGGCA 198557 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || || | ||||| |||||||| || || || || || |||| | | || || ||| Sbjct 198558 CGCTGGGCGTCGTTGAAGTAGGCGGGAACGGTGACAACAGCGTTCTTCACGGGCTCGCCG 198617 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 ||||| || || || || ||||| ||| |||||||| | || ||||| |||| Sbjct 198618 AGATAGCTCTCAGCAATCTCCTTCATCTTGCCGAGAACCATAGCGGAGATCTCCTCAG 198675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635129060655640