Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq43 154 2e-32 seq6 120 4e-22 seq68 89.7 6e-13 >seq43 Length=72025 Score = 154 bits (170), Expect = 2e-32 Identities = 289/421 (69%), Gaps = 29/421 (7%) Strand=Plus/Plus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 |||||| ||||||||||| || | |||||||| || ||| || ||||||||| Sbjct 59246 GAAACCATCCATTTCTGTTAGGATCTGGTTGAGTGTGGCTTCGCGTTCATCGTTG----- 59300 Query 11652 CATACCACCTGCCGAACGCTT-CTTA------------CCGACAGCGTCAATCTCATCGA 11698 ||||| |||||| | ||| || | |||||||||||| |||| Sbjct 59301 ----CCACC-GCCGAAATTTGACTTTGATCGGGCACGTCCAATAGCGTCAATCTCGTCGA 59355 Query 11699 TGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCG 11758 |||| | ||| |||||| | | || || | |||| || || || |||||| | Sbjct 59356 TGAAGATGATGCACGGTGTGCTCTTGCGCGCGTTGGCGAAGAGATCTCGCACACGCGATG 59415 Query 11759 CTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA-ACACTGAATGAAGGGAACA 11817 | |||||||| |||||||| || ||||| | | | || ||||| || |||||| ||| Sbjct 59416 CACCAACACCGACGAACATTTCGACGAACTCGGAGCCACTCACACTAAA-GAAGGGCACA 59474 Query 11818 TTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCG 11877 |||||| ||||| |||| || || || |||||||| ||||| || | |||| Sbjct 59475 CCAGACTCGCCAGCTGTGGCCTTGGCCAGTAGTGTCTTACCGGTACCTGGAGGGCCAGAC 59534 Query 11878 AGAAGGGCGCCACGGGGGATCTTGGCACCA--CTTCCAAAGTAGCGCTCAGGCTTCTTGA 11935 || | ||||||||| ||||||||||||||| |||| | | ||| |||| | ||| | Sbjct 59535 AGGATGGCGCCACGAGGGATCTTGGCACCAAGCTTC--TGGAAACGCCCAGGGTCCTTAA 59592 Query 11936 GGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATCGGTGA 11995 |||| | |||| |||| || ||| | ||| || ||| || || |||| |||| || Sbjct 59593 GGAAAGCAACAAACTCCATAATTTCTTGCTTAGCCTCGTCCATGCCTGCAACGTCGGCGA 59652 Query 11996 A 11996 | Sbjct 59653 A 59653 >seq6 Length=114070 Score = 120 bits (132), Expect = 4e-22 Identities = 331/499 (66%), Gaps = 19/499 (4%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || || || || | ||| |||||||| || ||||| || |||| |||||||| ||||| Sbjct 15668 TAATCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCGCGAGCGAGATGTTCTCCATG 15609 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGA--TTGGTGGTTGACCAACTTGTTTCAGAAGAC 119325 ||||| || || || ||| ||| ||| |||||| ||| |||| ||| || | Sbjct 15608 AAGTCGAAGGGGTTGGTGGCGTTGTAGACCTTGGTG-TTG-CCAAGGGCCAACAGCAGGC 15551 Query 119326 GATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTAC 119385 | || | ||| ||||||| || | | |||| |||||||| || | ||| | Sbjct 15550 GGTCAGCGACGAACTCGATGTACTGGCACATGAGGGTGGAATTCATGCCGAGCAGAGCGC 15491 Query 119386 ACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGT 119445 | |||||||| ||| || ||| | || ||| ||||| ||||| || | | ||||| | Sbjct 15490 AGGGGAGAGCTTCGGTGAGGAACTCCTGCTCAATCTCAACAGCCTCGGTGATGATGGCCT 15431 Query 119446 -----GAATAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAA 119500 | || || ||| | ||| | | ||||| | | | | ||||| Sbjct 15430 TGACGGCATCCTTGCTGGGGCGGGTGT---TGAGAAGAGAGAAGAGCAGGCAT--GCAAA 15376 Query 119501 TTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCAT 119560 || || | || || || || ||||||||||| || |||| ||| || ||||| Sbjct 15375 GTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCAT 15316 Query 119561 GAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTC 119620 || || | ||||| ||||| ||||||| ||| || |||||||| ||||| Sbjct 15315 CAGACCGCGCTTCTTGAGCCAGAAGATGGACGCGAAAGAGCCGCTGAAGAAGATACCCTC 15256 Query 119621 CACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GAACCACT 119676 || || || |||| ||||| | |||||| || ||| |||||| || ||||| Sbjct 15255 AACGGCAGCAAAGGCGACGAGACGGTTGGCAAAA-GTGGAGTTCTTGTCTGAGATCCACT 15197 Query 119677 TGAGAGCCCAGTTGGCCTT 119695 |||||||||||| |||||| Sbjct 15196 TGAGAGCCCAGTCGGCCTT 15178 >seq68 Length=426709 Score = 89.7 bits (98), Expect = 6e-13 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 195178 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGCGTTCGACCCGCGTA 195237 Query 136777 GGGAACAGC 136785 | || |||| Sbjct 195238 GTGACCAGC 195246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588972532403800