Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq465 241 2e-58 seq6 114 2e-20 >seq465 Length=132516 Score = 241 bits (266), Expect = 2e-58 Identities = 572/855 (67%), Gaps = 11/855 (1%) Strand=Plus/Plus Query 106456 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 106515 ||||||||||| || |||| ||||| || || |||||| | | ||| |||| | Sbjct 113016 TGGAAGGGCGAGGGAAGCCAGGTTGCACACGGCGACCTCATCAGGAGCAGTGAACTCGAC 113075 Query 106516 AATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTT 106575 ||| || || || | |||||| || ||| || || | ||||| ||||| ||| | Sbjct 113076 AATCTCAGTGCAGAGGTTGGAGCTGCGAATGGTACCGAGGTTCTTCTGGTTGGACTTCCT 113135 Query 106576 GTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAAT 106635 |||||| || |||||||| |||||| | || | || ||||| ||||| | || |||||| Sbjct 113136 GTTGCAAGCGTCCTTGTACAGCATGAACGGGTTGCCAGTCTCAGTCTGCGCCTCGAGAAT 113195 Query 106636 TGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTAC 106693 || | ||| | | || | ||| | ||| | || | ||| | ||| |||||| Sbjct 113196 GGCGTACCAGAGCTTCTG-GGCACGAACAGTCTCG-CGACCCTTGTTCTCGCGCTCGTAA 113253 Query 106694 TTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT 106753 |||||||| | || ||||| || || |||||| ||||| || || || Sbjct 113254 CGGGTGTAGAGCTCCTCGAACTCATCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTG 113313 Query 106754 GGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 106813 || || | || | ||| | || ||| | || ||||||||||| || || |||||| Sbjct 113314 GGGCACATGAGTGTCCACTCGCCGTTCTCTTGCACTCGCTTCATGAAGAGATCGGGAATC 113373 Query 106814 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 106873 || |||| | ||||| || | | || ||||||| | ||| ||||| |||| Sbjct 113374 CAGAGGGCGTAGAAGAGGTCACGAGCTCGTACCTCTTCCTTACCGTGGTTCTTGCGTAGG 113433 Query 106874 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC---- 106929 |||||||| | | | |||||||||||||||||| || |||| |||| || || Sbjct 113434 TCAAGGAAGCCGAATACATCCGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGG 113493 Query 106930 CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 106989 | | | | ||| | |||| || ||||| || ||| ||| | || || ||||| || Sbjct 113494 CGCTTGTTG-CCACCCTGATCGACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATCGG 113552 Query 106990 AATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATC 107049 || | ||||| ||| || || || || | ||| || |||| | | Sbjct 113553 GATGAGACCATTGGATGTTCCGTTGGTGCCACCAATGTAGGAGCCGGTGGCACGGATGCG 113612 Query 107050 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 107109 || | | | ||||| || ||||| ||| ||||| ||||||| | | || || Sbjct 113613 GTGCACATTGAGTCCAATGCCGCCAGCGGTCTTGGAGATCAACGCACACGTCTTCAGTGT 113672 Query 107110 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 107169 | |||||||||| ||| ||||||||| || |||| |||||||| |||||||| Sbjct 113673 GTCGTAGATACCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTG 113732 Query 107170 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGG 107228 || | || || || || ||||| || || || | || || |||| ||| ||| | Sbjct 113733 AGGGTTGGGCGTTCCCGCGTTGAACAGCGTAGGCGAGGCATGTGTGAA-GTACTTTTGCG 113791 Query 107229 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCA 107288 |||| | |||||| ||||| | | | ||||||||||| || |||||||| | ||| | Sbjct 113792 ACATGTAGTCGTAGGTCTCAATGGCCTTCTCAATGTCTTCGCCATGGATGCCAACGGCGA 113851 Query 107289 CACGCATAAACATGT 107303 ||||||| | ||||| Sbjct 113852 CACGCATGAGCATGT 113866 >seq6 Length=114070 Score = 114 bits (126), Expect = 2e-20 Identities = 333/506 (66%), Gaps = 24/506 (5%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||||||||| || | || ||||| ||||| Sbjct 15668 TAATCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCGCGAGCGAGATGTTCTCCATG 15609 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA--TGGGTGGCACC-----CCAACTTGTTTGAG 117098 ||||| || || || | ||||| | | | |||| || ||||| || Sbjct 15608 AAGTCGAAGGGGTTGGTGGCGTTGTAGACCTTGGTGTTGCCAAGGGCCAAC-------AG 15556 Query 117099 GAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG 117158 || || || | || |||| ||||||| | |||| || ||||| |||| || Sbjct 15555 CAGGCGGTCAGCGACGAACTCGATGTACTGGCACATGAGGGTGGAATTCATGCCGAGCAG 15496 Query 117159 ATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGAT 117218 | || ||||| || || || |||| | | |||||||||||| ||||| | | ||| Sbjct 15495 AGCGCAGGGGAGAGCTTCGGTGAGGAACTCCTGCTCAATCTCAACAGCCTCGGTGATGAT 15436 Query 117219 GGCGTGGATAGTTTCGGTAGTGGGTC---TATTACGCAAAGTCTTGAAGAGCTCCACGGC 117275 ||| | || | || | |||| | | || | | || ||||||| || Sbjct 15435 GGCCTTGACGGCATCCTTGCTGGGGCGGGTGTTGAGAAGAGA---GAAGAGCAGGCATGC 15379 Query 117276 AAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGG 117335 ||| || ||| | ||||| || ||||| || || || || |||||| || ||||| Sbjct 15378 AAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGG 15319 Query 117336 CATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATAC 117394 ||| ||||| |||||||| | ||| | || | ||| ||| || ||| ||||||||||| Sbjct 15318 CATCAGACCGCGCTTCTTGAGCCAGAAGATGGACGC-GAAAGAGCCGCTGAAGAAGATAC 15260 Query 117395 CCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCA-AAC 117453 |||| || ||||| || | || || | ||| || | | ||| |||| | | | | Sbjct 15259 CCTCAACGGCAGCAAAGGCGACGAGACGGTTGGCAAAAGTG-GAGTTCTTGTCTGAGATC 15201 Query 117454 CATTTCATTGCCCATTTCGCCTTCTT 117479 || || | ||||| | |||||||| Sbjct 15200 CACTTGAGAGCCCAGTCGGCCTTCTT 15175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589977326488040