Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq465 241 2e-58
seq6 114 2e-20
>seq465
Length=132516
Score = 241 bits (266), Expect = 2e-58
Identities = 572/855 (67%), Gaps = 11/855 (1%)
Strand=Plus/Plus
Query 106456 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 106515
||||||||||| || |||| ||||| || || |||||| | | ||| |||| |
Sbjct 113016 TGGAAGGGCGAGGGAAGCCAGGTTGCACACGGCGACCTCATCAGGAGCAGTGAACTCGAC 113075
Query 106516 AATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTT 106575
||| || || || | |||||| || ||| || || | ||||| ||||| ||| |
Sbjct 113076 AATCTCAGTGCAGAGGTTGGAGCTGCGAATGGTACCGAGGTTCTTCTGGTTGGACTTCCT 113135
Query 106576 GTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAAT 106635
|||||| || |||||||| |||||| | || | || ||||| ||||| | || ||||||
Sbjct 113136 GTTGCAAGCGTCCTTGTACAGCATGAACGGGTTGCCAGTCTCAGTCTGCGCCTCGAGAAT 113195
Query 106636 TGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTAC 106693
|| | ||| | | || | ||| | ||| | || | ||| | ||| ||||||
Sbjct 113196 GGCGTACCAGAGCTTCTG-GGCACGAACAGTCTCG-CGACCCTTGTTCTCGCGCTCGTAA 113253
Query 106694 TTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT 106753
|||||||| | || ||||| || || |||||| ||||| || || ||
Sbjct 113254 CGGGTGTAGAGCTCCTCGAACTCATCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTG 113313
Query 106754 GGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 106813
|| || | || | ||| | || ||| | || ||||||||||| || || ||||||
Sbjct 113314 GGGCACATGAGTGTCCACTCGCCGTTCTCTTGCACTCGCTTCATGAAGAGATCGGGAATC 113373
Query 106814 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 106873
|| |||| | ||||| || | | || ||||||| | ||| ||||| ||||
Sbjct 113374 CAGAGGGCGTAGAAGAGGTCACGAGCTCGTACCTCTTCCTTACCGTGGTTCTTGCGTAGG 113433
Query 106874 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC---- 106929
|||||||| | | | |||||||||||||||||| || |||| |||| || ||
Sbjct 113434 TCAAGGAAGCCGAATACATCCGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGG 113493
Query 106930 CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 106989
| | | | ||| | |||| || ||||| || ||| ||| | || || ||||| ||
Sbjct 113494 CGCTTGTTG-CCACCCTGATCGACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATCGG 113552
Query 106990 AATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATC 107049
|| | ||||| ||| || || || || | ||| || |||| | |
Sbjct 113553 GATGAGACCATTGGATGTTCCGTTGGTGCCACCAATGTAGGAGCCGGTGGCACGGATGCG 113612
Query 107050 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 107109
|| | | | ||||| || ||||| ||| ||||| ||||||| | | || ||
Sbjct 113613 GTGCACATTGAGTCCAATGCCGCCAGCGGTCTTGGAGATCAACGCACACGTCTTCAGTGT 113672
Query 107110 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 107169
| |||||||||| ||| ||||||||| || |||| |||||||| ||||||||
Sbjct 113673 GTCGTAGATACCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTG 113732
Query 107170 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGG 107228
|| | || || || || ||||| || || || | || || |||| ||| ||| |
Sbjct 113733 AGGGTTGGGCGTTCCCGCGTTGAACAGCGTAGGCGAGGCATGTGTGAA-GTACTTTTGCG 113791
Query 107229 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCA 107288
|||| | |||||| ||||| | | | ||||||||||| || |||||||| | ||| |
Sbjct 113792 ACATGTAGTCGTAGGTCTCAATGGCCTTCTCAATGTCTTCGCCATGGATGCCAACGGCGA 113851
Query 107289 CACGCATAAACATGT 107303
||||||| | |||||
Sbjct 113852 CACGCATGAGCATGT 113866
>seq6
Length=114070
Score = 114 bits (126), Expect = 2e-20
Identities = 333/506 (66%), Gaps = 24/506 (5%)
Strand=Plus/Minus
Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045
|| || || || |||||||| |||||||||||||| || | || ||||| |||||
Sbjct 15668 TAATCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCGCGAGCGAGATGTTCTCCATG 15609
Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA--TGGGTGGCACC-----CCAACTTGTTTGAG 117098
||||| || || || | ||||| | | | |||| || ||||| ||
Sbjct 15608 AAGTCGAAGGGGTTGGTGGCGTTGTAGACCTTGGTGTTGCCAAGGGCCAAC-------AG 15556
Query 117099 GAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG 117158
|| || || | || |||| ||||||| | |||| || ||||| |||| ||
Sbjct 15555 CAGGCGGTCAGCGACGAACTCGATGTACTGGCACATGAGGGTGGAATTCATGCCGAGCAG 15496
Query 117159 ATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGAT 117218
| || ||||| || || || |||| | | |||||||||||| ||||| | | |||
Sbjct 15495 AGCGCAGGGGAGAGCTTCGGTGAGGAACTCCTGCTCAATCTCAACAGCCTCGGTGATGAT 15436
Query 117219 GGCGTGGATAGTTTCGGTAGTGGGTC---TATTACGCAAAGTCTTGAAGAGCTCCACGGC 117275
||| | || | || | |||| | | || | | || ||||||| ||
Sbjct 15435 GGCCTTGACGGCATCCTTGCTGGGGCGGGTGTTGAGAAGAGA---GAAGAGCAGGCATGC 15379
Query 117276 AAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGG 117335
||| || ||| | ||||| || ||||| || || || || |||||| || |||||
Sbjct 15378 AAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGG 15319
Query 117336 CATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATAC 117394
||| ||||| |||||||| | ||| | || | ||| ||| || ||| |||||||||||
Sbjct 15318 CATCAGACCGCGCTTCTTGAGCCAGAAGATGGACGC-GAAAGAGCCGCTGAAGAAGATAC 15260
Query 117395 CCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCA-AAC 117453
|||| || ||||| || | || || | ||| || | | ||| |||| | | | |
Sbjct 15259 CCTCAACGGCAGCAAAGGCGACGAGACGGTTGGCAAAAGTG-GAGTTCTTGTCTGAGATC 15201
Query 117454 CATTTCATTGCCCATTTCGCCTTCTT 117479
|| || | ||||| | ||||||||
Sbjct 15200 CACTTGAGAGCCCAGTCGGCCTTCTT 15175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589977326488040
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