Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq465 356 4e-93 seq6 244 2e-59 >seq465 Length=132516 Score = 356 bits (394), Expect = 4e-93 Identities = 1181/1819 (65%), Gaps = 47/1819 (3%) Strand=Plus/Plus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755 ||||| |||||| || || ||||| | | | |||||| ||||| | ||||| Sbjct 112242 GTTCAATGACTGAGATTGATCGATGAAGGCACCGCGGTCAGCAGCCATCTGGATGATGGT 112301 Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGG 212815 | ||| |||| ||||| ||||||||| | | ||| || ||||||| | ||| Sbjct 112302 ACGCTGCGAGATTTCCCATACGGTCTTGTAAAGGGTCTTGGTCTCTTCTGGGATGTTGGG 112361 Query 212816 GATGTTCTGCACAGACCCCCTGTGT---ATGGTCAGCTGCAGGCGCATGTCCTCGTTCCA 212872 ||| |||| | || || | | | ||| | | | | ||||| ||| ||| Sbjct 112362 GATCCTCTGGATGGAACCACCATCTGCAATGATACGGTTCTT---CATGTTCTCAGACCA 112418 Query 212873 GAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGA 212932 ||| ||| || | ||| ||||| || ||||||||| | |||||| ||||| | Sbjct 112419 GAGACCCATGTCGACGAGGTCCTTGAGGAGCCAAGGGTTGACGACCTGGAACTCACCAGC 112478 Query 212933 GAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAG 212992 ||||| | | ||| | ||| || ||||| ||||||| || ||||||||| || || Sbjct 112479 CAGCACACGACGTGAGTAGATGTTCGAGGTGTATGGCTCGAAGCACTCGTTGTTTCCAAG 112538 Query 212993 AATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTG 213052 |||||| | ||| ||| || |||||||| || ||||||||| ||| | ||| || || Sbjct 112539 AATCTGCGAAGTCGAGGCAGTAGGCATGGGCGCAACCAGGAGAGAGTTGCGCACACCATG 112598 Query 213053 CTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTT 213112 || |||| | | | | ||||||||||| | |||| ||| | Sbjct 112599 CTGAGCGATCTTGTCCTTCAACGAAGCCCAGTCCCAAAGGTCAGA-AGGAG--------T 112649 Query 213113 CACGTTCCACATGTCAAACTGCAAGATG-CCTTTGCTCACGGGGCTGCCCTGGTAAGAGG 213171 |||| ||| | || |||| ||| || || ||| ||| || |||| ||| | | Sbjct 112650 CACGCCCCAGAGATCGTACTG-AAGCTGACCCTTGGACACAGGCGAACCCTCGTATGTAG 112708 Query 213172 AGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGG 213231 || || ||| |||||||||| | |||||||||| | || || |||| ||| || | Sbjct 112709 CATATGGACCAAGCTCCTTGGCGATATCGCAGGACGACGTGAGAGCCGCGTGGTAAATTG 112768 Query 213232 TTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGC 213291 | || || |||| |||||||||||||||| || | ||| || |||| | | Sbjct 112769 TCTCGAAGATCTGGGTGTTGAGCTTCTTGGCTTCAGTCGACTCAAAAGGCAGACGAAGGG 112828 Query 213292 GTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAG 213351 |||| ||||||| || ||||| || || | |||||||| || || | | || Sbjct 112829 CGAGGAAAGCATCAGCAAGACCCTGAACACCAAGACCGATGGGCCTATGGCGGAAATTGC 112888 Query 213352 ACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGG 213410 | | || |||||||| ||||| |||| |||||||||||||||||||| || Sbjct 112889 TGCGGCGTGC-CTCCTCCACAGGGTAGTGGTTGACCTCGATGATCTTGTTGAGGTTACGT 112947 Query 213411 GTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGC 213470 ||| | || |||| || | | || | | | | |||| || | | || | Sbjct 112948 GTGACGACCATGGTCACCTCGTGGAGCTTGTGGAAGTCGAACTCGCCACGCTTGTAGTCG 113007 Query 213471 ACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTG 213530 ||||| || ||||||| | ||||||||||| ||||| ||||| | || | ||| Sbjct 113008 ACAAAGGATGGAAGGGCGAGGGAAGCCAGGTTGCACACGGCGACCTCATCAGGAGCAGTG 113067 Query 213531 TACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTT 213590 |||| | ||||| ||||| |||||| || || ||||| || ||||||| ||||| Sbjct 113068 AACTCGACAATCTCAGTGCAGAGGTTGGAGCTGCGAATGGTACCGAGGTTCTTCTGGTTG 113127 Query 213591 GACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGAC 213650 ||||| |||| || |||||||| |||||| | ||| || ||||| ||| | | Sbjct 113128 GACTTCCTGTTGCAAGCGTCCTTGTACAGCATGAACGGGTTGCCAGTCTCAGTCTGCGCC 113187 Query 213651 ACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTA 213710 | || || | |||||| | | ||| || | | | || | | | | | Sbjct 113188 TCGAGAATGGCGTACCAGAGCTTCTGGGC----ACGAACAGTCTCGCGACCCTTGTTCTC 113243 Query 213711 GC-CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGG 213769 || |||||| | ||||||||| | ||| || | ||| |||| | | || || || Sbjct 113244 GCGCTCGTAACGGGTGTAGAGCTCCTCGAACTCATCGCCGTAGACGTCGGCAAGACCAGG 113303 Query 213770 ACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAG 213829 || ||| |||||||| |||| || |||| ||| |||| || |||||| || Sbjct 113304 GCACTCGTTGGGGCACATGAGTGTCCACTCGCCGTTCTCTTGCACTCGCTTCATGAAGAG 113363 Query 213830 GTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGG-TCCTCCTCTCGTCCACTCCAGAGT 213888 || || | ||| || ||| ||| ||||| | | || | | ||| ||| || || Sbjct 113364 ATCGGGAATCCAGAGGGCGTAGAAGAGGTCACGAGCTCGTAC-CTCTTCCTTACCGTGGT 113422 Query 213889 TTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAA 213948 | ||||| || || || ||| | || | ||||||||||| ||||| | ||||||||| | Sbjct 113423 TCTTGCGTAGGTCAAGGAAGCCGAATACATCCGCGTGCCATGGCTCGAGGTAGATGGCGA 113482 Query 213949 AGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGC 214005 | || || | || | ||||| ||||| || || | || ||||| ||| | Sbjct 113483 AAGCACCAGGGCGCTTGTTGCCACCCTGATCGACGTAGCGAGCGGTGTTGTTGTAGACAC 113542 Query 214006 GCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGG 214065 | || | || | || || ||||| ||||||||| || | || || ||||||| || Sbjct 113543 GGAGCATCGGGATGAGACCATTGGATGTTCCGTTGGTGCCACCAATGTAGGAGCCGGTGG 113602 Query 214066 CCCTCA--GGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCA 214123 | | | | ||| ||| ||| || ||||| || ||| ||||||||||| || || Sbjct 113603 CACGGATGCGGTGCACAT--TGAGTCCAATGCCGCCAGCGGTCTTGGAGATCAACGCACA 113660 Query 214124 GCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCA 214183 | ||| || || ||| ||| | |||||||| || | | || | | |||||| Sbjct 113661 CGTCTTCAGTGTGTCGTAGATACCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCA 113720 Query 214184 GCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCAT 214243 | || | ||| || ||| || || | |||||| ||||| || |||||| | | Sbjct 113721 GGATGACATCTGAGGGTTGGGCGTTCCCGCGTTGAACAGCGTAGGCGAGGCATGTGTGAA 113780 Query 214244 AAACTTGTTAGAGA-GGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGA 214302 |||| | || | | || | ||||||||| | | | ||||| | |||| Sbjct 113781 GTACTTTTGCGACATGTAGTC-GTAGGTCTCAATGGCCTTCTCAATGTCTTCGCCATGGA 113839 Query 214303 TCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCCCT 214362 | | ||| | ||| ||||||||||| || | ||| || |||| ||| | Sbjct 113840 TGCCAACGGCGACACGCATGAGCATGTGCTGTGGGCGCTC--TGCAACCTT----GCCGT 113893 Query 214363 T------GAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAGGAGTAGGTATGAT 214416 | ||| ||||| |||||||| || |||||||| |||||| | |||| | | Sbjct 113894 TGATGCGGAGGAGGTATGAGCGCTCTAGCGTCTTGAAGCCAAAGAACTGGTAGTTGAAGT 113953 Query 214417 CGTTCCCGTGTATGAGGGCAGCGTCCAGCTCTTCCGCGTGCTCTTGGCTCAGCTTGAAAA 214476 || | | || | ||| | || |||||||| ||||| |||||| | | |||| | | Sbjct 113954 CGCGGTCATATACAATGGCCGAGTTGAGCTCTTCAGCGTGATCTTGGATGATCTTGTAGA 114013 Query 214477 TCTCGTCCGAGATCAAGGG 214495 | | ||| ||||||| ||| Sbjct 114014 TGTAGTCTGAGATCATGGG 114032 >seq6 Length=114070 Score = 244 bits (270), Expect = 2e-59 Identities = 365/516 (71%), Gaps = 9/516 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| ||| | | |||||||||||| Sbjct 15672 CTGGTAATCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCGCGAGCGAGATGTTCTC 15613 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| ||||||||||| | ||| || ||| || ||| | |||||| Sbjct 15612 CATGAAGTCGAAGGGGTTGGTGGCGTTGTAGACCTTGGTGTTGCCAAGGGCCAACAGCAG 15553 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | | || |||||| |||||||||| | ||||||||||| |||||||| | || | Sbjct 15552 GCGGTCAGCGACGAACTCGATGTACTGGCACATGAGGGTGGAATTCATGCCGAGCAGAGC 15493 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||| | ||| | ||||| ||||||| ||| |||| || || || | || Sbjct 15492 GCAGGGGAGAGCTTCGGTGAGGAACTCCTGCTCAATCTCAACAGCCTCGGTGATGATGGC 15433 Query 48079 CTTAACGCGGGACT--CTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 ||| ||| || ||| || | ||||| | || | |||||| ||| || Sbjct 15432 CTTGACGGCATCCTTGCTGGGGCGGGTGTTGAGAAGA------GAGAAGAGCAGGCATGC 15379 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| |||||| ||| ||||| ||| ||||||| ||||||||||| ||||| || Sbjct 15378 AAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGG 15319 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | || | || ||||||||||| || | |||||||||||| ||||||||| || Sbjct 15318 CATCAGACCGCGCTTCTTGAGCCAGAAGATGGACGCGAAAGAGCCGCTGAAGAAGATACC 15259 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 ||| || || || || ||| ||| | | | |||| | |||||||||||||||||| Sbjct 15258 CTCAACGGCAGCAAAGGCGACGAGACGGTTGGCAAAAGTGGAGTTCTTGTCTGAGATCCA 15199 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 || |||||||| |||||||| ||||||||| Sbjct 15198 CTTGAGAGCCCAGTCGGCCTTCTTGCGGATGCATGG 15163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931527315600640