Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq465 242 7e-59 seq6 188 1e-42 >seq465 Length=132516 Score = 242 bits (268), Expect = 7e-59 Identities = 951/1474 (65%), Gaps = 55/1474 (4%) Strand=Plus/Plus Query 221406 CGCAAGACTGCGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCT 221465 |||| ||| ||| || || |||||||| || ||||| |||||| ||||||| ||| Sbjct 112736 CGCAGGACGACGTGAGAGCCGCGTGGTAAATTGTCTCGAAGATCTGGGTGTTGAGCTTCT 112795 Query 221466 TGGCCTCGGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTA 221525 |||| || | || || |||| ||| || | || | || || || ||||| | Sbjct 112796 TGGCTTCAGTCGACTCAAAAGGCAGACGAAGGGCGAGGAAAGCATCAGCAAGACCCTGAA 112855 Query 221526 CTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCC-GCTTCTGGCACGGGATAA 221584 | || | |||||||||||| || | ||| ||||| || || ||| || || Sbjct 112856 CACCAAGACCGATGGGCCTATGGCGGAAATTGCT-GCGGCGTGCCTCCTCCACAGGGTAG 112914 Query 221585 AAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGC 221644 |||||| ||||| | ||||||||||| | |||| ||| | ||||||| ||| Sbjct 112915 TGGTTGACCTCGATGATCTTGTTGAGGTTACGTGTGACGACCATGGTCACCTCGTGGAGC 112974 Query 221645 TTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGG 221704 || ||| || | |||||||| | | || | || ||||| | ||| Sbjct 112975 TTGTGG------AAGTCGAACTCGCCACGCTTGTAG------TCGACAAAGGATGGAAGG 113022 Query 221705 GCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCT 221764 || | | |||||||| |||||||| ||||| || || ||| | ||||| Sbjct 113023 GCGAGGGAAGCCAGGTTGCACACGGCGACCTCATCAGGAGCAGTGAACTCGACAATCTCA 113082 Query 221765 GTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCA 221824 || ||||||||| || ||||| || |||| || || || ||||| | ||| | Sbjct 113083 GTGCAGAGGTTGGAGCTGCGAATGGTACCGAGGTTCTTCTGGTTGGACTTCCTGTTGCAA 113142 Query 221825 GCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCC 221884 ||||||||||| ||||| || || ||||||||| ||| ||| | ||||| || | Sbjct 113143 GCGTCCTTGTACAGCATGAACGGGTTGCCAGTCTCAGTCTGCGCCTCGAGAATGGCGTAC 113202 Query 221885 CAGAGTTCTCTGG-CGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTT---TCATACCC 221940 ||||| | ||||| | | || ||| || ||| ||| | ||| || || | Sbjct 113203 CAGAGCT-TCTGGGCACGAACAGTC-TCGCGAC-----CCTTGTTCTCGCGCTCGTAACG 113255 Query 221941 GGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGG 222000 ||| |||||| || |||| || ||||| | ||| | || || || ||| | ||| Sbjct 113256 GGTGTAGAGCTCCTCGAACTCATCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGG 113315 Query 222001 ACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCA 222060 ||||| || |||| | ||| |||| || | || ||||||||| || || ||||| Sbjct 113316 GCACATGAGTGTCCACTCGCCGTTCTCTTGCACTCGCTTCATGAAGAGATCGGGAATCCA 113375 Query 222061 CAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATC 222120 || || | ||||| || | | || ||| ||| |||| ||| || | || || Sbjct 113376 GAGGGCGTAGAAGAGGTCACGAGCTCGTACCTCTTCCTTACCGTGGTTCTTGCGTAGGTC 113435 Query 222121 CAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCG 222180 | || | || | || |||||||| ||||| || |||| ||| | ||| || || || Sbjct 113436 AAGGAAGCCGAATACATCCGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGGCG 113495 Query 222181 CTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGC----GTTGAAGATGCGAAGGGTCG 222236 |||||||||||||||||| || | | || | |||| ||| || || ||| Sbjct 113496 CTTGTTGCCACCCTGATCGACG----TAGCGAGCGGTGTTGTTGTAGACACGGAGCATCG 113551 Query 222237 GTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGT 222296 | | || || |||||| ||||||||||| |||||| | ||| ||| | || Sbjct 113552 GGATGAGACCATTGGATGTTCCGTTGGTGCCACCAATGTAGGAGCCGGTGGCAC---GGA 113608 Query 222297 TACTG-GCAGA--CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGA 222353 | | | ||| | | || || || || ||| || ||||||| || || |||| | Sbjct 113609 TGCGGTGCACATTGAGTCCAATGCCGCCAGCGGTCTTGGAGATCAACGCACACGTCTTCA 113668 Query 222354 GAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACA 222413 | ||||| ||| || || || ||||||||| | || | || || || || |||| Sbjct 113669 GTGTGTCGTAGATACCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACA 113728 Query 222414 TCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCC 222473 |||||| |||| | | ||||| |||||||| || ||| ||||| ||||| Sbjct 113729 TCTGAGGGTTGGGCGTTCCCGCGTTGAACAGCGTAGGCGAGGCATGTGTGAAGTACTTTT 113788 Query 222474 TAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGG 222533 ||||| ||||| ||||| | | | | | |||| || || || || | || Sbjct 113789 GCGACATGTAGTCGTAGGTCTCAATGGCCTTCTCAATGTCTTCGCCATGGATGCCAACGG 113848 Query 222534 CGCATCTCATGTACATGTACTGGGGCCTCTCCACAGGACCCT--TGGAGCTGGAGAGCAG 222591 || | |||| ||||| ||| || | ||| || ||| | | | || ||| || Sbjct 113849 CGACACGCATGAGCATGTGCTGTGGGCGCTCTGCA--ACCTTGCCGTTGATGCGGAGGAG 113906 Query 222592 GTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAAC 222651 ||| || || || |||||||| |||||| | | | || ||||| | | | | || Sbjct 113907 GTATGAGCGCTCTAGCGTCTTGAAGCCAAAGAACTGGTAGTTGAAGTCGCGGTCATATAC 113966 Query 222652 CACGGCGGCGTCCAGCTCCGACTTGTGCTTTACGCTCAACTCGAAAAAGCGCTCAGACAC 222711 | ||| | || ||||| ||| | | | | | || | | | | || || | Sbjct 113967 AATGGCCGAGTTGAGCTCTTCAGCGTGATCTTGGATGATCTTGTAGATGTAGTCTGAGAT 114026 Query 222712 GAGGGGAGCGTTCTCTT--TGGTGTCGGGGTTAACGT-TGTGGTACAG--CTGCCACATG 222766 | || || ||||| | | | |||||| || | ||| |||||| ||| ||| Sbjct 114027 CATGG--GCTGACTCTTGCCGTTCTTGGGGTTGACATATGT-GTACAGATCTGAGACA-- 114081 Query 222767 GCATCAGAGAAC-GTGTCGGGAGTCTGCTTGTGCAGATTCGACACGGCGATCCGAGACGC 222825 || |||||||| | || | ||||||||||| || || || |||||||| || | ||| Sbjct 114082 ACAGCAGAGAACTGCTTCTTG-GTCTGCTTGTGGAGGTTGGATACGGCGATACGCGCCGC 114140 Query 222826 CAAGATACCATAGTCAGGGTGCACGGTGGTCATG 222859 | ||| ||||||| || || ||| |||||| Sbjct 114141 GAGGATGGCATAGTCGGGATGTGTGGTAGTCATG 114174 >seq6 Length=114070 Score = 188 bits (208), Expect = 1e-42 Identities = 340/496 (69%), Gaps = 19/496 (4%) Strand=Plus/Plus Query 25834 TGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 ||||| | ||||||||| ||| || || | | || |||| | | || || || ||||| Sbjct 15187 TGGGCTCTCAAGTGGATCT-CAGACAAGAACTCCACTTTTGCCAACCGTCTCGTCGCCTT 15245 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952 |||||| || ||||| ||||| |||||||| || || ||| ||||||||||||||||| | Sbjct 15246 TGCTGCCGTTGAGGGTATCTTCTTCAGCGGCTCTTTCGCGTCCATCTTCTGGCTCAAGAA 15305 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 | || ||||| || || ||| ||||||||||||||| | | |||||||| | Sbjct 15306 GCGCGGTCTGATGCCAGGTCTTACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCAT 15365 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTC--CACAAACCTTCTCAA 26070 |||| || ||||| |||||||||| | | ||| ||| ||| || ||| Sbjct 15366 GCACACCGACTTTGCATGCCTGCTCTTC-----TCTCTT-CTCAACACCCGCCCCAGCAA 15419 Query 26071 -GAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129 || ||||| | ||||||| |||||||| ||||| ||| ||||||| | Sbjct 15420 GGATGCCGTCAAGGCCATCATCACCGAGGCTGTTGAGATTGAGCAGGAGTTCCTCACCGA 15479 Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189 | |||||||| || |||||| |||| ||||| |||| Sbjct 15480 AGCTCTCCCCTGCGCTCTGCTCGGCATGAATTCCACCCTCATGTGCCAGTACATCGAGTT 15539 Query 26190 TGTGGCCGACCATCTGCTGT--GCCAGCTGGGACTCGCCAGACTCTACAGTACGC--CTA 26245 || || |||| ||||||| ||| || || | ||| |||||| |||| | | Sbjct 15540 CGTCGCTGACCGCCTGCTGTTGGCC--CTTGGCAACACCAAGGTCTACA--ACGCCACCA 15595 Query 26246 ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGA 26305 |||| |||||||| ||||| ||||| ||| | | || |||||||||||||| || ||| Sbjct 15596 ACCCCTTCGACTTCATGGAGAACATCTCGCTCGCGGGCAAGACCAACTTCTTCGAGAAGC 15655 Query 26306 GGGTCGGCGACTATCA 26321 | |||||||| || || Sbjct 15656 GCGTCGGCGATTACCA 15671 Score = 105 bits (116), Expect = 1e-17 Identities = 164/231 (71%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| | |||||||||||||| || || |||||||||||| |||||||||||| || Sbjct 14780 TGGCAAATGTACAAGAAGGCCGAAGCTTCTTTCTGGACCGCCGAGGAGATTGATCTGTCC 14839 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT---AC 25596 ||||| | ||| |||| || | ||| ||||| ||| ||| ||| | || Sbjct 14840 AAGGATCTCCACGACTGGAACAAGCGCCTCAACGACGACGAGCGTTTCTTCATCTCCCAC 14899 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || | || ||||| || ||||| ||||| || || |||||||| || |||| | ||| Sbjct 14900 GTTCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCAACGAGAACCTCGTCGAGCGCTTC 14959 Query 25657 ACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| || || | | ||| ||||| || |||||||| |||||||| Sbjct 14960 TCCAGCGAGGTTCAAATAC-CAGAGGCACGATGCTTCTACGGCTTCCAGAT 15009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928839331426240