Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq418 241 2e-58
seq113 152 7e-32
seq427 141 1e-28
seq378 122 1e-22
seq168 114 2e-20
seq43 96.9 5e-15
>seq418
Length=238847
Score = 241 bits (266), Expect = 2e-58
Identities = 468/689 (68%), Gaps = 3/689 (0%)
Strand=Plus/Plus
Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358
|| || |||||||| | || || || ||||| || || ||| | | | || ||
Sbjct 75977 GCGATCGGTATCGACCTGGGTACCACGTACTCTTGCGTCGGTATCTTCAGGGACGACCGC 76036
Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418
| ||||| ||| | |||||||| || ||||| ||||| || |||| ||||||||| ||
Sbjct 76037 ATTGAGATCATCGCCAATGACCAGGGTAACCGCACAACGCCCTCGTTCGTTGCCTTCACC 76096
Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478
|| | || |||||| | ||||| | || || || ||| || |||||||| |||
Sbjct 76097 GACACCGAGCGTCTCATCGGAGACTCTGCGAAGAACCAGGTCGCCATGAACCCCGCCAAC 76156
Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538
|| ||||||||||| ||||| || || || |||||||| | ||| | || || |
Sbjct 76157 ACAGTCTTTGACGCAAAGCGCCTCATCGGCCGCAAGTTCGCCGATGCTGAGGTTCAGGCT 76216
Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598
|| || ||| ||| | | | ||| || || | || | |||||| | || |
Sbjct 76217 GACATGAAGCACTTCCCCT-TCAAG--GTCATCGATAAGGGCGGCAAGCCTGTCATCCAG 76273
Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTG 195658
| || || | || ||| |||| || | || || || || || || ||||| |
Sbjct 76274 ATCGAGTTCAAGGGCGAGGAGAAGACTTTCACACCTGAGGAGATCTCATCCATGGTCCTC 76333
Query 195659 ATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718
| ||||||| ||| || || || || | | | ||| || || || | || |||||
Sbjct 76334 ACCAAGATGAGGGAAACCGCAGAGTCCTACCTCGGTGGCACCGTCAACAACGCCGTTGTC 76393
Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778
||||| || |||||||||| || || || || ||||| || |||||||| | | ||
Sbjct 76394 ACTGTTCCCGCTTACTTCAACGACTCCCAGCGTCAGGCTACCAAGGACGCAGGTCTCATC 76453
Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838
|| || || ||| || | || ||||| || || ||||| || || || || || |||
Sbjct 76454 GCCGGCCTCAACGTCCTCCGTATCATCAACGAGCCCACAGCTGCCGCCATCGCCTACGGT 76513
Query 195839 CTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACG 195898
|| |||||||| | | | || || || | ||||| || || ||||| |||||
Sbjct 76514 CTTGACAAGAAGACCCAAGGTGAGCGCAACGTCCTCATCTTCGACCTGGGTGGCGGTACC 76573
Query 195899 TTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGT 195958
|| |||||||| || || | || || | ||||| ||||| || ||| ||||||| |||
Sbjct 76574 TTCGATGTCTCGCTCCTGACCATCGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCCGGT 76633
Query 195959 GATACTCATCTAGGTGGTGAAGATTTCGA 195987
|| ||||| | |||||||| || |||||
Sbjct 76634 GACACTCACTTGGGTGGTGAGGACTTCGA 76662
>seq113
Length=382967
Score = 152 bits (168), Expect = 7e-32
Identities = 164/217 (76%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916
|| ||||||| ||||| || || || || || || || || ||||| || || || ||||
Sbjct 361972 GTGGTATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACGCTTGAAGTAGAGT 361913
Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976
| || ||||||||||| ||| |||| |||||| || || ||||| |||||||| || |
Sbjct 361912 CATCCGACACAATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGG 361853
Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036
| ||||| || | || ||||| || || |||||||| || || || || || | || |
Sbjct 361852 ACCAGCAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTGTCGGACT 361793
Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073
||||| | || |||||||| |||||||| || || ||
Sbjct 361792 ACAACATCCAGAAGGAGTCCACTCTACATCTCGTGCT 361756
Score = 93.3 bits (102), Expect = 6e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 171954 AGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGA 172013
||| ||||| |||||||| || || ||||| || | || || || || |||||||||||
Sbjct 362103 AGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTCGCCGGCAAACAGCTTGA 362044
Query 172014 AGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073
|| || || ||||| | || |||||| | || |||||||| || || ||||| || ||
Sbjct 362043 GGACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACGCTCCACCTGGTCCT 361984
Query 172074 AAGGCTTCGGGGTGGT 172089
| || || ||||||
Sbjct 361983 CCGTCTCCGCGGTGGT 361968
>seq427
Length=214910
Score = 141 bits (156), Expect = 1e-28
Identities = 233/333 (70%), Gaps = 11/333 (3%)
Strand=Plus/Minus
Query 195662 AAGATGAAGGAGACTGCGGA-ATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGAC 195720
||||||||||||| ||| || | || || | || | | ||||| | || ||||| ||
Sbjct 198646 AAGATGAAGGAGATTGCTGAGAGCTATC-TCGGCGAGCCCGTGAAGAACGCTGTTGTCAC 198588
Query 195721 TGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGC 195780
|| || || ||||||| || | || || || ||||||||||||| |||| ||
Sbjct 198587 CGTTCCCGCCTACTTCAACGACGCCCAGCGTGCCGCCACAAAGGACGCTGGCACTATCGC 198528
Query 195781 GGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840
||||| ||| ||| | || |||| || || || |||||||| | || || |||||
Sbjct 198527 CGGTCTCAACGTTCTCCGTGTTGTCAACGAGCCCACTGCGGCTGCTTTGGCCTACGGTCT 198468
Query 195841 GGACAAGA------ACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGG 195894
|||||| |||||| ||| | || | ||| |||||| ||||||||
Sbjct 198467 CGACAAGGTCGCCGACAAGGGCGAGCGCCAG---GTTCTCGTCTATGATCTTGGTGGTGG 198411
Query 195895 TACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGC 195954
||| || ||||| || |||||| ||| || ||||| ||||| || || |||| ||
Sbjct 198410 TACTTTCGATGTGTCCATTCTCACTATCGAGTCGGGTATTTTCGAGGTTCAGTCTACCGC 198351
Query 195955 TGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987
|||||| || ||||| |||||||| ||||| ||
Sbjct 198350 TGGTGACACCCATCTTGGTGGTGAGGATTTTGA 198318
>seq378
Length=255854
Score = 122 bits (134), Expect = 1e-22
Identities = 254/374 (68%), Gaps = 6/374 (2%)
Strand=Plus/Minus
Query 196061 GCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCT 196120
|| || ||||| || |||||||||| || |||||||| || |||||||| | ||| |
Sbjct 44920 GCCCTCCGTCGTCTCCGGACTGCATGCGAGCGTGCCAAGCGTACTCTCTC--CAACGCCA 44863
Query 196121 C--AAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTA 196178
| | || | |||||||| || ||| |||| ||||| |||||| | | | || |
Sbjct 44862 CCCAGACCACTGTTGAGATCGACTCGCTGTTCGACGGTGAGGACTTCAACGCCAACATCA 44803
Query 196179 CCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTG-TATGGAACCTGTT 196237
||||||| ||||| || || || ||| | || ||| | | | | || ||||||
Sbjct 44802 CCCGTGCTCGTTTCGAGGACTTGAAC-CAGAAGGCTTTCGCCGGCACTCTTGACCCTGTT 44744
Query 196238 GAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTG 196297
| || || || ||||| || || | ||| |||||||| || || || || ||
Sbjct 44743 GCTCAGGTTCTCAAGGACGCCAACATTGCCAAGGAGAAGGTTGACGAGATCGTTCTCGTT 44684
Query 196298 GGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAA 196357
|| || || |||||||| || ||||| || || | || ||||||| | ||
Sbjct 44683 GGTGGCTCCACCCGTATCCCCAAGATCCAGAAGCTCCTCAGCGACTTCTTCGGTGGCAAG 44624
Query 196358 GATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCT 196417
| | | || | |||||||| || || || ||||| || ||||| |||||||||||
Sbjct 44623 AAGCTCGAGAAGAGCATCAACCCCGACGAGGCTGTTGCCTACGGTGCCGCCGTTCAGGCC 44564
Query 196418 GCTATTCTCTCAGG 196431
| ||| ||||| ||
Sbjct 44563 GGTATCCTCTCCGG 44550
Score = 118 bits (130), Expect = 1e-21
Identities = 192/273 (70%), Gaps = 5/273 (2%)
Strand=Plus/Minus
Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778
|| || || || ||||||| || || || || || || |||||||| | ||| |||
Sbjct 45319 ACCGTGCCCGCCTACTTCAACGACAACCAGCGTCAAGCTACCAAGGACGCCGGTGCCATT 45260
Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838
|| || || ||| ||| | || ||||| || || || || || || || ||||| |||
Sbjct 45259 GCTGGCCTCAACGTTCTCCGTATCATCAACGAGCCTACCGCCGCAGCTATCGCTTACGGT 45200
Query 195839 CT-GGACAAGAACAAGGACGAA---GATAAAAATGTATTGATCTTTGATCTCGGTGGTGG 195894
|| || | | ||| ||| || | || || | |||| ||||||||||||||
Sbjct 45199 CTCGGTTCCGGA-AAGTCCGAGAAGGAGAGGAACGTCCTCATCTACGATCTCGGTGGTGG 45141
Query 195895 TACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGC 195954
||| || ||||| || ||||| | ||| | |||||| | ||| || ||||| || ||
Sbjct 45140 TACTTTCGATGTGTCTCTTCTGCACATTCAGGGTGGTGTCTTCACTGTCAAGGCCACCGC 45081
Query 195955 TGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987
|||||| || ||| | ||||| ||||||||||
Sbjct 45080 TGGTGACACCCATTTGGGTGGACAAGATTTCGA 45048
>seq168
Length=321351
Score = 114 bits (126), Expect = 2e-20
Identities = 223/327 (68%), Gaps = 8/327 (2%)
Strand=Plus/Plus
Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721
||||||||||||||||| || || | |||||| || | || || | || || || |||
Sbjct 102928 AAGATGAAGGAGACTGCCGAGTCCTACATGGGCAAGAACGTCAAGAACGCCGTCGTCACT 102987
Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781
|| || || ||||||| || || || || || || || |||||||||| | |||||
Sbjct 102988 GTTCCCGCCTACTTCAACGACTCCCAGCGTCAAGCTACCAAGGACGCTGGTCAGATTGCT 103047
Query 195782 GGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840
||||| || ||| ||| | | |||| || || || || ||||| ||||||| |||||
Sbjct 103048 GGTCTGAA-TGTCCTTCGTGTCGTCAACGAGCCTACCGCTGCTGCCCTTGCTTACGGTCT 103106
Query 195841 GGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900
|||||| || || | | || ||| |||||||| ||||| || ||
Sbjct 103107 TGACAAGGCCACCGATGCCG------TCGTCGCTGTCTACGATCTCGGAGGTGGCACATT 103160
Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960
||| | || | ||| | ||| | || | || || || ||| | || |||||
Sbjct 103161 CGATATTTCCATCCTCGAGATTCAGAACGGCGTCTTTGAGGTCAAGTCCACCAACGGTGA 103220
Query 195961 TACTCATCTAGGTGGTGAAGATTTCGA 195987
||||| || |||||||| || |||||
Sbjct 103221 CACTCACCTTGGTGGTGAGGACTTCGA 103247
>seq43
Length=72025
Score = 96.9 bits (106), Expect = 5e-15
Identities = 219/320 (68%), Gaps = 12/320 (4%)
Strand=Plus/Minus
Query 198456 GATGTTGAGGGTATCGACTCAGCTAAGGATGAGCTCGAGGAGATTGTTGATTTTCTTAAA 198515
|| |||| || || ||| |||||| | || | |||| |||||| ||| |||||
Sbjct 59647 GACGTTGCAGGCATGGACGAGGCTAAGCAAGAAATTATGGAGTTTGTTGCTTTCCTTAAG 59588
Query 198516 AACCCCGAAAAGTACTATGGAAG--TGGTGCCCGAATCCCACGTGGTGCTCTTCTCGCCG 198573
|||| | | | | |||| ||||||| ||||| ||||| || | || | |
Sbjct 59587 GACCCTGGGCGTTTCCA--GAAGCTTGGTGCCAAGATCCCTCGTGGCGCCATCCTGTCTG 59530
Query 198574 GTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCC 198633
| | || ||||| ||||| || || || || || | || || || || |||| |
Sbjct 59529 GCCCTCCAGGTACCGGTAAGACACTACTGGCCAAGGCCACAGCTGGCGAGTCTGGTGTGC 59470
Query 198634 CCTTTCTTCAGTGCTCCGCGGC---GAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTA 198690
|||| ||| |||| | | ||| ||||| | |||| |||||||| |||||||||||
Sbjct 59469 CCTT-CTTTAGTG-TGAGTGGCTCCGAGTT-CGTCGAAATGTTCGTCGGTGTTGGTGCAT 59413
Query 198691 AGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAAAATCA-ACCATGTATCATCTTCATT 198749
||| || || || ||||| | | || || || | || ||| || |||||||||||
Sbjct 59412 CGCGTGTGCGAGATCTCTTCGCCAACGCGCGC-AAGAGCACACCGTGCATCATCTTCATC 59354
Query 198750 GATGAGATTGACGCTGTTGG 198769
|| |||||||||||| ||||
Sbjct 59353 GACGAGATTGACGCTATTGG 59334
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657858526835120
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