Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq322 116 1e-20 seq465 104 7e-17 seq462 84.2 6e-11 >seq322 Length=270006 Score = 116 bits (128), Expect = 1e-20 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| | |||||| | | ||| | | |||||||||||| ||||||||| || || || Sbjct 74590 CATGACGTCTTCGAGAGCCTTTACGAGACGACGCTGAATGTAACCAGTTTCAGCAGTCTT 74649 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| ||||| || ||||| |||||||| |||| || || ||||| | ||| | || Sbjct 74650 GACAGCGGTATCGATGAGACCTTCACGACCAGCCATGGCGTGAAAGAAGAACTCCGCAGG 74709 Query 302685 TCGT--AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCG 302742 ||| | || | ||| || ||| ||||||| || || || | ||| || || | |||| Sbjct 74710 -CGTCAAACCACGCAAGTAA-GAGTTCTCAACAAAGCCGCGAGACTCCGGAGAGTAGTCG 74767 Query 302743 AACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCT 302794 |||||| || |||||||| || | || || | ||| | || ||||||| Sbjct 74768 TCCTTGGTGAAATGTGGCAGAGTACGGTACTTGAATCCGAAAGGAATACGCT 74819 Score = 95.1 bits (104), Expect = 4e-14 Identities = 109/146 (75%), Gaps = 3/146 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | || ||| || |||||| | || ||||| |||||||| ||||||||| Sbjct 73814 AGAATTTCCTTAAGACGTGGTACACCAAGAGTGACGTT---CTTGGACGACACACCAGCA 73870 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| || || || || | |||||||| ||||||||||| || || || | Sbjct 73871 AAATGGAAGGTGTTTAGCGTCATTTGAGTAGCAGGCTCACCAATGGACTGAGCAGCGAGG 73930 Query 301933 ATACCAACCATTTCTCCTGGTGCTAC 301958 | ||||||||| || || || || || Sbjct 73931 ACACCAACCATCTCGCCCGGCGCCAC 73956 >seq465 Length=132516 Score = 104 bits (114), Expect = 7e-17 Identities = 543/866 (63%), Gaps = 3/866 (0%) Strand=Plus/Plus Query 155634 TCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGAT 155693 || ||||||||| ||| ||||| || || ||||| || | ||||||||||| || Sbjct 113071 TCGACAATCTCAGTGCAGAGGTTGGAGCTGCGAATGGTACCGAGGTTCTTCTGGTTGGAC 113130 Query 155694 TTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCC 155753 || ||||| ||||| |||||||| || ||| | ||| | || ||||| |||| || || Sbjct 113131 TTCCTGTTGCAAGCGTCCTTGTACAGCATGAACGGGTTGCCAGTCTCAGTCTGCGCCTCG 113190 Query 155754 AGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCA 155813 ||||| |||||| | ||||| || || | || || ||| Sbjct 113191 AGAATGGCGTACCAGAGCTTCTGGGCACGAACAGTCTCGCGACCCTTGTTCTCGCGCTCG 113250 Query 155814 TATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTA 155873 || | || ||| | | || || ||||| || || |||||||||| Sbjct 113251 TAACGGGTGTAGAGCTCCTCGAACTCATCGCCGTAGACGTCGGCAAGACCAGGGCACTCG 113310 Query 155874 TCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTC 155933 | |||||| | || | ||| || | || |||| ||| || | ||| Sbjct 113311 TTGGGGCACATGAGTGTCCACTCGCCGTTCTCTTGCACTCGCTTCATGAAGAGATCGGGA 113370 Query 155934 GCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGT 155993 ||| | || ||||| ||||| | || | ||| || | ||||| ||||| ||| Sbjct 113371 ATCCAGAGGGCGTAGAAGAGGTCACGAGCTCGTACCTCTTCCTTACCGTGGTTCTTGCGT 113430 Query 155994 AGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCA 156053 || || | ||| | | ||| | || |||||| || || || || ||| |||| Sbjct 113431 AGGTCAAGGAAGCCGAATACATCCGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCA 113490 Query 156054 ---TTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATA 156110 | | |||||||||||||| || || ||||| || || ||| |||||| ||||| Sbjct 113491 GGGCGCTTGTTGCCACCCTGATCGACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATC 113550 Query 156111 GGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACA 156170 || || | ||||||||| || || ||||| || | ||| | || || | | || | Sbjct 113551 GGGATGAGACCATTGGATGTTCCGTTGGTGCCACCAATGTAGGAGCCGGTGGCACGGATG 113610 Query 156171 TTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACA 156230 || | || |||||||| || || | || || || || || ||| | Sbjct 113611 CGGTGCACATTGAGTCCAATGCCGCCAGCGGTCTTGGAGATCAACGCACACGTCTTCAGT 113670 Query 156231 GTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAAT 156290 || | | | ||||| || || || || | ||| | || |||| || | Sbjct 113671 GTGTCGTAGATACCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATC 113730 Query 156291 TGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTA 156350 ||||| || ||||| |||||||| || ||||| | ||||| | || ||||| | Sbjct 113731 TGAGGGTTGGGCGTTCCCGCGTTGAACAGCGTAGGCGAGGCATGTGTGAAGTACTTTTGC 113790 Query 156351 GACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAG 156410 ||||| || ||||| ||||| | |||||||| | || || || | | | | Sbjct 113791 GACATGTAGTCGTAGGTCTCAATGGCCTTCTCAATGTCTTCGCCATGGATGCCAACGGCG 113850 Query 156411 ACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTAT 156470 || | ||| ||| ||||| || |||||| ||| | || | || || || |||||| Sbjct 113851 ACACGCATGAGCATGTGCTGTGGGCGCTCTGCAACCTTGCCGTTGATGCGGAGGAGGTAT 113910 Query 156471 GCGCGTTCCAGAGTTTTAAACCCGAA 156496 | ||| || || || || || || || Sbjct 113911 GAGCGCTCTAGCGTCTTGAAGCCAAA 113936 >seq462 Length=146995 Score = 84.2 bits (92), Expect = 6e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| | |||||||||||| |||||||| || |||||||| || ||||| || || Sbjct 89607 GCACCGTGCGCAATCATACAATCGCGCTCCATCTCTCCGAAACGCAGCCCACCGTCACGG 89666 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAG 251573 || | ||| ||| ||||||| || || || Sbjct 89667 GCACGACCTTCGACAGGCTGGCGGGTCAG 89695 Score = 84.2 bits (92), Expect = 6e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||||| || ||||||||| ||||| || ||||| ||||||| | || || ||| Sbjct 89961 TGGGCAATTGTCATACGAGACGGAATGGCGTGGGGGTTGATGACCAAATCAGGAGTCAAG 90020 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTG 251957 || ||| ||||||||||| | ||| | || || || | ||||| || ||||| || Sbjct 90021 CCCTCACTTGTGAAGGGCATGT-CTTCTTGTCGGTATGTGATACCAATGGTACCCTTCTG 90079 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||||||||| ||||| || ||||| Sbjct 90080 TCCGTGACGAGAAGCAAACTTGTCGCCAAT 90109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471808718040727