Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq322 116 1e-20
seq465 104 7e-17
seq462 84.2 6e-11
>seq322
Length=270006
Score = 116 bits (128), Expect = 1e-20
Identities = 167/232 (72%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624
||| | |||||| | | ||| | | |||||||||||| ||||||||| || || ||
Sbjct 74590 CATGACGTCTTCGAGAGCCTTTACGAGACGACGCTGAATGTAACCAGTTTCAGCAGTCTT 74649
Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684
||||| ||||| || ||||| |||||||| |||| || || ||||| | ||| | ||
Sbjct 74650 GACAGCGGTATCGATGAGACCTTCACGACCAGCCATGGCGTGAAAGAAGAACTCCGCAGG 74709
Query 302685 TCGT--AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCG 302742
||| | || | ||| || ||| ||||||| || || || | ||| || || | ||||
Sbjct 74710 -CGTCAAACCACGCAAGTAA-GAGTTCTCAACAAAGCCGCGAGACTCCGGAGAGTAGTCG 74767
Query 302743 AACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCT 302794
|||||| || |||||||| || | || || | ||| | || |||||||
Sbjct 74768 TCCTTGGTGAAATGTGGCAGAGTACGGTACTTGAATCCGAAAGGAATACGCT 74819
Score = 95.1 bits (104), Expect = 4e-14
Identities = 109/146 (75%), Gaps = 3/146 (2%)
Strand=Plus/Plus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | || ||| || |||||| | || ||||| |||||||| |||||||||
Sbjct 73814 AGAATTTCCTTAAGACGTGGTACACCAAGAGTGACGTT---CTTGGACGACACACCAGCA 73870
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| ||||| || || || || | |||||||| ||||||||||| || || || |
Sbjct 73871 AAATGGAAGGTGTTTAGCGTCATTTGAGTAGCAGGCTCACCAATGGACTGAGCAGCGAGG 73930
Query 301933 ATACCAACCATTTCTCCTGGTGCTAC 301958
| ||||||||| || || || || ||
Sbjct 73931 ACACCAACCATCTCGCCCGGCGCCAC 73956
>seq465
Length=132516
Score = 104 bits (114), Expect = 7e-17
Identities = 543/866 (63%), Gaps = 3/866 (0%)
Strand=Plus/Plus
Query 155634 TCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGAT 155693
|| ||||||||| ||| ||||| || || ||||| || | ||||||||||| ||
Sbjct 113071 TCGACAATCTCAGTGCAGAGGTTGGAGCTGCGAATGGTACCGAGGTTCTTCTGGTTGGAC 113130
Query 155694 TTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCC 155753
|| ||||| ||||| |||||||| || ||| | ||| | || ||||| |||| || ||
Sbjct 113131 TTCCTGTTGCAAGCGTCCTTGTACAGCATGAACGGGTTGCCAGTCTCAGTCTGCGCCTCG 113190
Query 155754 AGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCA 155813
||||| |||||| | ||||| || || | || || |||
Sbjct 113191 AGAATGGCGTACCAGAGCTTCTGGGCACGAACAGTCTCGCGACCCTTGTTCTCGCGCTCG 113250
Query 155814 TATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTA 155873
|| | || ||| | | || || ||||| || || ||||||||||
Sbjct 113251 TAACGGGTGTAGAGCTCCTCGAACTCATCGCCGTAGACGTCGGCAAGACCAGGGCACTCG 113310
Query 155874 TCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTC 155933
| |||||| | || | ||| || | || |||| ||| || | |||
Sbjct 113311 TTGGGGCACATGAGTGTCCACTCGCCGTTCTCTTGCACTCGCTTCATGAAGAGATCGGGA 113370
Query 155934 GCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGT 155993
||| | || ||||| ||||| | || | ||| || | ||||| ||||| |||
Sbjct 113371 ATCCAGAGGGCGTAGAAGAGGTCACGAGCTCGTACCTCTTCCTTACCGTGGTTCTTGCGT 113430
Query 155994 AGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCA 156053
|| || | ||| | | ||| | || |||||| || || || || ||| ||||
Sbjct 113431 AGGTCAAGGAAGCCGAATACATCCGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCA 113490
Query 156054 ---TTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATA 156110
| | |||||||||||||| || || ||||| || || ||| |||||| |||||
Sbjct 113491 GGGCGCTTGTTGCCACCCTGATCGACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATC 113550
Query 156111 GGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACA 156170
|| || | ||||||||| || || ||||| || | ||| | || || | | || |
Sbjct 113551 GGGATGAGACCATTGGATGTTCCGTTGGTGCCACCAATGTAGGAGCCGGTGGCACGGATG 113610
Query 156171 TTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACA 156230
|| | || |||||||| || || | || || || || || ||| |
Sbjct 113611 CGGTGCACATTGAGTCCAATGCCGCCAGCGGTCTTGGAGATCAACGCACACGTCTTCAGT 113670
Query 156231 GTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAAT 156290
|| | | | ||||| || || || || | ||| | || |||| || |
Sbjct 113671 GTGTCGTAGATACCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATC 113730
Query 156291 TGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTA 156350
||||| || ||||| |||||||| || ||||| | ||||| | || ||||| |
Sbjct 113731 TGAGGGTTGGGCGTTCCCGCGTTGAACAGCGTAGGCGAGGCATGTGTGAAGTACTTTTGC 113790
Query 156351 GACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAG 156410
||||| || ||||| ||||| | |||||||| | || || || | | | |
Sbjct 113791 GACATGTAGTCGTAGGTCTCAATGGCCTTCTCAATGTCTTCGCCATGGATGCCAACGGCG 113850
Query 156411 ACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTAT 156470
|| | ||| ||| ||||| || |||||| ||| | || | || || || ||||||
Sbjct 113851 ACACGCATGAGCATGTGCTGTGGGCGCTCTGCAACCTTGCCGTTGATGCGGAGGAGGTAT 113910
Query 156471 GCGCGTTCCAGAGTTTTAAACCCGAA 156496
| ||| || || || || || || ||
Sbjct 113911 GAGCGCTCTAGCGTCTTGAAGCCAAA 113936
>seq462
Length=146995
Score = 84.2 bits (92), Expect = 6e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
|||||||| | |||||||||||| |||||||| || |||||||| || ||||| || ||
Sbjct 89607 GCACCGTGCGCAATCATACAATCGCGCTCCATCTCTCCGAAACGCAGCCCACCGTCACGG 89666
Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAG 251573
|| | ||| ||| ||||||| || || ||
Sbjct 89667 GCACGACCTTCGACAGGCTGGCGGGTCAG 89695
Score = 84.2 bits (92), Expect = 6e-11
Identities = 110/150 (73%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898
||||| || ||||||||| ||||| || ||||| ||||||| | || || |||
Sbjct 89961 TGGGCAATTGTCATACGAGACGGAATGGCGTGGGGGTTGATGACCAAATCAGGAGTCAAG 90020
Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTG 251957
|| ||| ||||||||||| | ||| | || || || | ||||| || ||||| ||
Sbjct 90021 CCCTCACTTGTGAAGGGCATGT-CTTCTTGTCGGTATGTGATACCAATGGTACCCTTCTG 90079
Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987
||||||||||||| ||||| || |||||
Sbjct 90080 TCCGTGACGAGAAGCAAACTTGTCGCCAAT 90109
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471808718040727
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