Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq465 167 3e-35 seq423 152 6e-31 seq6 152 6e-31 seq15 145 9e-29 seq400 107 2e-17 seq90 86.0 8e-11 >seq465 Length=132516 Score = 167 bits (184), Expect = 3e-35 Identities = 217/300 (72%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| ||||||||||| || |||| ||| |||| |||||||| || | ||| || ||||| Sbjct 113508 CTGATCGACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATCGGGATGAGACCATTGGA 113567 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||||| | | ||||| ||||| ||| || | |||| | | || Sbjct 113568 TGTTCCGTTGGTGCCACCAATGTAGGAGCCGGTGGCACGGATGCGGTGCACATTGAGTCC 113627 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 |||||||| || | ||||||||| | ||| ||| || || ||||||||||| || || Sbjct 113628 AATGCCGCCAGCGGTCTTGGAGATCAACGCACACGTCTTCAGTGTGTCGTAGATACCGTC 113687 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| |||||||||| | ||| ||||| || || | || |||| | ||| || Sbjct 113688 GATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGAGGGTTGGGCGTTCC 113747 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||||| ||||| |||| || ||||| ||| |||||||| ||||||||| Sbjct 113748 CGCGTTGAACAGCGTAGGCGAGGCATGTGTGAAGTACTTTTGCGACATGTAGTCGTAGGT 113807 >seq423 Length=224451 Score = 152 bits (168), Expect = 6e-31 Identities = 138/171 (81%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 1592131 GTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCG 1592189 ||||||| || |||| ||| | ||||| ||| | ||||| ||| | ||||| || | Sbjct 100516 GTGGGACCAGAAGTTCATGC-AGGTCGACCAGGAGATGCTCTTCGAGATCATCCTTGCTG 100574 Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||||||||||||| | || ||||| | || |||||| | || |||||||||| Sbjct 100575 CCAACTACCTCGACATCAAGGCGCTTCTCGACGTCGGCTGCAAGACCGTCGCCAACATGA 100634 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||| ||||| |||||||||||||| || |||||| || ||| Sbjct 100635 TCAAGGGCAAGTCCCCCGACGAGATCCGCAAGACGTTCAACATCCAGAACG 100685 >seq6 Length=114070 Score = 152 bits (168), Expect = 6e-31 Identities = 225/315 (71%), Gaps = 4/315 (1%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||||| |||||| |||||| ||||||||||||||| |||||||||| Sbjct 15677 GCCTTCTGGTAATCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCGCGAGCGAGATG 15618 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | |||||| ||| | || || | | Sbjct 15617 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGACCTTGGTGTTGCCAAGGGCCAAC 15558 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||||||||| ||||| |||||||||||||||||||||||| || |||||||||| Sbjct 15557 AGCAGGCGGTCAGCGACGAACTCGATGTACTGGCACATGAGGGTGGAATTCATGCCGAGC 15498 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | ||| | | ||||| | ||| ||||| || |||||| |||| Sbjct 15497 AGAGCGCAGGGGAGAGCTTCGGTGAGGAACTCCTGCTCAATCTCAACAGCCTCGGTGATG 15438 Query 868931 ATCTGCCTG--GGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGG 868988 || | || |||| || | |||| | || ||| | | | |||||||||| | Sbjct 15437 ATGGCCTTGACGGCATCCTTGCTG-GGGC-GGGTGTTGAGAAGAGAGAAGAGCAGGCATG 15380 Query 868989 CAAAGTCGCAGTGCA 869003 |||||||| ||||| Sbjct 15379 CAAAGTCGGTGTGCA 15365 Score = 118 bits (130), Expect = 1e-20 Identities = 179/254 (70%), Gaps = 3/254 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || |||||||||||||| ||| | |||||| | ||| Sbjct 15030 GAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCATCGTGCCTCTGGTATTTGA 14971 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| | ||| || || | ||||||||| |||||||| ||| ||||||||| Sbjct 14970 ACCTCGCTGGAGAAGCGCTCGACGAGGTTCTCGTTGACGATGCCATCGGAGGCGGCGAAG 14911 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGTGG 869809 || || || ||||| ||| ||| |||||||||||| ||| || ||||| | Sbjct 14910 AAGGCGAGAACGTGGGAGATGAAGAAACGCTCGTCGTCGTTGAGGCGCTTGTTCCAGTCG 14851 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | || | || || | ||||||||||||||||| || || |||||||| ||| Sbjct 14850 TGGAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCTTCGGCCTTCTTG 14791 Query 869870 TACATCTCCCATAC 869883 ||||| | ||| || Sbjct 14790 TACATTTGCCAGAC 14777 Score = 114 bits (126), Expect = 2e-19 Identities = 145/195 (74%), Gaps = 11/195 (6%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| || ||| | |||||| |||| || || ||||| || ||||||||| Sbjct 15362 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCATCAGACCGCGCTTC 15303 Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 |||||||| ||||||| ||| |||| ||| ||| ||||| ||||| ||||| ||||| Sbjct 15302 TTGAGCCAGAAGATGGACGC-GAAAGAGCCGCTGAAGAAGATACCCTCAACGGCAGCAAA 15244 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGC 869355 | ||| ||| || | |||||| ||| ||| | ||||| ||||||||| | || Sbjct 15243 GGCGACGAGACGGTTGGCAAAAGTG--GAG----TTCTTGTCTGAGATCCACTTGAGAGC 15190 Query 869356 CCAGTCGGCCTTTTT 869370 |||||||||||| || Sbjct 15189 CCAGTCGGCCTTCTT 15175 >seq15 Length=106889 Score = 145 bits (160), Expect = 9e-29 Identities = 174/235 (74%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 1852020 TGACCTCGTCGGGATCGTCGAGGCCG---ATCTTGGAGGCGGCCTCGCTGGCGCTCATCT 1852076 |||| |||||| | ||||||| || || || ||| ||| ||| ||||||||||| Sbjct 86512 TGACTGCGTCGGCGTTGTCGAGGACGTCGATTTTCGAGTCGGGGTCGGAGGCGCTCATCT 86571 Query 1852077 TGCCGCTCTCGGTGAGGCCCGGCACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGC 1852136 |||||| || | || || || || | ||||| | ||||||| ||| | | |||| Sbjct 86572 TGCCGCCCTGG---AGACCGGGGACCATGGGGTTCATCAGGTGGGCGCGTTCCTTGTAGC 86628 Query 1852137 CGAGGACCGGCAGGTGGTCGCGCGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAA 1852196 |||| || || || || | |||||| ||||||||||||||| ||||| | Sbjct 86629 CGAGCTTGGGGAGCGCTTCTTTGGCGAGGGCAAAGATCTTGCGCTGGTCGACACCGCCGA 86688 Query 1852197 ACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAG 1852251 | ||| |||| |||||||||| |||||||||||| |||||||||||||||||||| Sbjct 86689 ATTGGACGTCTACGTCGAGGTACTGCTCGTCGAGAGCCTGCATGAGCGGGTAGAG 86743 >seq400 Length=252672 Score = 107 bits (118), Expect = 2e-17 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104 |||||||||| |||||||| |||||||||||| | ||| || | || || || | Sbjct 141648 AGGACAGCATAGGCGGCACAGTGACGTGCGTGATCAGAAACTGTCCAACCGGTCTTGGGG 141707 Query 19105 AGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164 |||| ||||| |||||| |||||||| || || ||||||||||| || ||||| || | Sbjct 141708 AGCCATGCTTCGACAAGCTCGAGGCCAAACTGGCACACGCCATGCTTTCCATCCCAGCAA 141767 Query 19165 CCAAGGGATTCGAGATTGG 19183 | ||||| || || ||||| Sbjct 141768 CAAAGGGCTTTGAAATTGG 141786 >seq90 Length=398350 Score = 86.0 bits (94), Expect = 8e-11 Identities = 157/224 (70%), Gaps = 7/224 (3%) Strand=Plus/Minus Query 733092 GGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTGGGCAGCGTGCGCTCCACC 733151 ||||||||| | || ||||| |||||||||||||||||| ||| | | || |||| | Sbjct 264007 GGCGACAAATTCTCCTCGCGTCACGGCCAAAAGGGCACCACCGGCCTCAT-CG-TCCAGC 263950 Query 733152 --GAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGC 733209 || |||||||||| || || | ||| || ||||||||| | || ||||| | Sbjct 263949 AAGAAGACATGCCCT--TCAACG-ACCAAGGCATCAACCCCGACATCATCATGAACCCCC 263893 Query 733210 ACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAGGCCCTCCTGGGCAAGGTGG 733269 ||| | |||| || ||||||||| | ||||| ||| | || |||| ||||| | | Sbjct 263892 ACGGCTTCCCCTCACGCATGACCGTCGGCAAAATGATGGAACTCCTCTCCGGCAAAGCCG 263833 Query 733270 CCTGCCGCGAGGGCTACATCGGCGACGGCACGCCCTTTGGCGGC 733313 | || | | ||| | ||| ||||||| | || |||||| Sbjct 263832 GCGTCCTCAACGGCACCCTCGAATACGGCACCGCGTTCGGCGGC 263789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107100547534307