Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq465 167 3e-35
seq423 152 6e-31
seq6 152 6e-31
seq15 145 9e-29
seq400 107 2e-17
seq90 86.0 8e-11
>seq465
Length=132516
Score = 167 bits (184), Expect = 3e-35
Identities = 217/300 (72%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||| ||||||||||| || |||| ||| |||| |||||||| || | ||| || |||||
Sbjct 113508 CTGATCGACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATCGGGATGAGACCATTGGA 113567
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||||||||| | | ||||| ||||| ||| || | |||| | | ||
Sbjct 113568 TGTTCCGTTGGTGCCACCAATGTAGGAGCCGGTGGCACGGATGCGGTGCACATTGAGTCC 113627
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|||||||| || | ||||||||| | ||| ||| || || ||||||||||| || ||
Sbjct 113628 AATGCCGCCAGCGGTCTTGGAGATCAACGCACACGTCTTCAGTGTGTCGTAGATACCGTC 113687
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
||| ||| |||||||||| | ||| ||||| || || | || |||| | ||| ||
Sbjct 113688 GATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGAGGGTTGGGCGTTCC 113747
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
|||||||| ||||| |||| || ||||| ||| |||||||| |||||||||
Sbjct 113748 CGCGTTGAACAGCGTAGGCGAGGCATGTGTGAAGTACTTTTGCGACATGTAGTCGTAGGT 113807
>seq423
Length=224451
Score = 152 bits (168), Expect = 6e-31
Identities = 138/171 (81%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 1592131 GTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCG 1592189
||||||| || |||| ||| | ||||| ||| | ||||| ||| | ||||| || |
Sbjct 100516 GTGGGACCAGAAGTTCATGC-AGGTCGACCAGGAGATGCTCTTCGAGATCATCCTTGCTG 100574
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
|||||||||||||||||||| | || ||||| | || |||||| | || ||||||||||
Sbjct 100575 CCAACTACCTCGACATCAAGGCGCTTCTCGACGTCGGCTGCAAGACCGTCGCCAACATGA 100634
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300
||||||||||||| ||||| |||||||||||||| || |||||| || |||
Sbjct 100635 TCAAGGGCAAGTCCCCCGACGAGATCCGCAAGACGTTCAACATCCAGAACG 100685
>seq6
Length=114070
Score = 152 bits (168), Expect = 6e-31
Identities = 225/315 (71%), Gaps = 4/315 (1%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||||| |||||| |||||| ||||||||||||||| ||||||||||
Sbjct 15677 GCCTTCTGGTAATCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCGCGAGCGAGATG 15618
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | |||||| ||| | || || | |
Sbjct 15617 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGACCTTGGTGTTGCCAAGGGCCAAC 15558
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
||||||||||| ||||| |||||||||||||||||||||||| || ||||||||||
Sbjct 15557 AGCAGGCGGTCAGCGACGAACTCGATGTACTGGCACATGAGGGTGGAATTCATGCCGAGC 15498
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || | ||| | | ||||| | ||| ||||| || |||||| ||||
Sbjct 15497 AGAGCGCAGGGGAGAGCTTCGGTGAGGAACTCCTGCTCAATCTCAACAGCCTCGGTGATG 15438
Query 868931 ATCTGCCTG--GGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGG 868988
|| | || |||| || | |||| | || ||| | | | |||||||||| |
Sbjct 15437 ATGGCCTTGACGGCATCCTTGCTG-GGGC-GGGTGTTGAGAAGAGAGAAGAGCAGGCATG 15380
Query 868989 CAAAGTCGCAGTGCA 869003
|||||||| |||||
Sbjct 15379 CAAAGTCGGTGTGCA 15365
Score = 118 bits (130), Expect = 1e-20
Identities = 179/254 (70%), Gaps = 3/254 (1%)
Strand=Plus/Minus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|||||||||||||| || |||||||||||||| ||| | |||||| | |||
Sbjct 15030 GAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCATCGTGCCTCTGGTATTTGA 14971
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
||||| | ||| || || | ||||||||| |||||||| ||| |||||||||
Sbjct 14970 ACCTCGCTGGAGAAGCGCTCGACGAGGTTCTCGTTGACGATGCCATCGGAGGCGGCGAAG 14911
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGTGG 869809
|| || || ||||| ||| ||| |||||||||||| ||| || ||||| |
Sbjct 14910 AAGGCGAGAACGTGGGAGATGAAGAAACGCTCGTCGTCGTTGAGGCGCTTGTTCCAGTCG 14851
Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869
| || | || || | ||||||||||||||||| || || |||||||| |||
Sbjct 14850 TGGAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCTTCGGCCTTCTTG 14791
Query 869870 TACATCTCCCATAC 869883
||||| | ||| ||
Sbjct 14790 TACATTTGCCAGAC 14777
Score = 114 bits (126), Expect = 2e-19
Identities = 145/195 (74%), Gaps = 11/195 (6%)
Strand=Plus/Minus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
|| ||||| || ||| | |||||| |||| || || ||||| || |||||||||
Sbjct 15362 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCATCAGACCGCGCTTC 15303
Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
|||||||| ||||||| ||| |||| ||| ||| ||||| ||||| ||||| |||||
Sbjct 15302 TTGAGCCAGAAGATGGACGC-GAAAGAGCCGCTGAAGAAGATACCCTCAACGGCAGCAAA 15244
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGC 869355
| ||| ||| || | |||||| ||| ||| | ||||| ||||||||| | ||
Sbjct 15243 GGCGACGAGACGGTTGGCAAAAGTG--GAG----TTCTTGTCTGAGATCCACTTGAGAGC 15190
Query 869356 CCAGTCGGCCTTTTT 869370
|||||||||||| ||
Sbjct 15189 CCAGTCGGCCTTCTT 15175
>seq15
Length=106889
Score = 145 bits (160), Expect = 9e-29
Identities = 174/235 (74%), Gaps = 6/235 (3%)
Strand=Plus/Plus
Query 1852020 TGACCTCGTCGGGATCGTCGAGGCCG---ATCTTGGAGGCGGCCTCGCTGGCGCTCATCT 1852076
|||| |||||| | ||||||| || || || ||| ||| ||| |||||||||||
Sbjct 86512 TGACTGCGTCGGCGTTGTCGAGGACGTCGATTTTCGAGTCGGGGTCGGAGGCGCTCATCT 86571
Query 1852077 TGCCGCTCTCGGTGAGGCCCGGCACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGC 1852136
|||||| || | || || || || | ||||| | ||||||| ||| | | ||||
Sbjct 86572 TGCCGCCCTGG---AGACCGGGGACCATGGGGTTCATCAGGTGGGCGCGTTCCTTGTAGC 86628
Query 1852137 CGAGGACCGGCAGGTGGTCGCGCGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAA 1852196
|||| || || || || | |||||| ||||||||||||||| ||||| |
Sbjct 86629 CGAGCTTGGGGAGCGCTTCTTTGGCGAGGGCAAAGATCTTGCGCTGGTCGACACCGCCGA 86688
Query 1852197 ACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAG 1852251
| ||| |||| |||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 86689 ATTGGACGTCTACGTCGAGGTACTGCTCGTCGAGAGCCTGCATGAGCGGGTAGAG 86743
>seq400
Length=252672
Score = 107 bits (118), Expect = 2e-17
Identities = 107/139 (77%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104
|||||||||| |||||||| |||||||||||| | ||| || | || || || |
Sbjct 141648 AGGACAGCATAGGCGGCACAGTGACGTGCGTGATCAGAAACTGTCCAACCGGTCTTGGGG 141707
Query 19105 AGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164
|||| ||||| |||||| |||||||| || || ||||||||||| || ||||| || |
Sbjct 141708 AGCCATGCTTCGACAAGCTCGAGGCCAAACTGGCACACGCCATGCTTTCCATCCCAGCAA 141767
Query 19165 CCAAGGGATTCGAGATTGG 19183
| ||||| || || |||||
Sbjct 141768 CAAAGGGCTTTGAAATTGG 141786
>seq90
Length=398350
Score = 86.0 bits (94), Expect = 8e-11
Identities = 157/224 (70%), Gaps = 7/224 (3%)
Strand=Plus/Minus
Query 733092 GGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTGGGCAGCGTGCGCTCCACC 733151
||||||||| | || ||||| |||||||||||||||||| ||| | | || |||| |
Sbjct 264007 GGCGACAAATTCTCCTCGCGTCACGGCCAAAAGGGCACCACCGGCCTCAT-CG-TCCAGC 263950
Query 733152 --GAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGC 733209
|| |||||||||| || || | ||| || ||||||||| | || ||||| |
Sbjct 263949 AAGAAGACATGCCCT--TCAACG-ACCAAGGCATCAACCCCGACATCATCATGAACCCCC 263893
Query 733210 ACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAGGCCCTCCTGGGCAAGGTGG 733269
||| | |||| || ||||||||| | ||||| ||| | || |||| ||||| | |
Sbjct 263892 ACGGCTTCCCCTCACGCATGACCGTCGGCAAAATGATGGAACTCCTCTCCGGCAAAGCCG 263833
Query 733270 CCTGCCGCGAGGGCTACATCGGCGACGGCACGCCCTTTGGCGGC 733313
| || | | ||| | ||| ||||||| | || ||||||
Sbjct 263832 GCGTCCTCAACGGCACCCTCGAATACGGCACCGCGTTCGGCGGC 263789
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107100547534307
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |