Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq465 178 1e-39
seq113 140 3e-28
>seq465
Length=132516
Score = 178 bits (196), Expect = 1e-39
Identities = 490/738 (66%), Gaps = 26/738 (4%)
Strand=Plus/Plus
Query 139292 GTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAA 139351
|||| ||||||||||| |||||| || ||||| || |||||| |||| | ||
Sbjct 113238 GTTC-TCGCGCTCGTAACGGGTGTAGAGCTCCTCGAACTCATCGCCGTAGACGTCGGCAA 113296
Query 139352 GATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCA 139411
|| | | |||| || || |||||||| | ||| |||||||| | | || ||| |||
Sbjct 113297 GACCAGGGCACTCGTTGGGGCACATGAGTGTCCACTCGCCGTTCTCTTGCACTCGCTTCA 113356
Query 139412 TGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTA--TCTTCCGA 139469
|||| ||||| |||||||| | ||| | | | || || || || || ||||||
Sbjct 113357 TGAAGAGATCGGGAATCCAGAGGGCGTAGAAGAGGTCACGAGC--TCGTACCTCTTCCTT 113414
Query 139470 ACCCATGTTACGTTTC--ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGA 139527
||| ||| || | | || |||||| | || || || ||||||||||| || ||
Sbjct 113415 ACCGTGGTT--CTTGCGTAGGTCAAGGAAGCCGAATACATCCGCGTGCCATGGCTCGAGG 113472
Query 139528 TAGATGGCCATTGCGCCTTTCCG---TTTGCCACCTTGATCGACGTGTCGTACAGCATTA 139584
|||||||| | || || || |||||||| |||||||||| || | | ||
Sbjct 113473 TAGATGGCGAAAGCACCAGGGCGCTTGTTGCCACCCTGATCGACGTAGCGAGCGGTGTTG 113532
Query 139585 TTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG--G 139642
||| | || || | |||||| ||||| | | |||||||||||||| || ||| |
Sbjct 113533 TTGTAGACACGGAGCATCGGGATGAGACCATTGGATGTTCCGTTGGTGCCACCAATGTAG 113592
Query 139643 GA-CTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGAT 139701
|| | | || || |||| | || ||||||| || || ||||| | |||||
Sbjct 113593 GAGCCGGTG---GCACGGATGCGGTGCACATTGAGTCCAATGCCGCCAGCGGTCTTGGAG 113649
Query 139702 ATTAAAACGCAATCGCGT--AATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCG 139759
|| |||||| || | | ||| ||||| ||||| |||||||| |||| |||
Sbjct 113650 AT--CAACGCACACGTCTTCAGTGTGTCGTAGATACCGTCGATGCTGTCCTCCTTCATGT 113707
Query 139760 TGACCAGAAAGCATGACGAAAGTTGCGGTAGTT--TCGTGCCGGCTGCAAACAGAGTAGG 139817
|| || ||||| || || | || || ||| ||| || || ||||| |||||
Sbjct 113708 CGATGAGGAAGCAGGATGACATCTGAGG--GTTGGGCGTTCCCGCGTTGAACAGCGTAGG 113765
Query 139818 ACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAAT 139877
|| || ||||| | || |||||| | ||||| || || ||||| || ||||
Sbjct 113766 CGAGGCATGTGTGAAGTACTTTTGCGACATGTAGTCGTAGGTCTCAATGGCCTTCTCAAT 113825
Query 139878 ATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCAC 139937
|| || ||||| || || | ||| ||||| ||||| || || || || || ||
Sbjct 113826 GTCTTCGCCATGGATGCCAACGGCGACACGCATGAGCATGTGCTGTGGGCGCTCTGCAAC 113885
Query 139938 CGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATA 139997
| ||| | ||| || || | |||||| |||||| |||||||| || ||
Sbjct 113886 CTTGCCGTTGATGCGGAGGAGGTATGAGCGCTCTAGCGTCTTGAAGCCAAAGAACTGGTA 113945
Query 139998 GTTGAAATCGAGCGCATA 140015
|||||| ||| | ||||
Sbjct 113946 GTTGAAGTCGCGGTCATA 113963
Score = 86.0 bits (94), Expect = 6e-12
Identities = 127/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 138501 GTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGG 138560
||| | |||||| || ||||| |||| || ||||| ||| ||||| |||| | ||
Sbjct 112455 GTTGACGACCTGGAACTCACCAGCCAGCACACGACGTGAGTAGATGTTCGAGGTGTATGG 112514
Query 138561 CTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCAC 138620
||| || | ||||||||||| |||||||| | || | || || |||||| ||| ||
Sbjct 112515 CTCGAAGCACTCGTTGTTTCCAAGAATCTGCGAAGTCGAGGCAGTAGGCATGGGCGCAAC 112574
Query 138621 CAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCA 138680
|| ||||| || || | ||| || | ||| ||||| | ||| | |||||||||
Sbjct 112575 CAGGAGAGAGTTGCGCACACCATGCTGAGCGATCTTGTCCTTCAACGAAGCCCAGTCCCA 112634
>seq113
Length=382967
Score = 140 bits (154), Expect = 3e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || ||||| ||||| || || || ||||| |||||||| | ||
Sbjct 361967 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACGCTTGAAGTAGAGTCATCC 361908
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | || | || || |||||||| ||||| || || || ||||| || ||
Sbjct 361907 GACACAATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 361848
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || |||||||||||||| || ||||| ||||| | | |||| || || |||
Sbjct 361847 CAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTGTCGGACTACAAC 361788
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||||| || || ||||| | ||| |||| ||||||||||
Sbjct 361787 ATCCAGAAGGAGTCCACTCTACATCTCGTGCTGCGCCTGCGCGGAGG 361741
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || ||||| || || || || || ||||| |||||||| | ||
Sbjct 361739 ATGCAGATCTTCGTCAAGACGCTCACTGGAAAGACCATCACGCTAGAAGTAGAGTCATCC 361680
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || ||| |||||||| || || || || || ||||| || ||
Sbjct 361679 GATACCATTGACAACGTCAAATCGAAGATCCAGGATAAGGAGGGTATCCCTCCGGACCAG 361620
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | |||||||| || || |||||||||||| | | | || || || |||
Sbjct 361619 CAGCGTCTCATCTTTGCTGGAAAGCAGCTGGAGGATGGCCGCACTCTCTCCGACTACAAC 361560
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||| ||||| ||||| || ||||||||| | || |||| |||||
Sbjct 361559 ATTCAGAAGGAGTCGACTCTGCACTTGGTGCTCCGCCTGCGTGGAGG 361513
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449894951227880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |