Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq465 178 1e-39 seq113 140 3e-28 >seq465 Length=132516 Score = 178 bits (196), Expect = 1e-39 Identities = 490/738 (66%), Gaps = 26/738 (4%) Strand=Plus/Plus Query 139292 GTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAA 139351 |||| ||||||||||| |||||| || ||||| || |||||| |||| | || Sbjct 113238 GTTC-TCGCGCTCGTAACGGGTGTAGAGCTCCTCGAACTCATCGCCGTAGACGTCGGCAA 113296 Query 139352 GATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCA 139411 || | | |||| || || |||||||| | ||| |||||||| | | || ||| ||| Sbjct 113297 GACCAGGGCACTCGTTGGGGCACATGAGTGTCCACTCGCCGTTCTCTTGCACTCGCTTCA 113356 Query 139412 TGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTA--TCTTCCGA 139469 |||| ||||| |||||||| | ||| | | | || || || || || |||||| Sbjct 113357 TGAAGAGATCGGGAATCCAGAGGGCGTAGAAGAGGTCACGAGC--TCGTACCTCTTCCTT 113414 Query 139470 ACCCATGTTACGTTTC--ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGA 139527 ||| ||| || | | || |||||| | || || || ||||||||||| || || Sbjct 113415 ACCGTGGTT--CTTGCGTAGGTCAAGGAAGCCGAATACATCCGCGTGCCATGGCTCGAGG 113472 Query 139528 TAGATGGCCATTGCGCCTTTCCG---TTTGCCACCTTGATCGACGTGTCGTACAGCATTA 139584 |||||||| | || || || |||||||| |||||||||| || | | || Sbjct 113473 TAGATGGCGAAAGCACCAGGGCGCTTGTTGCCACCCTGATCGACGTAGCGAGCGGTGTTG 113532 Query 139585 TTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG--G 139642 ||| | || || | |||||| ||||| | | |||||||||||||| || ||| | Sbjct 113533 TTGTAGACACGGAGCATCGGGATGAGACCATTGGATGTTCCGTTGGTGCCACCAATGTAG 113592 Query 139643 GA-CTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGAT 139701 || | | || || |||| | || ||||||| || || ||||| | ||||| Sbjct 113593 GAGCCGGTG---GCACGGATGCGGTGCACATTGAGTCCAATGCCGCCAGCGGTCTTGGAG 113649 Query 139702 ATTAAAACGCAATCGCGT--AATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCG 139759 || |||||| || | | ||| ||||| ||||| |||||||| |||| ||| Sbjct 113650 AT--CAACGCACACGTCTTCAGTGTGTCGTAGATACCGTCGATGCTGTCCTCCTTCATGT 113707 Query 139760 TGACCAGAAAGCATGACGAAAGTTGCGGTAGTT--TCGTGCCGGCTGCAAACAGAGTAGG 139817 || || ||||| || || | || || ||| ||| || || ||||| ||||| Sbjct 113708 CGATGAGGAAGCAGGATGACATCTGAGG--GTTGGGCGTTCCCGCGTTGAACAGCGTAGG 113765 Query 139818 ACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAAT 139877 || || ||||| | || |||||| | ||||| || || ||||| || |||| Sbjct 113766 CGAGGCATGTGTGAAGTACTTTTGCGACATGTAGTCGTAGGTCTCAATGGCCTTCTCAAT 113825 Query 139878 ATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCAC 139937 || || ||||| || || | ||| ||||| ||||| || || || || || || Sbjct 113826 GTCTTCGCCATGGATGCCAACGGCGACACGCATGAGCATGTGCTGTGGGCGCTCTGCAAC 113885 Query 139938 CGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATA 139997 | ||| | ||| || || | |||||| |||||| |||||||| || || Sbjct 113886 CTTGCCGTTGATGCGGAGGAGGTATGAGCGCTCTAGCGTCTTGAAGCCAAAGAACTGGTA 113945 Query 139998 GTTGAAATCGAGCGCATA 140015 |||||| ||| | |||| Sbjct 113946 GTTGAAGTCGCGGTCATA 113963 Score = 86.0 bits (94), Expect = 6e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 138501 GTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGG 138560 ||| | |||||| || ||||| |||| || ||||| ||| ||||| |||| | || Sbjct 112455 GTTGACGACCTGGAACTCACCAGCCAGCACACGACGTGAGTAGATGTTCGAGGTGTATGG 112514 Query 138561 CTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCAC 138620 ||| || | ||||||||||| |||||||| | || | || || |||||| ||| || Sbjct 112515 CTCGAAGCACTCGTTGTTTCCAAGAATCTGCGAAGTCGAGGCAGTAGGCATGGGCGCAAC 112574 Query 138621 CAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCA 138680 || ||||| || || | ||| || | ||| ||||| | ||| | ||||||||| Sbjct 112575 CAGGAGAGAGTTGCGCACACCATGCTGAGCGATCTTGTCCTTCAACGAAGCCCAGTCCCA 112634 >seq113 Length=382967 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || ||||| |||||||| | || Sbjct 361967 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACGCTTGAAGTAGAGTCATCC 361908 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || |||||||| ||||| || || || ||||| || || Sbjct 361907 GACACAATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 361848 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||||||| || ||||| ||||| | | |||| || || ||| Sbjct 361847 CAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTGTCGGACTACAAC 361788 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || ||||| | ||| |||| |||||||||| Sbjct 361787 ATCCAGAAGGAGTCCACTCTACATCTCGTGCTGCGCCTGCGCGGAGG 361741 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || ||||| |||||||| | || Sbjct 361739 ATGCAGATCTTCGTCAAGACGCTCACTGGAAAGACCATCACGCTAGAAGTAGAGTCATCC 361680 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||||| || || || || || ||||| || || Sbjct 361679 GATACCATTGACAACGTCAAATCGAAGATCCAGGATAAGGAGGGTATCCCTCCGGACCAG 361620 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || |||||||||||| | | | || || || ||| Sbjct 361619 CAGCGTCTCATCTTTGCTGGAAAGCAGCTGGAGGATGGCCGCACTCTCTCCGACTACAAC 361560 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| ||||| || ||||||||| | || |||| ||||| Sbjct 361559 ATTCAGAAGGAGTCGACTCTGCACTTGGTGCTCCGCCTGCGTGGAGG 361513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449894951227880