Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq15 154 2e-31
seq6 154 2e-31
seq423 145 1e-28
seq465 140 5e-27
>seq15
Length=106889
Score = 154 bits (170), Expect = 2e-31
Identities = 198/270 (73%), Gaps = 5/270 (2%)
Strand=Plus/Plus
Query 2411386 TCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGCACC 2411445
|| || || ||| ||| ||| |||||||||||||||| ||| | || || || |||
Sbjct 86538 TCGATTTTCGAGTCGGGGTCGGAGGCGCTCATCTTGCCGCCCTGG---AGACCGGGGACC 86594
Query 2411446 AGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCA 2411505
| ||||| | ||||||| ||| | |||||| ||| || || || ||
Sbjct 86595 ATGGGGTTCATCAGGTGGGCGCGTTCCTTGTAGCCGAGCTTGGGGAGCGCTTCTTTGGCG 86654
Query 2411506 AAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 2411565
| |||||||||||||||||||||| ||||| || ||| |||| |||||||||| ||||
Sbjct 86655 AGGGCAAAGATCTTGCGCTGGTCGACACCGCCGAATTGGACGTCTACGTCGAGGTACTGC 86714
Query 2411566 TCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTT-GCGGTCCAT 2411624
|||||||| ||||||||||||||||||| ||| || || |||| || | || |
Sbjct 86715 TCGTCGAGAGCCTGCATGAGCGGGTAGAGGAGACCACTTAGTGGCGCATTCTCTGT-CTG 86773
Query 2411625 CTTGACCACCTGGGCGGCGGCCTTTTGCGC 2411654
|||||| |||| ||| | ||||||| |||
Sbjct 86774 CTTGACGACCTCGGCACCTGCCTTTTTCGC 86803
>seq6
Length=114070
Score = 154 bits (170), Expect = 2e-31
Identities = 184/250 (74%), Gaps = 0/250 (0%)
Strand=Plus/Minus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || ||||| |||||| |||||| ||||||||||||||| |||
Sbjct 15685 TGACACCAGCCTTCTGGTAATCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCGCGA 15626
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
||||||| |||||| | ||| ||||||| | |||| ||| | || |
Sbjct 15625 GCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGACCTTGGTGTTGCCAA 15566
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
| | | ||||||||||| |||||||| || ||||||||||||||||||| || ||||
Sbjct 15565 GGGCCAACAGCAGGCGGTCAGCGACGAACTCGATGTACTGGCACATGAGGGTGGAATTCA 15506
Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130
|||||| || || ||| || | ||| ||| ||||| | ||| ||||| || ||||
Sbjct 15505 TGCCGAGCAGAGCGCAGGGGAGAGCTTCGGTGAGGAACTCCTGCTCAATCTCAACAGCCT 15446
Query 794131 CGATGATGAT 794140
|| |||||||
Sbjct 15445 CGGTGATGAT 15436
Score = 109 bits (120), Expect = 9e-18
Identities = 151/210 (72%), Gaps = 11/210 (5%)
Strand=Plus/Minus
Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209
||||| |||| ||| ||||| | |||||| || | |||||||| ||||||||
Sbjct 14985 GCCTCTGGTATTTGAACCTCGCTGGAGAAGCGCTCGACGAGGTTCTCGTTGACGATGCCA 14926
Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGA-- 796267
||| ||||||||| |||||||| ||||| ||| ||| ||||||||||||| |||
Sbjct 14925 TCGGAGGCGGCGAAGAAGGCGAGAACGTGGGAGATGAAGAAACGCTCGTCGTCGTTGAGG 14866
Query 796268 -GCGAGACCCAGTGGACCGTG----TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAA 796322
|| | ||||| |||| || | || || | ||||||||||||||| ||
Sbjct 14865 CGCTTGTTCCAGT----CGTGGAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAA 14810
Query 796323 GGAGGCCTCGGCCTTTTTGTACATCTCCCA 796352
|| || |||||||| |||||||| | |||
Sbjct 14809 AGAAGCTTCGGCCTTCTTGTACATTTGCCA 14780
Score = 104 bits (114), Expect = 4e-16
Identities = 139/191 (73%), Gaps = 3/191 (2%)
Strand=Plus/Minus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|| ||||| || ||| | |||||| ||| || || ||||| || |||||||||
Sbjct 15362 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCATCAGACCGCGCTTC 15303
Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460
|||||||| ||||||| |||| ||| ||| ||||| ||||| ||||| ||||||
Sbjct 15302 TTGAGCCAGAAGATGGACGCGAAAGAGCCGCTGAAGAAGATACCCTCAACGGCAGCAAAG 15243
Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520
||||||| || | |||||||||| || | | | || ||||||||| | |||||
Sbjct 15242 GCGACGAGACGGTTGGCAAAAGTG--GAGTTCTTGTCTG-AGATCCACTTGAGAGCCCAG 15186
Query 794521 TCTGCCTTTTT 794531
|| ||||| ||
Sbjct 15185 TCGGCCTTCTT 15175
Score = 87.8 bits (96), Expect = 3e-11
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 794591 TGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCT 794650
||| ||| |||||||||||||||||||| ||||||||||||||||| || || ||||
Sbjct 15065 TGATGTATGTGTCGATGAGGAGCGAGTATGTCTCTGAGTGGATGTTCTCCATCATAATCT 15006
Query 794651 GGAAGCCATAAAAGCA 794666
||||||| || |||||
Sbjct 15005 GGAAGCCGTAGAAGCA 14990
>seq423
Length=224451
Score = 145 bits (160), Expect = 1e-28
Identities = 122/150 (81%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671
|||||||||| | ||||| ||| | ||||| || |||||||||||||||||||||
Sbjct 100536 AGGTCGACCAGGAGATGCTCTTCGAGATCATCCTTGCTGCCAACTACCTCGACATCAAGG 100595
Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731
| || ||||| | || ||||||||||| |||||| | |||||||||||||| ||||| |
Sbjct 100596 CGCTTCTCGACGTCGGCTGCAAGACCGTCGCCAACATGATCAAGGGCAAGTCCCCCGACG 100655
Query 2035732 ACATCCGCAAGACCTTTAACATCAAGTACG 2035761
| ||||||||||| || |||||| || |||
Sbjct 100656 AGATCCGCAAGACGTTCAACATCCAGAACG 100685
>seq465
Length=132516
Score = 140 bits (154), Expect = 5e-27
Identities = 211/300 (70%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||| ||||| ||||| || |||| ||| |||| |||||||| || | || || |||||
Sbjct 113508 CTGATCGACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATCGGGATGAGACCATTGGA 113567
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
||||||||||| | | ||||| ||| | ||| || | |||| | | ||
Sbjct 113568 TGTTCCGTTGGTGCCACCAATGTAGGAGCCGGTGGCACGGATGCGGTGCACATTGAGTCC 113627
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
|||||||| || | ||||||||| | ||| ||| | ||||| || |||||||| || ||
Sbjct 113628 AATGCCGCCAGCGGTCTTGGAGATCAACGCACACGTCTTCAGTGTGTCGTAGATACCGTC 113687
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
||| ||| |||||||||| | || ||||| || || | || ||| | ||| ||
Sbjct 113688 GATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGAGGGTTGGGCGTTCC 113747
Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839
|| ||||| ||||| |||| || ||| | ||| ||| |||||| ||||||||
Sbjct 113748 CGCGTTGAACAGCGTAGGCGAGGCATGTGTGAAGTACTTTTGCGACATGTAGTCGTAGGT 113807
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916196297581769
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |