Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq15 154 2e-31 seq6 154 2e-31 seq423 145 1e-28 seq465 140 5e-27 >seq15 Length=106889 Score = 154 bits (170), Expect = 2e-31 Identities = 198/270 (73%), Gaps = 5/270 (2%) Strand=Plus/Plus Query 2411386 TCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGCACC 2411445 || || || ||| ||| ||| |||||||||||||||| ||| | || || || ||| Sbjct 86538 TCGATTTTCGAGTCGGGGTCGGAGGCGCTCATCTTGCCGCCCTGG---AGACCGGGGACC 86594 Query 2411446 AGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCA 2411505 | ||||| | ||||||| ||| | |||||| ||| || || || || Sbjct 86595 ATGGGGTTCATCAGGTGGGCGCGTTCCTTGTAGCCGAGCTTGGGGAGCGCTTCTTTGGCG 86654 Query 2411506 AAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 2411565 | |||||||||||||||||||||| ||||| || ||| |||| |||||||||| |||| Sbjct 86655 AGGGCAAAGATCTTGCGCTGGTCGACACCGCCGAATTGGACGTCTACGTCGAGGTACTGC 86714 Query 2411566 TCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTT-GCGGTCCAT 2411624 |||||||| ||||||||||||||||||| ||| || || |||| || | || | Sbjct 86715 TCGTCGAGAGCCTGCATGAGCGGGTAGAGGAGACCACTTAGTGGCGCATTCTCTGT-CTG 86773 Query 2411625 CTTGACCACCTGGGCGGCGGCCTTTTGCGC 2411654 |||||| |||| ||| | ||||||| ||| Sbjct 86774 CTTGACGACCTCGGCACCTGCCTTTTTCGC 86803 >seq6 Length=114070 Score = 154 bits (170), Expect = 2e-31 Identities = 184/250 (74%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||||| |||||| |||||| ||||||||||||||| ||| Sbjct 15685 TGACACCAGCCTTCTGGTAATCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCGCGA 15626 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 ||||||| |||||| | ||| ||||||| | |||| ||| | || | Sbjct 15625 GCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGACCTTGGTGTTGCCAA 15566 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | ||||||||||| |||||||| || ||||||||||||||||||| || |||| Sbjct 15565 GGGCCAACAGCAGGCGGTCAGCGACGAACTCGATGTACTGGCACATGAGGGTGGAATTCA 15506 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||||| || || ||| || | ||| ||| ||||| | ||| ||||| || |||| Sbjct 15505 TGCCGAGCAGAGCGCAGGGGAGAGCTTCGGTGAGGAACTCCTGCTCAATCTCAACAGCCT 15446 Query 794131 CGATGATGAT 794140 || ||||||| Sbjct 15445 CGGTGATGAT 15436 Score = 109 bits (120), Expect = 9e-18 Identities = 151/210 (72%), Gaps = 11/210 (5%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| |||| ||| ||||| | |||||| || | |||||||| |||||||| Sbjct 14985 GCCTCTGGTATTTGAACCTCGCTGGAGAAGCGCTCGACGAGGTTCTCGTTGACGATGCCA 14926 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGA-- 796267 ||| ||||||||| |||||||| ||||| ||| ||| ||||||||||||| ||| Sbjct 14925 TCGGAGGCGGCGAAGAAGGCGAGAACGTGGGAGATGAAGAAACGCTCGTCGTCGTTGAGG 14866 Query 796268 -GCGAGACCCAGTGGACCGTG----TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAA 796322 || | ||||| |||| || | || || | ||||||||||||||| || Sbjct 14865 CGCTTGTTCCAGT----CGTGGAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAA 14810 Query 796323 GGAGGCCTCGGCCTTTTTGTACATCTCCCA 796352 || || |||||||| |||||||| | ||| Sbjct 14809 AGAAGCTTCGGCCTTCTTGTACATTTGCCA 14780 Score = 104 bits (114), Expect = 4e-16 Identities = 139/191 (73%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| || ||| | |||||| ||| || || ||||| || ||||||||| Sbjct 15362 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCATCAGACCGCGCTTC 15303 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||||| |||| ||| ||| ||||| ||||| ||||| |||||| Sbjct 15302 TTGAGCCAGAAGATGGACGCGAAAGAGCCGCTGAAGAAGATACCCTCAACGGCAGCAAAG 15243 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 ||||||| || | |||||||||| || | | | || ||||||||| | ||||| Sbjct 15242 GCGACGAGACGGTTGGCAAAAGTG--GAGTTCTTGTCTG-AGATCCACTTGAGAGCCCAG 15186 Query 794521 TCTGCCTTTTT 794531 || ||||| || Sbjct 15185 TCGGCCTTCTT 15175 Score = 87.8 bits (96), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 794591 TGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCT 794650 ||| ||| |||||||||||||||||||| ||||||||||||||||| || || |||| Sbjct 15065 TGATGTATGTGTCGATGAGGAGCGAGTATGTCTCTGAGTGGATGTTCTCCATCATAATCT 15006 Query 794651 GGAAGCCATAAAAGCA 794666 ||||||| || ||||| Sbjct 15005 GGAAGCCGTAGAAGCA 14990 >seq423 Length=224451 Score = 145 bits (160), Expect = 1e-28 Identities = 122/150 (81%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671 |||||||||| | ||||| ||| | ||||| || ||||||||||||||||||||| Sbjct 100536 AGGTCGACCAGGAGATGCTCTTCGAGATCATCCTTGCTGCCAACTACCTCGACATCAAGG 100595 Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731 | || ||||| | || ||||||||||| |||||| | |||||||||||||| ||||| | Sbjct 100596 CGCTTCTCGACGTCGGCTGCAAGACCGTCGCCAACATGATCAAGGGCAAGTCCCCCGACG 100655 Query 2035732 ACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | ||||||||||| || |||||| || ||| Sbjct 100656 AGATCCGCAAGACGTTCAACATCCAGAACG 100685 >seq465 Length=132516 Score = 140 bits (154), Expect = 5e-27 Identities = 211/300 (70%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| ||||| ||||| || |||| ||| |||| |||||||| || | || || ||||| Sbjct 113508 CTGATCGACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATCGGGATGAGACCATTGGA 113567 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||||||||| | | ||||| ||| | ||| || | |||| | | || Sbjct 113568 TGTTCCGTTGGTGCCACCAATGTAGGAGCCGGTGGCACGGATGCGGTGCACATTGAGTCC 113627 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 |||||||| || | ||||||||| | ||| ||| | ||||| || |||||||| || || Sbjct 113628 AATGCCGCCAGCGGTCTTGGAGATCAACGCACACGTCTTCAGTGTGTCGTAGATACCGTC 113687 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| |||||||||| | || ||||| || || | || ||| | ||| || Sbjct 113688 GATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGAGGGTTGGGCGTTCC 113747 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 || ||||| ||||| |||| || ||| | ||| ||| |||||| |||||||| Sbjct 113748 CGCGTTGAACAGCGTAGGCGAGGCATGTGTGAAGTACTTTTGCGACATGTAGTCGTAGGT 113807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916196297581769