Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq465 347 1e-90 seq6 174 2e-38 seq113 125 7e-24 seq267 87.8 2e-12 >seq465 Length=132516 Score = 347 bits (384), Expect = 1e-90 Identities = 1015/1545 (66%), Gaps = 49/1545 (3%) Strand=Plus/Plus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 || || ||||| ||||| || || ||||| || || || | ||| || | || Sbjct 112456 TTGACGACCTGGAACTCACCAGCCAGCACACGACGTGAGTAGATGTTCGAGGTGTATGGC 112515 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 || || |||||||||| || | |||||||| |||| || || |||||| ||| ||| Sbjct 112516 TCGAAGCACTCGTTGTTTCCAAGAATCTGCGAAGTCGAGGCAGTAGGCATGGGCGCAACC 112575 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439 || || |||||||||| ||| | | || ||| ||||| | ||||||||||| Sbjct 112576 AGGAGAGAGTTGCGCACACCATGCTGAGCGATCTTGTCCTTCAACGAAGCCCAGTCCCAA 112635 Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGC--GGCTAGCGGGGC 148497 || || || |||||| ||| | |||||||| || || | | || | || | Sbjct 112636 AGGTCAGAAGGAGTCACGCCCCAGAGATCGTACTGAAGC-TGACCCTTGGACACAGGCGA 112694 Query 148498 TGCCCTCGTACG-AGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGC 148556 |||||||| | ||| || || || || || || | |||||| || | ||| Sbjct 112695 A-CCCTCGTATGTAGCA-TATGGACCAAGCTCCTTGGCGATATCGCAGGACGACGTGAGA 112752 Query 148557 GCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCG-ACTCGCTTTC 148615 || ||| |||||| |||||| || || |||||||| | || | ||| | | Sbjct 112753 GCCGCGTGGTAAATTGTCTCGAAGATCTGGGTGTTGAGCTTCTTGGCTTCAGTCGACT-C 112811 Query 148616 GTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGG 148675 | |||| ||| || | || || || ||||| ||||| || || | || ||||| Sbjct 112812 AAAAGGCAGACGAAGGGCGAGGAAAGCATCAGCAAGACCCTGAACACCAAGACCGATGGG 112871 Query 148676 CCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTGGTTGCGGTCGATGAT 148735 || || | ||| | |||| || ||| | || ||||||||| |||||||| Sbjct 112872 CCTATGGCGGAAATTGCTGCGGCGTGCCTCCTCCACAGGGTAGTGGTTGACCTCGATGAT 112931 Query 148736 CTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGC------AATTCAAAATC 148789 ||||| || || || || ||| | || | | | ||| || || || || Sbjct 112932 CTTGTTGAGGTTACGTGTGACGACCATGGTCACCTCGTGGAGCTTGTGGAAGTCGAACTC 112991 Query 148790 GTA---CTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGC 148846 | ||||| || || | | || | | ||||| || || || ||||||||||| Sbjct 112992 GCCACGCTTGTAGTCGACAAAGGATGGA---AGGGCGAGGGAAGCCAGGTTGCACACGGC 113048 Query 148847 CGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTG---CTGCATTTGAT 148903 |||||| || || || |||| || ||||| | ||| || ||| |||| || | Sbjct 113049 GACCTCATCAGGAGCAGTGAACTCGACAATCTCAGTGCAGAGGTTGGAGCTGCGAATGGT 113108 Query 148904 CACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 || | |||||| || ||| ||| |||||||| |||||||||||||||||| |||| Sbjct 113109 ACCG---AGGTTCTTCTGGTTGGACTTCCTGTTGCAAGCGTCCTTGTACAGCATGAACGG 113165 Query 148964 TCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAGGTC--CTGCGCGCGCACT 149021 |||||| || ||||| || | ||| || ||| | ||| || || || Sbjct 113166 GTTGCCAGTCTCAGTCTGCGCCTCGAGAATGG--CGTACCAGAGCTTCTGGGCACGAACA 113223 Query 149022 TGCTGCTCGTAGCGACCCTCCT------GCTCGTATAAAGTATACAGCCGCTCGAACGCC 149075 || |||||||| | ||||||| || || ||| ||||||| | Sbjct 113224 GTCTC------GCGACCCTTGTTCTCGCGCTCGTAACGGGTGTAGAGCTCCTCGAACTCA 113277 Query 149076 TCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCG 149135 ||||||||| ||| | ||||| ||||||| || ||||||||||| | |||| ||||| Sbjct 113278 TCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATGAGTGTCCACTCGCCG 113337 Query 149136 TCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGC 149195 | | | | ||| |||||||| || |||||||| | |||||| ||||| | |||||| || Sbjct 113338 TTCTCTTGCACTCGCTTCATGAAGAGATCGGGAATCCAGAGGGCGTAGAAGAGGTCACGA 113397 Query 149196 GC-CTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGC 149254 || | | | ||||| || ||| ||| |||| || | || ||||| ||||| Sbjct 113398 GCTCGTAC-CTCTTCCTTACCGTGGTTCTTGCGTAGGTCAAGGAAGCCGAATACATCCGC 113456 Query 149255 GTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGAC 149311 |||||| ||||| | ||| | |||| || || |||| ||||| ||||| ||||| Sbjct 113457 GTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGGCGCTTGTTGCCACCCTGATCGAC 113516 Query 149312 GTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTT 149371 || ||| | ||||||| | || || | ||| || | ||| ||| || ||||| Sbjct 113517 GTAGCGAGCGGTGTTGTTGTAGACACGGAGCATCGGGATGAGACCATTGGATGTTCCGTT 113576 Query 149372 AGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC 149431 || | |||| |||| || || | |||||| |||| || |||||||| Sbjct 113577 GGTGCCACCAATGTAGGAGCCGGTGGCACGGATGCGGTGCACATTGAGTCCAATGCCGCC 113636 Query 149432 GCCGTACTTTGAGATGGCCGCGCA-GTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGT 149490 || ||| ||||| ||| || ||| | || || |||||| || |||||||||| Sbjct 113637 AGCGGTCTTGGAGATCAACGCACACGTCTTC-AGTGTGTCGTAGATACCGTCGATGCTGT 113695 Query 149491 CGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGA 149550 | ||||||| | || ||||| || |||| || || |||| || || || Sbjct 113696 CCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGAGGGTTGGGCGTTCCCGCGTTGA 113755 Query 149551 ACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCA 149610 ||| || || ||| ||||| || || || || ||| ||||| | ||| | Sbjct 113756 ACAGCGTAGGCGAGGCATGTGTGAAGTACTTTTGCGACATGTAGTCGTAGGTCTCAATGG 113815 Query 149611 CGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTC 149670 | || ||||| |||||||||||||| | |||||| ||||| ||||| ||||| || | Sbjct 113816 CCTTCTCAATGTCTTCGCCATGGATGCCAACGGCGACACGCATGAGCATGTGCTGTGGGC 113875 Query 149671 GCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAA 149730 |||| || || ||| || ||| | ||| | ||||| |||||| |||||| Sbjct 113876 GCTCTGCAACCTTGCCGTTGATGCGGAGGAGGTATGAGCGCTCTAGCGTCTTGAAGCCAA 113935 Query 149731 AGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTCGA 149775 || ||| ||||| ||||||||| | | ||||||| | || || Sbjct 113936 AGAACTGGTAGTTGAAGTCGCGGTCATATACAATGGCCGAGTTGA 113980 >seq6 Length=114070 Score = 174 bits (192), Expect = 2e-38 Identities = 357/520 (69%), Gaps = 17/520 (3%) Strand=Plus/Minus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| ||||||||||| ||||| || ||||| || |||||| | | ||| ||||| | Sbjct 15672 CTGGTAATCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCGCGAGCGAGATGTTCTC 15613 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || ||||| |||||| | ||||| || || | | ||| | | ||||| Sbjct 15612 CATGAAGTCGAAGGGGTTGGTGGCGTTGTAGACCTTGGTGTTGCCAAGGGCCAACAGCAG 15553 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATG-GACTGCGCGTTCATGCCCAGCAACG 120529 ||||| || || ||||| ||||||| ||||||| | || | |||||||| |||| | Sbjct 15552 GCGGTCAGCGACGAACTCGATGTACTGGCACATGAGGGTG-GAATTCATGCCGAGCAGAG 15494 Query 120530 CCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGG 120589 | || | || |||| ||||||| |||||| || || ||||| ||| |||| Sbjct 15493 CGCAGGGGAGAGCTTCGGTGAGGAACTCCTGCTCAATCTCAACAGCCTCGGTGATGATGG 15434 Query 120590 C---GA--GCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCA 120644 | || |||| | || ||| | ||||| || | | | || |||||| Sbjct 15433 CCTTGACGGCATCCTT--GCTGGGG--CGGGTGTT-GAGAAGAGA---GAAGAGCAGGCA 15382 Query 120645 CGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCC 120704 |||||||| ||||||| ||||||||| || || || ||||||||| || || || || Sbjct 15381 TGCAAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACC 15322 Query 120705 GGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACAC 120764 ||||| | || | |||||| |||| |||| || || ||| ||||| | Sbjct 15321 TGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGACGCGAAAGAGCCGCTGAAGAAGAT 15262 Query 120765 GCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTG-CTGTCGA 120823 ||||| ||| ||||||||||| | || | ||| || || | ||||| ||| || Sbjct 15261 ACCCTCAACGGCAGCAAAGGCGACGAGACGGTTGGCAAAAGTGGAGTTCTTGTCTG-AGA 15203 Query 120824 TCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 ||||||| | ||||| |||||||| ||||| | ||| || Sbjct 15202 TCCACTTGAGAGCCCAGTCGGCCTTCTTGCGGATGCATGG 15163 >seq113 Length=382967 Score = 125 bits (138), Expect = 7e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||||| |||||||| ||||| || ||||| || || |||| |||||| ||||| Sbjct 361764 ATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCAAGCTG 361823 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || | ||||||||||| ||||| ||||| |||||||| |||||| Sbjct 361824 CTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTT 361883 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | || | ||||||| | ||| || || | |||| ||| |||||||| Sbjct 361884 GCTCTTGACGTTGTCGATTGTGTCGGATGACTCTACTTCAAGCGTGATGGTCTTGCCGGT 361943 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || ||||| |||||||| Sbjct 361944 GAGCGTCTTGACGAAGATCTGCAT 361967 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| | ||| | | | ||||| |||||||| || Sbjct 361543 GTCGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGGCCA-TCCTCCAGCTGCTTTCC 361601 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| ||||||||||| |||||||| || ||||| || |||||| || Sbjct 361602 AGCAAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTGGATCTTCGATTT 361661 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| || |||| | ||| || || | |||| ||| || || || || || Sbjct 361662 GACGTTGTCAATGGTATCGGATGACTCTACTTCTAGCGTGATGGTCTTTCCAGTGAGCGT 361721 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 361722 CTTGACGAAGATCTGCAT 361739 >seq267 Length=290730 Score = 87.8 bits (96), Expect = 2e-12 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| || | ||| | | | |||||||||| Sbjct 207193 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCA-TCCTCGAGCT 207251 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 ||||||| ||| | ||||| ||||||||||| || || ||||| |||||||| Sbjct 207252 GCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 207303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483417953860040