Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq6 159 5e-33 seq465 140 5e-27 >seq6 Length=114070 Score = 159 bits (176), Expect = 5e-33 Identities = 213/292 (73%), Gaps = 13/292 (4%) Strand=Plus/Plus Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838 ||| |||||||| || |||||||| || || || ||||||||||||||| | || || Sbjct 14780 TGGCAAATGTAC-AAGAAGGCCGAAGCTTCTTTCTGGACCGCCGAGGAGATTGATCTGTC 14838 Query 1455839 CGCCGA----CACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCA 1455891 | || |||| ||||| || | | |||||||||||| |||||| Sbjct 14839 CAAGGATCTCCACG----ACTGGAACAAGCGCCTCAACGACGACGAGCGTTTCTTCATCT 14894 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||| |||||||| || ||||||| |||||||||||| ||||||||| | || Sbjct 14895 CCCACGTTCTCGCCTTCTT-CGCCGCCTCCGATGGCATCGTCAACGAGAACCTCGTCGAG 14953 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | ||||| ||| | ||||||||||| | || ||||| |||||||| Sbjct 14954 CGCTTCTCCAGCGAGGTTCAAATACCAGAGGCACGATGCTTCTACGGCTTCCAGATTATG 15013 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCA 1456063 || || ||||||||||| || || ||||||||||| |||||||| ||| ||| Sbjct 15014 ATGGAGAACATCCACTCAGAGACATACTCGCTCCTCATCGACACATACATCA 15065 Score = 132 bits (146), Expect = 7e-25 Identities = 188/259 (73%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| |||||| || ||||| ||| | ||||| ||| ||| | || || || Sbjct 15436 ATCATCACCGAGGCTGTTGAGATTGAGCAGGAGTTCCTCACCGAAGCTCTCCCCTGCGCT 15495 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || |||||||||| ||||| ||||||||||||||||| || || ||||| ||||||| Sbjct 15496 CTGCTCGGCATGAATTCCACC-CTCATGTGCCAGTACATCGAGTTC-GTCGCTGACCGCC 15553 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||| ||| || ||| | ||| |||| | ||||||| ||| | ||| Sbjct 15554 TGCTGTTGGCCCTTGGCAACACC-AAGGTCTACAACGCCACCAACCCCTTCGACTTCATG 15612 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 ||| |||||||||| ||||||||||||||| |||||| ||||| ||||| ||| Sbjct 15613 GAGAACATCTCGCTCGCGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGATTACCAG 15672 Query 1456762 AAGGCCGGCGTCACCGCCA 1456780 ||||| || |||| |||| Sbjct 15673 AAGGCTGGTGTCATGGCCA 15691 Score = 107 bits (118), Expect = 3e-17 Identities = 123/159 (77%), Gaps = 11/159 (7%) Strand=Plus/Plus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCG 1456179 || |||||||||||||| | ||||||||| ||||| | ||| || |||||| Sbjct 15175 AAGAAGGCCGACTGGGCTCTCAAGTGGATCTCAGACAAGAA----CTCCACT-TTTGCCA 15229 Query 1456180 AGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CC 1456237 | || ||||||| |||||| || || ||||| ||||| ||| ||| |||| ||| || Sbjct 15230 ACCGTCTCGTCGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGCTCTTTC-GCGTCC 15288 Query 1456238 ATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTT 1456276 ||||| ||||||||||||||||| || ||||| |||||| Sbjct 15289 ATCTTCTGGCTCAAGAAGCGCGGTCTGATGCCAGGTCTT 15327 >seq465 Length=132516 Score = 140 bits (154), Expect = 5e-27 Identities = 262/387 (68%), Gaps = 15/387 (4%) Strand=Plus/Minus Query 259796 GAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTC 259855 ||||| || ||| | |||||||||||||||||| ||||| |||| | ||| | Sbjct 113879 GAGCGCCCACAGCACATGCTCATGCGTGTCGCCGTTGGCATCCATGGC---GAAGACATT 113823 Query 259856 GACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACC 259915 || || || | ||| |||||||| ||||||||| ||| ||||| Sbjct 113822 GAGAAGGCCATTGAG------------ACCTACGACTACATGTCGCAAAAGTACTTCACA 113775 Query 259916 TCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTT 259975 || |||| ||||| || || || || ||||| ||| |||| || || ||||| Sbjct 113774 CATGCCTCGCCTACGCTGTTCAACGCGGGAACGCCCAACCCTCAGATGTCATCCTGCTTC 113715 Query 259976 CTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCG 260035 || | |||||||||| || ||||| || ||||| ||||| || ||| ||| ||| Sbjct 113714 CTCATCGACATGAAGGAGGACAGCATCGACGGTATCTACGACACACTGAAGACGTGTGCG 113655 Query 260036 CTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGC 260095 | ||||||||| | || |||||||| || | | ||| | || ||| | ||| Sbjct 113654 TTGATCTCCAAGACCGCTGGCGGCATTGGACTCAATGTGCACCGCATCCGTGCCACCGGC 113595 Query 260096 GCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTT 260155 ||||| | | ||||||||||| ||||| || || | || ||||| || || | Sbjct 113594 TCCTACATTGGTGGCACCAACGGAACATCCAATGGTCTCATCCCGATGCTCCGTGTCTAC 113535 Query 260156 AACGACACGGCGCGCTACGTCGACCAG 260182 ||| |||| || ||||||||||| ||| Sbjct 113534 AACAACACCGCTCGCTACGTCGATCAG 113508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177765771184302