Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq6 159 5e-33
seq465 140 5e-27
>seq6
Length=114070
Score = 159 bits (176), Expect = 5e-33
Identities = 213/292 (73%), Gaps = 13/292 (4%)
Strand=Plus/Plus
Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838
||| |||||||| || |||||||| || || || ||||||||||||||| | || ||
Sbjct 14780 TGGCAAATGTAC-AAGAAGGCCGAAGCTTCTTTCTGGACCGCCGAGGAGATTGATCTGTC 14838
Query 1455839 CGCCGA----CACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCA 1455891
| || |||| ||||| || | | |||||||||||| ||||||
Sbjct 14839 CAAGGATCTCCACG----ACTGGAACAAGCGCCTCAACGACGACGAGCGTTTCTTCATCT 14894
Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951
||||| |||||||| || ||||||| |||||||||||| ||||||||| | ||
Sbjct 14895 CCCACGTTCTCGCCTTCTT-CGCCGCCTCCGATGGCATCGTCAACGAGAACCTCGTCGAG 14953
Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011
||||| | ||||| ||| | ||||||||||| | || ||||| ||||||||
Sbjct 14954 CGCTTCTCCAGCGAGGTTCAAATACCAGAGGCACGATGCTTCTACGGCTTCCAGATTATG 15013
Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCA 1456063
|| || ||||||||||| || || ||||||||||| |||||||| ||| |||
Sbjct 15014 ATGGAGAACATCCACTCAGAGACATACTCGCTCCTCATCGACACATACATCA 15065
Score = 132 bits (146), Expect = 7e-25
Identities = 188/259 (73%), Gaps = 4/259 (2%)
Strand=Plus/Plus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
|||||| |||||| || ||||| ||| | ||||| ||| ||| | || || ||
Sbjct 15436 ATCATCACCGAGGCTGTTGAGATTGAGCAGGAGTTCCTCACCGAAGCTCTCCCCTGCGCT 15495
Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642
|| |||||||||| ||||| ||||||||||||||||| || || ||||| |||||||
Sbjct 15496 CTGCTCGGCATGAATTCCACC-CTCATGTGCCAGTACATCGAGTTC-GTCGCTGACCGCC 15553
Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702
|||| ||| || ||| | ||| |||| | ||||||| ||| | |||
Sbjct 15554 TGCTGTTGGCCCTTGGCAACACC-AAGGTCTACAACGCCACCAACCCCTTCGACTTCATG 15612
Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761
||| |||||||||| ||||||||||||||| |||||| ||||| ||||| |||
Sbjct 15613 GAGAACATCTCGCTCGCGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGATTACCAG 15672
Query 1456762 AAGGCCGGCGTCACCGCCA 1456780
||||| || |||| ||||
Sbjct 15673 AAGGCTGGTGTCATGGCCA 15691
Score = 107 bits (118), Expect = 3e-17
Identities = 123/159 (77%), Gaps = 11/159 (7%)
Strand=Plus/Plus
Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCG 1456179
|| |||||||||||||| | ||||||||| ||||| | ||| || ||||||
Sbjct 15175 AAGAAGGCCGACTGGGCTCTCAAGTGGATCTCAGACAAGAA----CTCCACT-TTTGCCA 15229
Query 1456180 AGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CC 1456237
| || ||||||| |||||| || || ||||| ||||| ||| ||| |||| ||| ||
Sbjct 15230 ACCGTCTCGTCGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGCTCTTTC-GCGTCC 15288
Query 1456238 ATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTT 1456276
||||| ||||||||||||||||| || ||||| ||||||
Sbjct 15289 ATCTTCTGGCTCAAGAAGCGCGGTCTGATGCCAGGTCTT 15327
>seq465
Length=132516
Score = 140 bits (154), Expect = 5e-27
Identities = 262/387 (68%), Gaps = 15/387 (4%)
Strand=Plus/Minus
Query 259796 GAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTC 259855
||||| || ||| | |||||||||||||||||| ||||| |||| | ||| |
Sbjct 113879 GAGCGCCCACAGCACATGCTCATGCGTGTCGCCGTTGGCATCCATGGC---GAAGACATT 113823
Query 259856 GACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACC 259915
|| || || | ||| |||||||| ||||||||| ||| |||||
Sbjct 113822 GAGAAGGCCATTGAG------------ACCTACGACTACATGTCGCAAAAGTACTTCACA 113775
Query 259916 TCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTT 259975
|| |||| ||||| || || || || ||||| ||| |||| || || |||||
Sbjct 113774 CATGCCTCGCCTACGCTGTTCAACGCGGGAACGCCCAACCCTCAGATGTCATCCTGCTTC 113715
Query 259976 CTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCG 260035
|| | |||||||||| || ||||| || ||||| ||||| || ||| ||| |||
Sbjct 113714 CTCATCGACATGAAGGAGGACAGCATCGACGGTATCTACGACACACTGAAGACGTGTGCG 113655
Query 260036 CTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGC 260095
| ||||||||| | || |||||||| || | | ||| | || ||| | |||
Sbjct 113654 TTGATCTCCAAGACCGCTGGCGGCATTGGACTCAATGTGCACCGCATCCGTGCCACCGGC 113595
Query 260096 GCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTT 260155
||||| | | ||||||||||| ||||| || || | || ||||| || || |
Sbjct 113594 TCCTACATTGGTGGCACCAACGGAACATCCAATGGTCTCATCCCGATGCTCCGTGTCTAC 113535
Query 260156 AACGACACGGCGCGCTACGTCGACCAG 260182
||| |||| || ||||||||||| |||
Sbjct 113534 AACAACACCGCTCGCTACGTCGATCAG 113508
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177765771184302
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |