Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq113 141 9e-29 seq465 100 3e-16 >seq113 Length=382967 Score = 141 bits (156), Expect = 9e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CG 134543 ||||||| | || |||| |||||| ||||| ||||| ||||| || |||||||||| || Sbjct 361739 TTCCTCCGCGCAGGCGCAGCACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCCG 361798 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 || | ||| | ||| || ||||| ||||| ||||| ||||| |||||||| || || Sbjct 361799 ACAGC-GTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGA 361857 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || ||||| || || || || || || ||||| ||| | ||||||||| || || Sbjct 361858 GGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATTGTGTCGGATGACTCT 361917 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||| || ||||| | || || ||||| || ||||| Sbjct 361918 ACTTCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 361967 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 134483 CTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC 134542 || |||||| | || || | ||| | ||| || || || ||||| |||||||||||||| Sbjct 361509 CTGTCCTCCACGCAGGCGGAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTC 361568 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 | | ||| | || || ||||| || || ||||| || | ||||||||| || || Sbjct 361569 GGAGAGAGTGCGGCCATCCTCCAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGG 361628 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 || || || || || || || || || |||||| ||| | || ||||| || || Sbjct 361629 AGGGATACCCTCCTTATCCTGGATCTTCGATTTGACGTTGTCAATGGTATCGGATGACTC 361688 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || || ||||| || || || | || || ||||| || |||||| Sbjct 361689 TACTTCTAGCGTGATGGTCTTTCCAGTGAGCGTCTTGACGAAGATCTGCATT 361740 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| ||||| || ||||| || |||||||||||| | Sbjct 361969 CCACCGCGGAGACGGAGGACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAA 362028 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||||||||| || || ||||| |||||||| || || || Sbjct 362029 AGGGTGCGGCCGTCCTCAAGCTGTTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGA 362088 Query 134607 ATGCCTTCTTTTTCT 134621 ||||| || || ||| Sbjct 362089 ATGCCCTCCTTGTCT 362103 >seq465 Length=132516 Score = 100 bits (110), Expect = 3e-16 Identities = 531/848 (63%), Gaps = 15/848 (2%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || |||||||| |||| || || || ||||| || |||||||||||||| ||| | Sbjct 113870 CAGCACATGCTCATGCGTGTCGCCGTTGGCATCCATGGCGAAGACATTGAGAAGGCCATT 113811 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || || ||| | ||||| || | || || || || ||||| || |||| | Sbjct 113810 GAGACCTACGACTACATGTCGCAAAAGTACTTCACACATGCCTCGCCTACGCTGTTCAAC 113751 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 ||||| || | ||||| |||| || || || | | |||| || |||||| Sbjct 113750 GCGGGAACGCCCAACCCTCAGATGTCATCCTGCTTCCTCATCGACATGAAGGAGGACAGC 113691 Query 7744 ATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGA 7803 |||||||| || ||| |||| ||| || || || ||||| || ||||| Sbjct 113690 ATCGACGGTATCTACGACACACTGAAGACGTGTGCGTTGATCTCCAAGACCGCTGGCGGC 113631 Query 7804 ATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGA 7863 || || || || || || | | || |||| ||| | ||| | |||||||||| Sbjct 113630 ATTGGACTCAATGTGCACCGCATCCGTGCCACCGGCTCCTACATTGGTGGCACCAACGGA 113571 Query 7864 AAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGAC 7923 | | ||| ||| | || ||| | || || | ||| ||| | | || | || || Sbjct 113570 ACATCCAATGGTCTCATCCCGATGCTCCGTGTCTACAACAACACCGCTCGCTACGTCGAT 113511 Query 7924 CAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGAC 7980 ||||| || |||||| || || |||||||| | ||||| ||||||||||| Sbjct 113510 CAGGGTGGCAACAAGCGCCCTGGTGCTTTCGCCATCTACCTCGAGCCATGGCACGCGGAT 113451 Query 7981 ATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCGAT 8040 | | || | || | || || ||| ||| ||||| ||| || || Sbjct 113450 GTATTCGGCTTCCTTGACCTACGCAAGAACCACGGTAAGGAAGAGGTACGAGCTCGTGAC 113391 Query 8041 CTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAA 8100 || |||| || | ||| | |||||||| || |||| ||| || || ||| | Sbjct 113390 CTCTTCTACGCCCTCTGGATTCCCGATCTCTTCATGAAGCGAGTGCAAGAGAACGGCGAG 113331 Query 8101 TGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTT 8160 ||| | |||||||||||| | |||||| | |||| ||||| | || Sbjct 113330 TGGACACTCATGTGCCCCAACGAGTGCCCTGGTCTTGCCGACGTCTACGGCGATGAGTTC 113271 Query 8161 GAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCGGCAAGTGAAAGCGCGC 8220 || | | |||| | ||||| | ||| | || | | | | || | || Sbjct 113270 GAGGAGCTCTACACCCGTTACGAGC------GCGAGAACAAGGGTCGCGAGACTGTTCGT 113217 Query 8221 GACCTGCACC------GCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATG 8274 | || | | | ||||||| |||| || | || || || | |||| |||| Sbjct 113216 GCCCAGAAGCTCTGGTACGCCATTCTCGAGGCGCAGACTGAGACTGGCAACCCGTTCATG 113157 Query 8275 CTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGC 8334 |||||||| |||||||||||| || ||| || | ||| | || |||||| | || Sbjct 113156 CTGTACAAGGACGCTTGCAACAGGAAGTCCAACCAGAAGAACCTCGGTACCATTCGCAGC 113097 Query 8335 AGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAAT 8394 ||| || ||| |||| ||||| ||| || || || || || || ||||| ||||| Sbjct 113096 TCCAACCTCTGCACTGAGATTGTCGAGTTCACTGCTCCTGATGAGGTCGCCGTGTGCAAC 113037 Query 8395 CTAGCGTC 8402 || || || Sbjct 113036 CTGGCTTC 113029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505395424466920