Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq113 141 9e-29
seq465 100 3e-16
>seq113
Length=382967
Score = 141 bits (156), Expect = 9e-29
Identities = 171/230 (74%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CG 134543
||||||| | || |||| |||||| ||||| ||||| ||||| || |||||||||| ||
Sbjct 361739 TTCCTCCGCGCAGGCGCAGCACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCCG 361798
Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603
|| | ||| | ||| || ||||| ||||| ||||| ||||| |||||||| || ||
Sbjct 361799 ACAGC-GTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGA 361857
Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663
|| ||||| || || || || || || ||||| ||| | ||||||||| || ||
Sbjct 361858 GGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATTGTGTCGGATGACTCT 361917
Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || || ||||| || ||||| | || || ||||| || |||||
Sbjct 361918 ACTTCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 361967
Score = 104 bits (114), Expect = 2e-17
Identities = 162/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 134483 CTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC 134542
|| |||||| | || || | ||| | ||| || || || ||||| ||||||||||||||
Sbjct 361509 CTGTCCTCCACGCAGGCGGAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTC 361568
Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602
| | ||| | || || ||||| || || ||||| || | ||||||||| || ||
Sbjct 361569 GGAGAGAGTGCGGCCATCCTCCAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGG 361628
Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662
|| || || || || || || || || |||||| ||| | || ||||| || ||
Sbjct 361629 AGGGATACCCTCCTTATCCTGGATCTTCGATTTGACGTTGTCAATGGTATCGGATGACTC 361688
Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714
|| || || || ||||| || || || | || || ||||| || ||||||
Sbjct 361689 TACTTCTAGCGTGATGGTCTTTCCAGTGAGCGTCTTGACGAAGATCTGCATT 361740
Score = 95.1 bits (104), Expect = 1e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | || ||||| ||||| || ||||| || |||||||||||| |
Sbjct 361969 CCACCGCGGAGACGGAGGACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAA 362028
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| |||| | ||| || ||||||||||| || || ||||| |||||||| || || ||
Sbjct 362029 AGGGTGCGGCCGTCCTCAAGCTGTTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGA 362088
Query 134607 ATGCCTTCTTTTTCT 134621
||||| || || |||
Sbjct 362089 ATGCCCTCCTTGTCT 362103
>seq465
Length=132516
Score = 100 bits (110), Expect = 3e-16
Identities = 531/848 (63%), Gaps = 15/848 (2%)
Strand=Plus/Minus
Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623
|| |||||||| |||| || || || ||||| || |||||||||||||| ||| |
Sbjct 113870 CAGCACATGCTCATGCGTGTCGCCGTTGGCATCCATGGCGAAGACATTGAGAAGGCCATT 113811
Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683
|| || ||| | ||||| || | || || || || ||||| || |||| |
Sbjct 113810 GAGACCTACGACTACATGTCGCAAAAGTACTTCACACATGCCTCGCCTACGCTGTTCAAC 113751
Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743
||||| || | ||||| |||| || || || | | |||| || ||||||
Sbjct 113750 GCGGGAACGCCCAACCCTCAGATGTCATCCTGCTTCCTCATCGACATGAAGGAGGACAGC 113691
Query 7744 ATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGA 7803
|||||||| || ||| |||| ||| || || || ||||| || |||||
Sbjct 113690 ATCGACGGTATCTACGACACACTGAAGACGTGTGCGTTGATCTCCAAGACCGCTGGCGGC 113631
Query 7804 ATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGA 7863
|| || || || || || | | || |||| ||| | ||| | ||||||||||
Sbjct 113630 ATTGGACTCAATGTGCACCGCATCCGTGCCACCGGCTCCTACATTGGTGGCACCAACGGA 113571
Query 7864 AAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGAC 7923
| | ||| ||| | || ||| | || || | ||| ||| | | || | || ||
Sbjct 113570 ACATCCAATGGTCTCATCCCGATGCTCCGTGTCTACAACAACACCGCTCGCTACGTCGAT 113511
Query 7924 CAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGAC 7980
||||| || |||||| || || |||||||| | ||||| |||||||||||
Sbjct 113510 CAGGGTGGCAACAAGCGCCCTGGTGCTTTCGCCATCTACCTCGAGCCATGGCACGCGGAT 113451
Query 7981 ATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCGAT 8040
| | || | || | || || ||| ||| ||||| ||| || ||
Sbjct 113450 GTATTCGGCTTCCTTGACCTACGCAAGAACCACGGTAAGGAAGAGGTACGAGCTCGTGAC 113391
Query 8041 CTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAA 8100
|| |||| || | ||| | |||||||| || |||| ||| || || ||| |
Sbjct 113390 CTCTTCTACGCCCTCTGGATTCCCGATCTCTTCATGAAGCGAGTGCAAGAGAACGGCGAG 113331
Query 8101 TGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTT 8160
||| | |||||||||||| | |||||| | |||| ||||| | ||
Sbjct 113330 TGGACACTCATGTGCCCCAACGAGTGCCCTGGTCTTGCCGACGTCTACGGCGATGAGTTC 113271
Query 8161 GAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCGGCAAGTGAAAGCGCGC 8220
|| | | |||| | ||||| | ||| | || | | | | || | ||
Sbjct 113270 GAGGAGCTCTACACCCGTTACGAGC------GCGAGAACAAGGGTCGCGAGACTGTTCGT 113217
Query 8221 GACCTGCACC------GCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATG 8274
| || | | | ||||||| |||| || | || || || | |||| ||||
Sbjct 113216 GCCCAGAAGCTCTGGTACGCCATTCTCGAGGCGCAGACTGAGACTGGCAACCCGTTCATG 113157
Query 8275 CTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGC 8334
|||||||| |||||||||||| || ||| || | ||| | || |||||| | ||
Sbjct 113156 CTGTACAAGGACGCTTGCAACAGGAAGTCCAACCAGAAGAACCTCGGTACCATTCGCAGC 113097
Query 8335 AGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAAT 8394
||| || ||| |||| ||||| ||| || || || || || || ||||| |||||
Sbjct 113096 TCCAACCTCTGCACTGAGATTGTCGAGTTCACTGCTCCTGATGAGGTCGCCGTGTGCAAC 113037
Query 8395 CTAGCGTC 8402
|| || ||
Sbjct 113036 CTGGCTTC 113029
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505395424466920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |