Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq465 269 3e-67 seq6 114 2e-20 >seq465 Length=132516 Score = 269 bits (298), Expect = 3e-67 Identities = 1114/1739 (64%), Gaps = 31/1739 (2%) Strand=Plus/Plus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 || || |||||||| |||||||| | || | ||||| || | |||||| |||| | Sbjct 112150 CGAAGGTAGTACATGCCGGTCTTCAAACCGAGCTTCCAGCCGGCGAAATGCATGGAAGTG 112209 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAG 110482 | ||| ||| || || | |||| || ||||| ||| ||| || |||||| Sbjct 112210 ATCTTACCCATGGTGGGCTCCTTCATGTGGATGTTCAATGACTGAGATTGATCGATGAAG 112269 Query 110483 CGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGA 110542 || || | || ||||| | |||| | | |||||||| || || Sbjct 112270 GCACCGCGGTCAGCAGCCATCTGGATGATGGTACGCTGCGAGATTTCCCATACGGTCTTG 112329 Query 110543 TAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTC 110602 || || ||||| | || |||||||| | | ||| ||||||||||||| || | | | Sbjct 112330 TAAAGGGTCTTGGTCTCTTCTGGGATGTTGGGGATCCTCTGGATGGAACCACCATC-TGC 112388 Query 110603 ACCATGAGA---TCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACG 110659 | |||| | | |||||| | || ||||||||||| || | |||||| |||| | Sbjct 112389 A--ATGATACGGTTCTTCATGTTCTCAGACCAGAGACCCATGTCGACGAGGTCCTTGAGG 112446 Query 110660 AGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTT 110719 || |||||| | |||||||| || || | | ||||||||| | Sbjct 112447 AGCCAAGGGTTGACGACCTGGAACTCACCAGCCAGCACACGACGTGAGTAGATGTTCGAG 112506 Query 110720 GTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 110779 |||||||| || ||||| || || || || | || || | || ||||| || ||||| Sbjct 112507 GTGTATGGCTCGAAGCACTCGTTGTTTCCAAGAATCTGCGAAGTCGAGGCAGTAGGCATG 112566 Query 110780 GGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCC 110839 || || | || ||| ||| || | ||| | || ||| ||||| | | || Sbjct 112567 GGCGCAACCAGGAGAGAGTTGCGCACACCATGCTGAGCGATCTTGTCCTTCAACGAAGCC 112626 Query 110840 CAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGG 110897 ||||| | | | || || |||| |||| | || |||||||| || | || Sbjct 112627 CAGTCCCAAAGGTCAGAA-GGAGTCACGC-CCCAGAGATCGTACTGAAGCTGACCCTTGG 112684 Query 110898 ACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCG 110957 || | || |||||||| | || |||| | ||| | | | || | || ||| || Sbjct 112685 ACACAGGCGAACCCTCGTATGTAGCATATGGACCAAGCTCCTTGGCGATATCGCAGGACG 112744 Query 110958 CCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCAT 111017 | || | ||||| || || || || ||||| | | || | || |||||||||| Sbjct 112745 ACGTGAGAGCCGCGTGGTAAATTGTCTCGAAGATCTGGGTGTTGAGCTTCTTGGCTTCAG 112804 Query 111018 CTGAATCAAATGCGTAGCGGCACAAA-----ATAAATACATCCGCGAGACCTTGAACACC 111072 || ||||| | || | || || | || |||| || ||||| |||||||| Sbjct 112805 TCGACTCAAAAG----GCAG-ACGAAGGGCGAGGAAAGCATCAGCAAGACCCTGAACACC 112859 Query 111073 CAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATT 111132 | ||| || || || || || | ||| || || ||| || || || || Sbjct 112860 AAGACCGATGGGCCTATGGCGGAAATTGCTGCGGCGTGCCTCCTCCACAGGGTAGTGGTT 112919 Query 111133 TCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTC 111192 || |||| ||| || || || || | | | || | || || || || | Sbjct 112920 GACCTCGATGATCTTGTTGAGGTTACGTGTGACGACCATGGTCACCTCGTGGAGCTTGTG 112979 Query 111193 ATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATT 111252 | || || || | || | | |||| | ||||||||||| || |||| || Sbjct 112980 GAAGTCGAACTCGCCACGCTTGTAGTCGACAAAGGATGGAAGGGCGAGGGAAGCCAGGTT 113039 Query 111253 GCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACT 111312 ||| || || |||||| | | ||| |||| | ||| || || || | |||||| || Sbjct 113040 GCACACGGCGACCTCATCAGGAGCAGTGAACTCGACAATCTCAGTGCAGAGGTTGGAGCT 113099 Query 111313 CTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCAT 111372 ||| || || | ||||| ||||| |||| ||||||| || |||||||| ||||| Sbjct 113100 GCGAATGGTACCGAGGTTCTTCTGGTTGGACTTCCTGTTGCAAGCGTCCTTGTACAGCAT 113159 Query 111373 GTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTG 111431 | | || | || ||||| ||||| | | |||||| || | ||| | | || | ||| Sbjct 113160 GAACGGGTTGCCAGTCTCAGTCTGCGCCTCGAGAATGGCGTACCAGAGCTTCTG-GGCAC 113218 Query 111432 GTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCC 111490 | ||| | || | ||| | ||| |||||| |||||||| | || ||||| Sbjct 113219 GAACAGTCTCG-CGACCCTTGTTCTCGCGCTCGTAACGGGTGTAGAGCTCCTCGAACTCA 113277 Query 111491 TCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCA 111550 || || |||||| ||||| || || || || || | || | ||| | || Sbjct 113278 TCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATGAGTGTCCACTCGCCG 113337 Query 111551 CCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA 111610 || | || ||||||||||| || || |||||||| |||| | ||||| || | | Sbjct 113338 TTCTCTTGCACTCGCTTCATGAAGAGATCGGGAATCCAGAGGGCGTAGAAGAGGTCACGA 113397 Query 111611 CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCG 111670 || ||||||| | ||| ||||| |||| |||||||| | | | ||||||| Sbjct 113398 GCTCGTACCTCTTCCTTACCGTGGTTCTTGCGTAGGTCAAGGAAGCCGAATACATCCGCG 113457 Query 111671 TGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTAC 111726 ||||||||||| || |||| |||| || || | | | | ||| | |||| || Sbjct 113458 TGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGGCGCTTGTTG-CCACCCTGATCGAC 113516 Query 111727 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 111786 ||||| || ||| ||| | || || ||||| || || | ||||| ||| || || Sbjct 113517 GTAGCGAGCGGTGTTGTTGTAGACACGGAGCATCGGGATGAGACCATTGGATGTTCCGTT 113576 Query 111787 TGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 111846 || || | ||| || |||| | | || | | | ||||| || || Sbjct 113577 GGTGCCACCAATGTAGGAGCCGGTGGCACGGATGCGGTGCACATTGAGTCCAATGCCGCC 113636 Query 111847 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 111906 ||| ||| ||||| ||||||| | | || || | |||||||||| ||| ||| Sbjct 113637 AGCGGTCTTGGAGATCAACGCACACGTCTTCAGTGTGTCGTAGATACCGTCGATGCTGTC 113696 Query 111907 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAA 111966 |||||| || |||| |||||||| |||||||| || | || || || || ||||| Sbjct 113697 CTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGAGGGTTGGGCGTTCCCGCGTTGAA 113756 Query 111967 GAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCTTGTCGTATGTCTCCAAGA 112025 || || || | || || |||| ||| ||| ||||| | |||||| ||||| | | Sbjct 113757 CAGCGTAGGCGAGGCATGTGTGAA-GTACTTTTGCGACATGTAGTCGTAGGTCTCAATGG 113815 Query 112026 CAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 | ||||||||||| || |||||||| | ||||| ||||||| ||||| ||||||| Sbjct 113816 CCTTCTCAATGTCTTCGCCATGGATGCCAACGGCGACACGCATGAGCATGTGCTGTGGG 113874 >seq6 Length=114070 Score = 114 bits (126), Expect = 2e-20 Identities = 284/427 (67%), Gaps = 22/427 (5%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || ||||| |||||||| |||||||||||||| || | || ||||| ||||| Sbjct 15668 TAATCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCGCGAGCGAGATGTTCTCCATG 15609 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA--TGGGTGGCACC-----CCAACTTGTTTGAG 122483 ||||| || || || | ||||| | | | |||| || ||||| || Sbjct 15608 AAGTCGAAGGGGTTGGTGGCGTTGTAGACCTTGGTGTTGCCAAGGGCCAAC-------AG 15556 Query 122484 GAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG 122543 || || || | || |||| ||||||| | |||| || ||||| |||| || Sbjct 15555 CAGGCGGTCAGCGACGAACTCGATGTACTGGCACATGAGGGTGGAATTCATGCCGAGCAG 15496 Query 122544 GTTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGAT 122603 || ||||| || || || |||| | | |||||||||||| ||||| | | ||| Sbjct 15495 AGCGCAGGGGAGAGCTTCGGTGAGGAACTCCTGCTCAATCTCAACAGCCTCGGTGATGAT 15436 Query 122604 GGCGTGGATAGTTTCGGTAGTGGGTC---TATTACGCAAAGTCTTGAAGAGCTCCACGGC 122660 ||| | || | || | |||| | | || | | || ||||||| || Sbjct 15435 GGCCTTGACGGCATCCTTGCTGGGGCGGGTGTTGAGAAGAGA---GAAGAGCAGGCATGC 15379 Query 122661 AAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGG 122720 ||| || ||| | ||||| || ||||| || || || || |||||| |||||||| Sbjct 15378 AAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGG 15319 Query 122721 CATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATAC 122779 ||| ||||| |||||||| | ||| | || | ||| ||| || ||| ||||||||||| Sbjct 15318 CATCAGACCGCGCTTCTTGAGCCAGAAGATGGACGC-GAAAGAGCCGCTGAAGAAGATAC 15260 Query 122780 CCTCCAC 122786 |||| || Sbjct 15259 CCTCAAC 15253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028302461600