Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq465 262 5e-65 seq6 132 6e-26 >seq465 Length=132516 Score = 262 bits (290), Expect = 5e-65 Identities = 1118/1743 (64%), Gaps = 55/1743 (3%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || ||||||||||| || ||||| | || |||||||| | | |||||| || | Sbjct 112150 CGAAGGTAGTACATGCCGGTCTTCAAACCGAGCTTCCAGCCGGCGAAATGCATGGAAGTG 112209 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | ||| | ||| || | |||| || ||||| || ||||||||||||||| Sbjct 112210 ATCTTACCCATGGTGGGCTCCTTCATGTGGATGTTCAATGACTGAGATTGATCGATGAAG 112269 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTG 118016 || || || || ||||| | || | | | ||||||||| || ||| || Sbjct 112270 GCACCGCGGTCAGCAGCCATCTGGATGATGGTACGCTGCGAGATTTCCCATACGGTCTTG 112329 Query 118017 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTG 118076 || ||| |||| | || |||||||| | ||| | |||||||| ||||| | || Sbjct 112330 TAAAGGGTCTTGGTCTCTTCTGGGATGTTGGGGATCCTCTGGATGGAACCACCATC--TG 112387 Query 118077 ACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 118133 | |||| | | |||||| | || ||||||||||| || | ||| |||| | | Sbjct 112388 -CAATGATACGGTTCTTCATGTTCTCAGACCAGAGACCCATGTCGACGAGGTCCTTGAGG 112446 Query 118134 AGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTC-TCAGATAGATATTGGT 118192 || ||||| || |||||||| || || || | | || ||||| || | Sbjct 112447 AGCCAAGGGTTGACGACCTGGAACTCACCAGCCAGCACACGACGTGAG-TAGATGTTCGA 112505 Query 118193 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 118252 ||||||||||| |||||||| ||||| || | || || | || ||||| || ||||| Sbjct 112506 GGTGTATGGCTCGAAGCACTCGTTGTTTCCAAGAATCTGCGAAGTCGAGGCAGTAGGCAT 112565 Query 118253 GGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTC 118312 ||| || | || || ||| || | ||| | | || ||||| | | | Sbjct 112566 GGGCGCAACCAGGAGAGAGTTGCGCACACCATGCTGAGCGATCTTGTCCTTCAACGAAGC 112625 Query 118313 CCAGT--CGTAGTTGAG-CTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTG 118369 ||||| | || | || ||| | || ||| | ||| |||| || ||| | Sbjct 112626 CCAGTCCCAAAGGTCAGAAGGAGTCACGCC---CCAGAGATCGTACTGAAGCTGACCCTT 112682 Query 118370 GGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC---GCCAATTCGGA 118426 |||| | ||||| ||||| |||| ||||||| | ||| |||| || | ||| | Sbjct 112683 GGACACAGGCGAACCCTCGTATGTAGCATATGGAC---CAAGCTCCTTGGCGATATCGCA 112739 Query 118427 GCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGC 118486 | || | ||| || ||||| || ||||| || || || | | || | |||||| Sbjct 112740 GGACGACGTGAGAGCCGCGTGGTAAATTGTCTCGAAGATCTGGGTGTTGAGCTTCTTGGC 112799 Query 118487 CTC-GTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACAC 118545 || ||| || ||||| | || || | || |||| || ||||| || |||| Sbjct 112800 TTCAGTC-GACTCAAAAGGCAGACGAAGGGCGAGGAAAGCATCAGCAAGACCCTGAACAC 112858 Query 118546 CGAGGCCAATTGGGCGATGTCTCATATTAGACTTC--CGAGCGGTCTCCACGGGATAAAA 118603 | || || || || | ||| | | ||| || | || || |||||| || || Sbjct 112859 CAAGACCGATGGGCCTATGGCGGAAATT--GCTGCGGCGTGCCTCCTCCACAGGGTAGTG 112916 Query 118604 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 118663 || ||||| | | | || || || ||||| ||| | || | || || ||||| Sbjct 112917 GTTGACCTCGATGATCTTGTTGAGGTTACGTGTGACGACCATGGTCACCTCGTGGAGCTT 112976 Query 118664 TTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAG 118723 | | | || || || | || | | |||| | |||||||||| || ||||| Sbjct 112977 GTGGAAGTCGAACTCGCCACGCTTGTAGTCGACAAAGGATGGAAGGGCGAGGGAAGCCAG 113036 Query 118724 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGA 118783 || ||||| | | |||||| | ||||| |||| | ||| || ||||| | ||| || Sbjct 113037 GTTGCACACGGCGACCTCATCAGGAGCAGTGAACTCGACAATCTCAGTGCAGAGGTTGGA 113096 Query 118784 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAG 118843 || |||||| || | |||||| || || ||||| |||| || || |||||||| || Sbjct 113097 GCTGCGAATGGTACCGAGGTTCTTCTGGTTGGACTTCCTGTTGCAAGCGTCCTTGTACAG 113156 Query 118844 CATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAG 118902 |||| | || | || ||||| || || | || |||||| || | ||||| | || | | Sbjct 113157 CATGAACGGGTTGCCAGTCTCAGTCTGCGCCTCGAGAATGGCGTACCAGAGCTTCTG-GG 113215 Query 118903 CTGGCACAGTGGCGTTGGCTCG-CCCCTCTTC-----CTCGTACTTTGTGTAGAGGGCTT 118956 | | ||||| || || ||| | ||| |||||| |||||||| | | Sbjct 113216 CACGAACAGTCTCG------CGACCCTTGTTCTCGCGCTCGTAACGGGTGTAGAGCTCCT 113269 Query 118957 CAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACC 119016 | ||||| || || | | || | || || || || | ||||| | ||| | || Sbjct 113270 CGAACTCATCGCCGTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATGAGTGTCC 113329 Query 119017 ATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGA 119076 | | || ||| | || |||||||||||||| || || |||||||| || |||||| Sbjct 113330 ACTCGCCGTTCTCTTGCACTCGCTTCATGAAGAGATCGGGAATCCAGAGGGCGTAGAAGA 113389 Query 119077 GATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 119136 | || ||| || | ||||| | || || || || | || | ||| | | | Sbjct 113390 GGTCACGAGCTCGTACCTCTTCCTTACCGTGGTTCTTGCGTAGGTCAAGGAAGCCGAATA 113449 Query 119137 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAG 119190 |||||||||||| || || ||||| | |||| | || | | || ||| Sbjct 113450 CATCCGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACC---AGGGCGCTTGTTGCCAC 113506 Query 119191 CCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGG 119250 |||| | || || | || ||| ||| | ||||| ||||| || |||| ||||| || Sbjct 113507 CCTGATCGACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATCGGGATGAGACCATTGG 113566 Query 119251 ATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATCGTGGATGTGCAT 119308 || || || || || | || || ||| | |||| | || ||| | | | Sbjct 113567 ATGTTCCGTTGGTGCCACCAATGTAGGAGCC--GGTGGCACGGATGCGGTGCACATTGAG 113624 Query 119309 ACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCC 119368 ||||| || || || ||| ||||| ||| ||| | | || || ||||||| || Sbjct 113625 TCCAATGCCGCCAGCGGTCTTGGAGATCAACGCACACGTCTTCAGTGTGTCGTAGATACC 113684 Query 119369 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGT 119428 ||||| ||| |||| | |||||||||||||| ||||| ||||| |||| || Sbjct 113685 GTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGAGGGTTGGGCGT 113744 Query 119429 ACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTGTCGT 119487 || |||||||| || || || | || || |||| ||| ||| ||||| | ||||| Sbjct 113745 TCCCGCGTTGAACAGCGTAGGCGAGGCATGTGTGAA-GTACTTTTGCGACATGTAGTCGT 113803 Query 119488 AGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACA 119547 ||||||| | | | ||||||||| || || || || | | ||| ||||| | || Sbjct 113804 AGGTCTCAATGGCCTTCTCAATGTCTTCGCCATGGATGCCAACGGCGACACGCATGAGCA 113863 Query 119548 TGT 119550 ||| Sbjct 113864 TGT 113866 >seq6 Length=114070 Score = 132 bits (146), Expect = 6e-26 Identities = 310/457 (68%), Gaps = 22/457 (5%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTT-CCCGTCCAAGCT-GATATTCTCCA 129785 || || || || ||||||||||||||||| ||||| |||| | ||| ||| ||||||| Sbjct 15668 TAATCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCG--CGAGCGAGATGTTCTCCA 15611 Query 129786 TAAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGCTGGCACTCCAATCTGTTTGAGGAG 129843 | || || || ||||| | | ||| | | ||| || | ||| || || Sbjct 15610 TGAAGTCGAAGGGGTTGGTGGCGTTGTAGACCTTGGTGTTGC--CAAGGGCCAACAGCAG 15553 Query 129844 ACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT 129903 || || | |||| |||| ||||||| |||| ||| ||||| |||| || Sbjct 15552 GCGGTCAGCGACGAACTCGATGTACTGGCACATGAGGGTGGAATTCATGCCGAGCAGAGC 15493 Query 129904 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGC 129963 || ||||| || || || |||| ||| |||||| || ||||| || | |||||| Sbjct 15492 GCAGGGGAGAGCTTCGGTGAGGAACTCCTGCTCAATCTCAACAGCCTCGGTGATGATGGC 15433 Query 129964 GTGAATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACG---GC 130017 | | || ||| ||| || | | ||| | | || |||||| || | || Sbjct 15432 CTTGACGGCATCCTTGCTGGGGCGGGTGTTGAGAAGAGA---GAAGAG---CAGGCATGC 15379 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 ||| || ||| | |||||||||||||||||||| || || |||||| |||||||| Sbjct 15378 AAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGG 15319 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGATCC 130136 ||| ||||| |||||||| | |||||| || | | | ||| ||||| ||||||||| | Sbjct 15318 CATCAGACCGCGCTTCTTGAGCCAGAAGATGGACGCGAAA-GAGCCGCTGAAGAAGATAC 15260 Query 130137 CCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA 130173 |||| || || || || | |||||| | ||||| Sbjct 15259 CCTCAACGGCAGCAAAGGCGACGAGACGGTTGGCAAA 15223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618431558962760