Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq465 259 5e-64 >seq465 Length=132516 Score = 259 bits (286), Expect = 5e-64 Identities = 415/591 (70%), Gaps = 4/591 (1%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| |||||| | || ||||| || || ||| | | | |||||| |||| Sbjct 113860 TCATGCGTGTCGCCGTTGGCATCCATGGCGAAGACATTGAGAAGGCCATTGAGACCTACG 113801 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 ||| ||| ||||||||||| || || ||| |||| || ||||||||||| || ||| Sbjct 113800 ACTACATGTCGCAAAAGTACTTCACACATGCCTCGCCTACGCTGTTCAACGCGGGAACGC 113741 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 ||||||||||||| ||||||||| | | |||||||| ||| |||||||| | Sbjct 113740 CCAACCCTCAGATGTCATCCTGCTTCCTCATCGACATGAAGGAGGACAGCATCGACGGTA 113681 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| || || ||| |||||| ||||||||| | || || || || || Sbjct 113680 TCTACGACACACTGAAGACGTGTGCGTTGATCTCCAAGACCGCTGGCGGCATTGGACTCA 113621 Query 53433 AC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491 | ||| | | ||||||| | |||| | || || || ||||| || || Sbjct 113620 ATGTGCACCG-CATCCGTGCCACCGGCTCCTACATTGGTGGCACCAACGGAACATCCAAT 113562 Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 || || | || |||||||| |||| ||||||||| || || |||||| | |||||||| Sbjct 113561 GGTCTCATCCCGATGCTCCGTGTCTACAACAACACCGCTCGCTACGTCGATCAGGGTGGC 113502 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 |||||| || | |||||||||||||||||||| |||||||| || | | | Sbjct 113501 AACAAGCGCCCTGGTGCTTTCGCCATCTACCTCGAGCCATGGCACGCGGATGTATTCGGC 113442 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TAC 53670 || || || || || ||| || ||| | |||||| | || |||||||| || ||| Sbjct 113441 TTCCTTGACCTACGCAAGAACCACGGTAAGGAAGAGGTACGAGCTCGTGACCTCTTCTAC 113382 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 || || |||||||| || ||||||||| | ||| | || ||| |||||| || Sbjct 113381 -GCCCTCTGGATTCCCGATCTCTTCATGAAGCGAGTGCAAGAGAACGGCGAGTGGACACT 113323 Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTT 53781 |||||||| ||||||||||| || || | |||||||| || ||||| Sbjct 113322 CATGTGCCCCAACGAGTGCCCTGGTCTTGCCGACGTCTACGGCGATGAGTT 113272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212778265800