Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq465 255 7e-63 seq113 163 3e-35 seq53 120 3e-22 seq267 111 2e-19 seq6 84.2 2e-11 >seq465 Length=132516 Score = 255 bits (282), Expect = 7e-63 Identities = 639/961 (66%), Gaps = 26/961 (3%) Strand=Plus/Plus Query 80809 TCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAG 80868 ||||||| ||| ||||| ||||| || ||| || || || || || || || ||| Sbjct 112924 TCGATGATCTTGTTGAGGTTACGTGTGACGACCATGGTCACCTCGTGGAGCTTGTGGAAG 112983 Query 80869 TCGAATTGGTTCCCCTTC------ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCAC 80922 ||||| | | | ||| ||||| | |||||| ||||| ||||| |||||| Sbjct 112984 TCGAACTCGCCACGCTTGTAGTCGACAAAGGATGGAAGGGCGAGGGAAGCCAGGTTGCAC 113043 Query 80923 ACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTA 80982 ||||| ||||| |||| | | || |||||||| || || ||||| | || || | Sbjct 113044 ACGGCGACCTCATCAGGAGCAGTGAACTCGACAATCTCAGTGCAGAGGTTGGAGCTGCGA 113103 Query 80983 ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTAC 81042 || ||||| ||||| |||||||| ||||| |||||||||||||||||| |||| || Sbjct 113104 ATGGTACCGAGGTTCTTCTGGTTGGACTTCCTGTTGCAAGCGTCCTTGTACAGCATGAAC 113163 Query 81043 GGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACC 81102 ||| | || ||||| ||| | || ||| ||||||| ||| | || | || || Sbjct 113164 GGGTTGCCAGTCTCAGTCTGCGCCTCGAGAATGGCGTACCAGAGCTTCTGGGCACGAACA 113223 Query 81103 ACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACC 81161 || ||| ||| ||| | | || || ||| ||| || ||||||| | || Sbjct 113224 GTCTCGCGACCCTTGTTCTCGCGCTCGTAACGGGTGTAGAGC-TCCTCGAACTCATCGCC 113282 Query 81162 GTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTT 81221 || | || | || | ||||||||||| |||||||| || ||| || | |||| Sbjct 113283 GTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATGAGTGTCCACTC---GCCGTT 113339 Query 81222 CTCT---ACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCA 81278 |||| || ||||||||| || || |||||||||||| ||| ||||| || | Sbjct 113340 CTCTTGCACTCGCTTCATGAAGAGATCGGGAATCCAGAGGGCGTAGAAGAGGTCACG--A 113397 Query 81279 GCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCA 81336 || || |||| || | ||| ||||| ||| | || || ||| | | | ||||| Sbjct 113398 GCTCGTACCTCTTCCTTACCGTGGTTCTTGCGTAGGTCAAGGAAGCCGAATACATCCGCG 113457 Query 81337 TGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACG 81393 ||||||||||| || || | ||||| | || ||| ||||||||| | |||| Sbjct 113458 TGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGGCGCTTGTTGCCACCCTGATCGACG 113517 Query 81394 TAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTC 81453 || || || || ||| | ||||| | ||| ||||||| ||||| || ||||| Sbjct 113518 TAGCGAGCGGTGTTGTTGTAGACACGGAGCATCGGGATGAGACCATTGGATGTTCCGTTG 113577 Query 81454 GTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATGCCAC 81511 || || | || || || |||| || | | ||| |||| || || ||||| | Sbjct 113578 GTGCCACCAATGTAGGAGCCGGTGGCACGGATGCGGTGCACATTG--AGTCCAATGCCGC 113635 Query 81512 CTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTAT 81571 | | ||| || ||| |||||| |||| || || || || || |||||||| | Sbjct 113636 CAGCGGTCTTGGAGATCAACGCACACGTCTTCAGTGTGTCGTAGATACCGTCGATGCTGT 113695 Query 81572 CTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGA 81631 | | |||||||| | | ||| ||| ||||||||||||| | | || || |||| Sbjct 113696 CCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGAGGGTTGGGCGTTCCCGCGTTGA 113755 Query 81632 ACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGA 81691 |||| || || | || || |||| || | ||||| ||| ||||| || || Sbjct 113756 ACAGCGTAGGCGAGGCATGTGTGAAGTACTTTTGCGACATGTAGTCGTAGGTCTCAATGG 113815 Query 81692 CGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTG-GGGC 81750 | ||| || || || || || || | || |||||||| | ||||| ||| |||| Sbjct 113816 CCTTCTCAATGTCTTCGCCATGGATGCCAACGGCGACACGCATGAGCATGTGCTGTGGGC 113875 Query 81751 G 81751 | Sbjct 113876 G 113876 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || || ||||||||||| ||||| | || |||||||||| | ||||| ||| Sbjct 112147 GTACGAAGGTAGTACATGCCGGTCTTCAAACCGAGCTTCCAGCCGGCGAAATGCATGGAA 112206 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||| ||| | | ||||| | || |||| |||||||| |||||||| ||| |||| Sbjct 112207 GTGATCTTACCCATGGTGGGCTCCTTCATGTGGATGTTCAATGACTGAGATTGATCGATG 112266 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 || || || || || || ||||| | || || | || | ||||||||||| || Sbjct 112267 AAGGCACCGCGGTCAGCAGCCATCTGGATGATGGTACGCTGCGAGATTTCCCATACGGT 112325 >seq113 Length=382967 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||||| ||||||||||| || || ||||| || |||||| Sbjct 361967 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACGCTTGAAGTAGAGTCATCC 361908 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| || || |||||||||||||| |||||||| |||||| Sbjct 361907 GACACAATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 361848 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || ||||| || ||||| || ||||| | || || || | ||||| || Sbjct 361847 CAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTGTCGGACTACAAC 361788 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| |||||||| ||||| || |||| || ||||| ||| Sbjct 361787 ATCCAGAAGGAGTCCACTCTACATCTCGTGCTGCGCCTGCGCGGAGGA 361740 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| ||||||||||| || || ||||| || || || || || |||||| Sbjct 361740 AATGCAGATCTTCGTCAAGACGCTCACTGGAAAGACCATCACGCTAGAAGTAGAGTCATC 361681 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||||| || | || | || || ||||| |||||||| || ||||| ||||| Sbjct 361680 CGATACCATTGACAACGTCAAATCGAAGATCCAGGATAAGGAGGGTATCCCTCCGGACCA 361621 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || |||||||| ||||| || ||||||| || || || | ||||| || Sbjct 361620 GCAGCGTCTCATCTTTGCTGGAAAGCAGCTGGAGGATGGCCGCACTCTCTCCGACTACAA 361561 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||| || ||||| || | || | || || || || ||||| Sbjct 361560 CATTCAGAAGGAGTCGACTCTGCACTTGGTGCTCCGCCTGCGTGGAGGACA 361510 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| ||||| || ||||||||||| | || || || || || || || ||| Sbjct 362102 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTCGCCGGCAAACAGCTTGAG 362043 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | || ||||| | ||||| || |||| ||||| || || || || || ||| | Sbjct 362042 GACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACGCTCCACCTGGTCCTC 361983 Query 27619 CGTCTTCGCGGTGG 27632 ||||| |||||||| Sbjct 361982 CGTCTCCGCGGTGG 361969 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 32101 CACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCA 32160 |||||||| || || | |||||||| |||||| ||| || ||||||||||||||| | Sbjct 100761 CACGGCGAAGCCTCCATGCAGGGCACTATTGTCGGCCTAGCCCAGAACTTTGTCGGTTCT 100702 Query 32161 AATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAG 32220 || ||| | |||| | |||||| || | || || | || || ||||| Sbjct 100701 AACAACATCAACTACTTGGAGCCAAGCGGTAACTTCGGCTCTCGTCTGAGAGGTGGTGCC 100642 Query 32221 GATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTC 32280 |||||||| ||| || | ||||| | ||| || ||| | || | |||| | | | ||| Sbjct 100641 GATGCTGCCAGCGCCAGGTACATTTACACGCGCCTCTCTCCGTTTGCGCGTAGGCTGTTC 100582 Query 32281 GACCCGTCGGACGATGCGGTGCTCAAGTA 32309 || | |||||||| | |||||||| Sbjct 100581 CACGCTCACGACGATGCACTTCTCAAGTA 100553 >seq53 Length=59568 Score = 120 bits (132), Expect = 3e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 |||| ||| | ||| | || || |||||||||||||| ||||| || ||||||||||| Sbjct 12567 ATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGC 12508 Query 27532 CTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAA 27591 || || || || || |||||||||||||||| || ||||| | ||||| || |||| Sbjct 12507 CTGATCTTCGCCGGCAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAG 12448 Query 27592 AAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || ||||| || | ||| | ||||| || || || Sbjct 12447 AAGGAGTCGACTCTGCACTTGGTCCTCCGTCTCCGTGGCGG 12407 >seq267 Length=290730 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| ||||| || |||||||||||||| || || || || ||||| |||||| Sbjct 207303 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAG 207244 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || || || | ||||| || |||| ||||| ||||| || |||||||| | Sbjct 207243 GATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCATCTAGTGCTC 207184 Query 27619 CGTCTTCGCGGTGG 27632 || || || ||||| Sbjct 207183 CGCCTGCGTGGTGG 207170 >seq6 Length=114070 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 64717 CGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATT 64776 ||||||| || ||||| || || || || ||||| || || ||| || || Sbjct 15232 CGTCTCGTCGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGCTCTTTCGCGTCCATC 15291 Query 64777 TTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCT 64836 |||||||| || ||||| || |||||||||||||| | || || |||||||| ||||| Sbjct 15292 TTCTGGCTCAAGAAGCGCGGTCTGATGCCAGGTCTTACCTTCTCCAACGAGCTCATCTCC 15351 Query 64837 CGGGACGAGGGGCTCCACCAAGAATTTGC 64865 || |||||||| | ||| || ||||| Sbjct 15352 CGTGACGAGGGCATGCACACCGACTTTGC 15380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307042297520