Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq465 255 7e-63
seq113 163 3e-35
seq53 120 3e-22
seq267 111 2e-19
seq6 84.2 2e-11
>seq465
Length=132516
Score = 255 bits (282), Expect = 7e-63
Identities = 639/961 (66%), Gaps = 26/961 (3%)
Strand=Plus/Plus
Query 80809 TCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAG 80868
||||||| ||| ||||| ||||| || ||| || || || || || || || |||
Sbjct 112924 TCGATGATCTTGTTGAGGTTACGTGTGACGACCATGGTCACCTCGTGGAGCTTGTGGAAG 112983
Query 80869 TCGAATTGGTTCCCCTTC------ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCAC 80922
||||| | | | ||| ||||| | |||||| ||||| ||||| ||||||
Sbjct 112984 TCGAACTCGCCACGCTTGTAGTCGACAAAGGATGGAAGGGCGAGGGAAGCCAGGTTGCAC 113043
Query 80923 ACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTA 80982
||||| ||||| |||| | | || |||||||| || || ||||| | || || |
Sbjct 113044 ACGGCGACCTCATCAGGAGCAGTGAACTCGACAATCTCAGTGCAGAGGTTGGAGCTGCGA 113103
Query 80983 ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTAC 81042
|| ||||| ||||| |||||||| ||||| |||||||||||||||||| |||| ||
Sbjct 113104 ATGGTACCGAGGTTCTTCTGGTTGGACTTCCTGTTGCAAGCGTCCTTGTACAGCATGAAC 113163
Query 81043 GGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACC 81102
||| | || ||||| ||| | || ||| ||||||| ||| | || | || ||
Sbjct 113164 GGGTTGCCAGTCTCAGTCTGCGCCTCGAGAATGGCGTACCAGAGCTTCTGGGCACGAACA 113223
Query 81103 ACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACC 81161
|| ||| ||| ||| | | || || ||| ||| || ||||||| | ||
Sbjct 113224 GTCTCGCGACCCTTGTTCTCGCGCTCGTAACGGGTGTAGAGC-TCCTCGAACTCATCGCC 113282
Query 81162 GTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTT 81221
|| | || | || | ||||||||||| |||||||| || ||| || | ||||
Sbjct 113283 GTAGACGTCGGCAAGACCAGGGCACTCGTTGGGGCACATGAGTGTCCACTC---GCCGTT 113339
Query 81222 CTCT---ACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCA 81278
|||| || ||||||||| || || |||||||||||| ||| ||||| || |
Sbjct 113340 CTCTTGCACTCGCTTCATGAAGAGATCGGGAATCCAGAGGGCGTAGAAGAGGTCACG--A 113397
Query 81279 GCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCA 81336
|| || |||| || | ||| ||||| ||| | || || ||| | | | |||||
Sbjct 113398 GCTCGTACCTCTTCCTTACCGTGGTTCTTGCGTAGGTCAAGGAAGCCGAATACATCCGCG 113457
Query 81337 TGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACG 81393
||||||||||| || || | ||||| | || ||| ||||||||| | ||||
Sbjct 113458 TGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGGCGCTTGTTGCCACCCTGATCGACG 113517
Query 81394 TAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTC 81453
|| || || || ||| | ||||| | ||| ||||||| ||||| || |||||
Sbjct 113518 TAGCGAGCGGTGTTGTTGTAGACACGGAGCATCGGGATGAGACCATTGGATGTTCCGTTG 113577
Query 81454 GTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATGCCAC 81511
|| || | || || || |||| || | | ||| |||| || || ||||| |
Sbjct 113578 GTGCCACCAATGTAGGAGCCGGTGGCACGGATGCGGTGCACATTG--AGTCCAATGCCGC 113635
Query 81512 CTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTAT 81571
| | ||| || ||| |||||| |||| || || || || || |||||||| |
Sbjct 113636 CAGCGGTCTTGGAGATCAACGCACACGTCTTCAGTGTGTCGTAGATACCGTCGATGCTGT 113695
Query 81572 CTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGA 81631
| | |||||||| | | ||| ||| ||||||||||||| | | || || ||||
Sbjct 113696 CCTCCTTCATGTCGATGAGGAAGCAGGATGACATCTGAGGGTTGGGCGTTCCCGCGTTGA 113755
Query 81632 ACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGA 81691
|||| || || | || || |||| || | ||||| ||| ||||| || ||
Sbjct 113756 ACAGCGTAGGCGAGGCATGTGTGAAGTACTTTTGCGACATGTAGTCGTAGGTCTCAATGG 113815
Query 81692 CGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTG-GGGC 81750
| ||| || || || || || || | || |||||||| | ||||| ||| ||||
Sbjct 113816 CCTTCTCAATGTCTTCGCCATGGATGCCAACGGCGACACGCATGAGCATGTGCTGTGGGC 113875
Query 81751 G 81751
|
Sbjct 113876 G 113876
Score = 84.2 bits (92), Expect = 2e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097
|| || || ||||||||||| ||||| | || |||||||||| | ||||| |||
Sbjct 112147 GTACGAAGGTAGTACATGCCGGTCTTCAAACCGAGCTTCCAGCCGGCGAAATGCATGGAA 112206
Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157
||| ||| | | ||||| | || |||| |||||||| |||||||| ||| ||||
Sbjct 112207 GTGATCTTACCCATGGTGGGCTCCTTCATGTGGATGTTCAATGACTGAGATTGATCGATG 112266
Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216
|| || || || || || ||||| | || || | || | ||||||||||| ||
Sbjct 112267 AAGGCACCGCGGTCAGCAGCCATCTGGATGATGGTACGCTGCGAGATTTCCCATACGGT 112325
>seq113
Length=382967
Score = 163 bits (180), Expect = 3e-35
Identities = 173/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| ||||||||||| ||||||||||| || || ||||| || ||||||
Sbjct 361967 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACGCTTGAAGTAGAGTCATCC 361908
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | || | ||| || || |||||||||||||| |||||||| ||||||
Sbjct 361907 GACACAATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 361848
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | || ||||| || ||||| || ||||| | || || || | ||||| ||
Sbjct 361847 CAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTGTCGGACTACAAC 361788
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
|||| ||||| |||||||| ||||| || |||| || ||||| |||
Sbjct 361787 ATCCAGAAGGAGTCCACTCTACATCTCGTGCTGCGCCTGCGCGGAGGA 361740
Score = 150 bits (166), Expect = 2e-31
Identities = 172/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| ||||| ||||||||||| || || ||||| || || || || || ||||||
Sbjct 361740 AATGCAGATCTTCGTCAAGACGCTCACTGGAAAGACCATCACGCTAGAAGTAGAGTCATC 361681
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| ||||| || | || | || || ||||| |||||||| || ||||| |||||
Sbjct 361680 CGATACCATTGACAACGTCAAATCGAAGATCCAGGATAAGGAGGGTATCCCTCCGGACCA 361621
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||||||||| || |||||||| ||||| || ||||||| || || || | ||||| ||
Sbjct 361620 GCAGCGTCTCATCTTTGCTGGAAAGCAGCTGGAGGATGGCCGCACTCTCTCCGACTACAA 361561
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
| || ||||| || ||||| || | || | || || || || |||||
Sbjct 361560 CATTCAGAAGGAGTCGACTCTGCACTTGGTGCTCCGCCTGCGTGGAGGACA 361510
Score = 93.3 bits (102), Expect = 5e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558
||||||||||| ||||| || ||||||||||| | || || || || || || || |||
Sbjct 362102 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTCGCCGGCAAACAGCTTGAG 362043
Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
|| | || ||||| | ||||| || |||| ||||| || || || || || ||| |
Sbjct 362042 GACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACGCTCCACCTGGTCCTC 361983
Query 27619 CGTCTTCGCGGTGG 27632
||||| ||||||||
Sbjct 361982 CGTCTCCGCGGTGG 361969
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 32101 CACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCA 32160
|||||||| || || | |||||||| |||||| ||| || ||||||||||||||| |
Sbjct 100761 CACGGCGAAGCCTCCATGCAGGGCACTATTGTCGGCCTAGCCCAGAACTTTGTCGGTTCT 100702
Query 32161 AATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAG 32220
|| ||| | |||| | |||||| || | || || | || || |||||
Sbjct 100701 AACAACATCAACTACTTGGAGCCAAGCGGTAACTTCGGCTCTCGTCTGAGAGGTGGTGCC 100642
Query 32221 GATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTC 32280
|||||||| ||| || | ||||| | ||| || ||| | || | |||| | | | |||
Sbjct 100641 GATGCTGCCAGCGCCAGGTACATTTACACGCGCCTCTCTCCGTTTGCGCGTAGGCTGTTC 100582
Query 32281 GACCCGTCGGACGATGCGGTGCTCAAGTA 32309
|| | |||||||| | ||||||||
Sbjct 100581 CACGCTCACGACGATGCACTTCTCAAGTA 100553
>seq53
Length=59568
Score = 120 bits (132), Expect = 3e-22
Identities = 123/161 (76%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531
|||| ||| | ||| | || || |||||||||||||| ||||| || |||||||||||
Sbjct 12567 ATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGC 12508
Query 27532 CTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAA 27591
|| || || || || |||||||||||||||| || ||||| | ||||| || ||||
Sbjct 12507 CTGATCTTCGCCGGCAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAG 12448
Query 27592 AAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||| || ||||| || | ||| | ||||| || || ||
Sbjct 12447 AAGGAGTCGACTCTGCACTTGGTCCTCCGTCTCCGTGGCGG 12407
>seq267
Length=290730
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558
||||||||||| ||||| || |||||||||||||| || || || || ||||| ||||||
Sbjct 207303 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAG 207244
Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
|||| || || || | ||||| || |||| ||||| ||||| || |||||||| |
Sbjct 207243 GATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCATCTAGTGCTC 207184
Query 27619 CGTCTTCGCGGTGG 27632
|| || || |||||
Sbjct 207183 CGCCTGCGTGGTGG 207170
>seq6
Length=114070
Score = 84.2 bits (92), Expect = 2e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 64717 CGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATT 64776
||||||| || ||||| || || || || ||||| || || ||| || ||
Sbjct 15232 CGTCTCGTCGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGCTCTTTCGCGTCCATC 15291
Query 64777 TTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCT 64836
|||||||| || ||||| || |||||||||||||| | || || |||||||| |||||
Sbjct 15292 TTCTGGCTCAAGAAGCGCGGTCTGATGCCAGGTCTTACCTTCTCCAACGAGCTCATCTCC 15351
Query 64837 CGGGACGAGGGGCTCCACCAAGAATTTGC 64865
|| |||||||| | ||| || |||||
Sbjct 15352 CGTGACGAGGGCATGCACACCGACTTTGC 15380
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570307042297520
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