Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq113 109 3e-19 seq53 89.7 3e-13 seq267 86.0 4e-12 >seq113 Length=382967 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| ||| | ||| |||||| |||||| || ||||| || || || || || || Sbjct 361750 AGGCGCAGCACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGG 361809 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || |||||||| || || ||||| |||||||| || | |||||| Sbjct 361810 CCGTCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGAGGAATGCCCTCC 361869 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | |||||||| ||| ||||| | || Sbjct 361870 TTGTCCTGGATC-TTGCTCTTGACGTTGTCGATTGTGTCGGATGACTCTACTTCAAGCGT 361928 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | ||| || || || |||||||| Sbjct 361929 GATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 361967 Score = 95.1 bits (104), Expect = 8e-15 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||||| || |||||| || ||||| || || ||||| || || Sbjct 361978 AGACGGAGGACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGG 362037 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| ||||| ||||| || || || ||||| |||||||| || | |||||| Sbjct 362038 CCGTCCTCAAGCTGTTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCC 362097 Query 34609 TTGTCTG 34615 ||||||| Sbjct 362098 TTGTCTG 362104 >seq53 Length=59568 Score = 89.7 bits (98), Expect = 3e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | ||||| || ||||| |||||| || ||||| || || || Sbjct 12406 GCCGCCACGGAGACGGAGGACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 12465 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | || || ||||| || ||||| || || | ||||| |||||||| || Sbjct 12466 AAGGGTGCGGCCATCCTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 12525 Query 34599 CACTCCCTCCTTGTCTGTGATCTT 34622 | ||||||||||| |||||| Sbjct 12526 AATGCCCTCCTTGTCCTGGATCTT 12549 >seq267 Length=290730 Score = 86.0 bits (94), Expect = 4e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||| | |||||| ||| |||||| || ||||| || || ||||| || || Sbjct 207179 AGGCGGAGCACTAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGG 207238 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | |||||| |||||||| || | |||||| Sbjct 207239 CCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCC 207298 Query 34609 TTGTCTG 34615 ||||||| Sbjct 207299 TTGTCTG 207305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727793353743