Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq113 109 3e-19
seq53 89.7 3e-13
seq267 86.0 4e-12
>seq113
Length=382967
Score = 109 bits (120), Expect = 3e-19
Identities = 157/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| |||| ||| | ||| |||||| |||||| || ||||| || || || || || ||
Sbjct 361750 AGGCGCAGCACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGG 361809
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| ||||| || || |||||||| || || ||||| |||||||| || | ||||||
Sbjct 361810 CCGTCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGAGGAATGCCCTCC 361869
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || ||| | |||||||| ||| ||||| | ||
Sbjct 361870 TTGTCCTGGATC-TTGCTCTTGACGTTGTCGATTGTGTCGGATGACTCTACTTCAAGCGT 361928
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || ||||| | ||| || || || ||||||||
Sbjct 361929 GATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 361967
Score = 95.1 bits (104), Expect = 8e-15
Identities = 97/127 (76%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||| ||||| || |||||| || ||||| || || ||||| || ||
Sbjct 361978 AGACGGAGGACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGG 362037
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| ||||| ||||| ||||| || || || ||||| |||||||| || | ||||||
Sbjct 362038 CCGTCCTCAAGCTGTTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCC 362097
Query 34609 TTGTCTG 34615
|||||||
Sbjct 362098 TTGTCTG 362104
>seq53
Length=59568
Score = 89.7 bits (98), Expect = 3e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
|||||| | ||||| | ||||| || ||||| |||||| || ||||| || || ||
Sbjct 12406 GCCGCCACGGAGACGGAGGACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 12465
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
||| || || | || || ||||| || ||||| || || | ||||| |||||||| ||
Sbjct 12466 AAGGGTGCGGCCATCCTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 12525
Query 34599 CACTCCCTCCTTGTCTGTGATCTT 34622
| ||||||||||| ||||||
Sbjct 12526 AATGCCCTCCTTGTCCTGGATCTT 12549
>seq267
Length=290730
Score = 86.0 bits (94), Expect = 4e-12
Identities = 95/127 (75%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | ||| | |||||| ||| |||||| || ||||| || || ||||| || ||
Sbjct 207179 AGGCGGAGCACTAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGG 207238
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || ||||| || || | |||||| |||||||| || | ||||||
Sbjct 207239 CCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCC 207298
Query 34609 TTGTCTG 34615
|||||||
Sbjct 207299 TTGTCTG 207305
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314727793353743
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |