Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq113 89.7 4e-13 seq53 86.0 5e-12 >seq113 Length=382967 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| | || || || ||||| || | ||| Sbjct 361739 ATGCAGATCTTCGTCAAGACGCTCACTGGAAAGACCATCACGCTAGAAGTAGAGTCATCC 361680 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | |||||| || || || || || || || || || || || || Sbjct 361679 GATACCATTGACAACGTCAAATCGAAGATCCAGGATAAGGAGGGTATCCCTCCGGACCAG 361620 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || |||| || | || | ||||| |||||| Sbjct 361619 CAGCGTCTCATCTTTGCTGGAAAGCAGCTGGAGGATGGCCGCACTCTCTCCGACTACAAC 361560 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| ||||||||||| | || ||||| | || |||| || || Sbjct 361559 ATTCAGAAGGAGTCGACTCTGCACTTGGTGCTCCGCCTGCGTGGAGG 361513 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 27080 AGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGA 27139 |||||| || ||||| || || || || ||||| || || | |||||||||||| | || Sbjct 362103 AGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTCGCCGGCAAACAGCTTGA 362044 Query 27140 AGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 ||| | ||| ||||||| |||||||| || ||||||||||| | || |||| | Sbjct 362043 GGACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACGCTCCACCTGGTCCT 361984 Query 27200 GCGTTTGCGGGGTGGCAT 27217 ||| | || ||||| || Sbjct 361983 CCGTCTCCGCGGTGGTAT 361966 >seq53 Length=59568 Score = 86.0 bits (94), Expect = 5e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 27053 GATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCG 27112 |||||| | ||||| || || || ||||| || ||||| || || || || ||||| Sbjct 12568 GATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCG 12509 Query 27113 TTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCA 27172 | || | ||||||||| ||| | || || | ||| ||||||| |||||||| || Sbjct 12508 CCTGATCTTCGCCGGCAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCA 12449 Query 27173 AAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| | || ||||| | ||| | || || ||||| Sbjct 12448 GAAGGAGTCGACTCTGCACTTGGTCCTCCGTCTCCGTGGCGGCAT 12404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434915839417920