Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq113 152 1e-31
seq53 118 2e-21
seq465 107 4e-18
seq267 98.7 2e-15
>seq113
Length=382967
Score = 152 bits (168), Expect = 1e-31
Identities = 161/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || || || ||||||||||| || |||||||| || |||| || || | || ||
Sbjct 361756 AGCACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCC 361815
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || ||||| | ||| || ||||| ||||||| || |||||||||
Sbjct 361816 TCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC 361875
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| ||||| ||||| || || || || || ||||| |||
Sbjct 361876 TGGATCTTGCTCTTGACGTTGTCGATTGTGTCGGATGACTCTACTTCAAGCGTGATGGTC 361935
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| ||||| || || | ||||||
Sbjct 361936 TTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 361967
Score = 141 bits (156), Expect = 2e-28
Identities = 167/226 (74%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| ||| || | || || | ||| ||||| ||||| || || ||||| || || | ||
Sbjct 361515 TCCACGCAGGCGGAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAGAG 361574
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
|| | ||||| ||||||||||| || || ||||| || || || ||||| ||||| |
Sbjct 361575 AGTGCGGCCATCCTCCAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGAT 361634
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|| ||||| ||||||||||| ||| ||||| || ||||| || || || || ||
Sbjct 361635 ACCCTCCTTATCCTGGATCTTCGATTTGACGTTGTCAATGGTATCGGATGACTCTACTTC 361694
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|| ||||| |||||||| ||||| ||||| || || | |||||||
Sbjct 361695 TAGCGTGATGGTCTTTCCAGTGAGCGTCTTGACGAAGATCTGCATT 361740
>seq53
Length=59568
Score = 118 bits (130), Expect = 2e-21
Identities = 103/128 (80%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | ||| ||||| ||||| || |||||||| || || | |||||| | |||||
Sbjct 12422 AGGACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCC 12481
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || |||||||| |||||||| ||||| || ||||| || |||| || |||||||||
Sbjct 12482 TCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 12541
Query 211023 TGGATCTT 211030
||||||||
Sbjct 12542 TGGATCTT 12549
>seq465
Length=132516
Score = 107 bits (118), Expect = 4e-18
Identities = 190/276 (69%), Gaps = 6/276 (2%)
Strand=Plus/Plus
Query 178093 GTTCTTTTGGTTGCTCTTTCTG---CAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149
|||||| |||||| ||| ||| ||| || || |||||| ||||| || | ||
Sbjct 113115 GTTCTTCTGGTTGGACTTCCTGTTGCAA---GCGTCCTTGTACAGCATGAACGGGTTGCC 113171
Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209
||||| || ||| |||||||| | ||| |||| |||||| || |||||||
Sbjct 113172 AGTCTCAGTCTGCGCCTCGAGAATGGCGTACCAGAGCTTCTGGGCACGAACAGTCTCGCG 113231
Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269
| || || |||||| |||||||||||||||| || || ||||| ||
Sbjct 113232 ACCCTTGTTCTCGCGCTCGTAACGGGTGTAGAGCTCCTCGAACTCATCGCCGTAGACGTC 113291
Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCG 178329
| ||||| || ||| |||||||| | ||| |||||| |||| || | ||||||
Sbjct 113292 GGCAAGACCAGGGCACTCGTTGGGGCACATGAGTGTCCACTCGCCGTTCTCTTGCACTCG 113351
Query 178330 TTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365
||||||||||| || | |||||| ||| |||||
Sbjct 113352 CTTCATGAAGAGATCGGGAATCCAGAGGGCGTAGAA 113387
>seq267
Length=290730
Score = 98.7 bits (108), Expect = 2e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || || || || |||||||| || |||||||| || |||| ||| || | |||||
Sbjct 207185 AGCACTAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCC 207244
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021
|| ||||||||||| |||||||| || || || ||||| || |||| || ||||||||
Sbjct 207245 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 207303
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159145004879915
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |