Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq113 179 8e-40 seq267 120 6e-22 seq6 118 2e-21 seq53 109 1e-18 >seq113 Length=382967 Score = 179 bits (198), Expect = 8e-40 Identities = 178/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || || ||||||| ||| || || |||||||||||||| | Sbjct 361741 CCTCCGCGCAGGCGCAGCACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 361800 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || |||||||||||||| || || ||||| ||| Sbjct 361801 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGAGGA 361860 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||| ||||| || ||| | ||||| ||||| || | || || Sbjct 361861 ATGCCCTCCTTGTCCTGGATC-TTGCTCTTGACGTTGTCGATTGTGTCGGATGACTCTAC 361919 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 361920 TTCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 361967 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||||||||| || |||| || | || || || || ||||||||||| | Sbjct 361513 CCTCCACGCAGGCGGAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAG 361572 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || |||||||| | ||| || ||||| || Sbjct 361573 AGAGTGCGGCCATCCTCCAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGG 361632 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| || |||||||| | ||| ||| | || || || || || | || ||| Sbjct 361633 ATACCCTCCTTATCCTGGATCTTCGATTTGACGTTGTCAATGGTATCGGATGACTCTACT 361692 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || ||||| ||||| || || | ||||| ||||| ||||||||| Sbjct 361693 TCTAGCGTGATGGTCTTTCCAGTGAGCGTCTTGACGAAGATCTGCATT 361740 Score = 111 bits (122), Expect = 3e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || ||||| || | ||| || || |||||||||||||| | Sbjct 361968 ACCACCGCGGAGACGGAGGACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGA 362027 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| || ||||| ||||| |||||||| || || ||||| || Sbjct 362028 AAGGGTGCGGCCGTCCTCAAGCTGTTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGG 362087 Query 282992 AATACCCTCCTTGTCT 283007 ||| |||||||||||| Sbjct 362088 AATGCCCTCCTTGTCT 362103 >seq267 Length=290730 Score = 120 bits (132), Expect = 6e-22 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || ||||| | ||| || || |||||||||||||| | Sbjct 207169 ACCACCACGCAGGCGGAGCACTAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 207228 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||||||||| || || || ||||| ||||| | ||| || ||||| || Sbjct 207229 AAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 207288 Query 282992 AATACCCTCCTTGTCTTGG 283010 ||| |||||||||||| || Sbjct 207289 AATGCCCTCCTTGTCTGGG 207307 >seq6 Length=114070 Score = 118 bits (130), Expect = 2e-21 Identities = 175/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222 ||| |||| || | |||| | ||| |||||||| | ||| ||| | || ||| | Sbjct 15436 ATCATCACCGAGGCTGTTGAGATTGAGCAGGAGTTCCTCACCGAAGCTCTCCCCTGCGCT 15495 Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || ||||||||||| | |||||| | || || ||||| ||||| ||||| || | Sbjct 15496 CTGCTCGGCATGAATTCCACCCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGCCTG 15555 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 | |||| || || || || || || ||| ||| |||||||||| || |||||| Sbjct 15556 CTGTTGGCCCTTGGCAACACCAAGGTCTACAACGCCACCAACCCCTTCGACTTCATGGAG 15615 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGG 230402 ||| || ||| ||| || || ||||||||||| ||||| ||| ||||||| || | | Sbjct 15616 AACATCTCGCTCGCGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGATTACCAGAAG 15675 Query 230403 CCCGGTGT 230410 | ||||| Sbjct 15676 GCTGGTGT 15683 >seq53 Length=59568 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || |||| || | || || || |||||||||||||| | | Sbjct 12407 CCGCCACGGAGACGGAGGACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 12466 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| ||||| || ||||| ||||||| || || ||||| ||| Sbjct 12467 AGGGTGCGGCCATCCTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGA 12526 Query 282993 ATACCCTCCTTGTCTTGGATCTT 283015 || ||||||||||| |||||||| Sbjct 12527 ATGCCCTCCTTGTCCTGGATCTT 12549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046732883256034