Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq113 136 1e-26 seq53 100 7e-16 seq267 93.3 1e-13 >seq113 Length=382967 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| ||||| || ||||| || || || || || || Sbjct 361736 CAGATCTTCGTCAAGACGCTCACTGGAAAGACCATCACGCTAGAAGTAGAGTCATCCGAT 361677 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||||||| ||||| ||||| || || || ||||||||||||||||| Sbjct 361676 ACCATTGACAACGTCAAATCGAAGATCCAGGATAAGGAGGGTATCCCTCCGGACCAGCAG 361617 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| ||||| || ||||| | ||||| |||| || ||| | Sbjct 361616 CGTCTCATCTTTGCTGGAAAGCAGCTGGAGGATGGCCGCACTCTCTCCGACTACAACATT 361557 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 361556 CAGAAGGAGTCGACTCTGCA-CTTG 361533 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||| || || || || || ||| Sbjct 361964 CAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACGCTTGAAGTAGAGTCATCCGAC 361905 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| |||||||| || || || |||||||||||||| Sbjct 361904 ACAATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAGCAG 361845 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| || ||||| || || || | || || | || || ||| || Sbjct 361844 CGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTGTCGGACTACAACATC 361785 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 361784 CAGAAGGAGTCCACTCTACATCTCGT 361759 >seq53 Length=59568 Score = 100 bits (110), Expect = 7e-16 Identities = 108/142 (76%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 || || || ||||| ||||| |||||||| || || || || ||||||||||| || Sbjct 12567 ATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGC 12508 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 || ||||||||||| || || ||||| ||||| | || ||| |||| || ||| |||| Sbjct 12507 CTGATCTTCGCCGGCAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAG 12448 Query 178107 AAAGAATCAACACTGCATCTTG 178128 || || || || ||||| |||| Sbjct 12447 AAGGAGTCGACTCTGCA-CTTG 12427 >seq267 Length=290730 Score = 93.3 bits (102), Expect = 1e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| || || || || ||||||||||| || || ||||||||||| || |||||||| Sbjct 207303 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAG 207244 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||| | |||||| | || || ||| |||| || || || || || ||||| || Sbjct 207243 GATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCATCTAGT 207188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203723935858374