Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq113 152 5e-32 seq53 138 1e-27 seq267 120 3e-22 >seq113 Length=382967 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||| ||||| || ||| ||||||||| ||||| ||||| || Sbjct 361741 CCTCCGCGCAGGCGCAGCACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 361800 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || |||||||||||||| || |||| |||||| ||||||| ||| Sbjct 361801 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGAGGA 361860 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||| ||| | | | |||||| ||||| || Sbjct 361861 ATGCCCTCCTTGTCCTGGATCTTGCTCTT-GACGTTGTCGATTGTGTCGGATGACTCTAC 361919 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| || || || || || |||||||| ||||| |||||||| Sbjct 361920 TTCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 361967 Score = 134 bits (148), Expect = 1e-26 Identities = 110/134 (82%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | ||||| || ||||| ||||||||| ||||| |||||||| Sbjct 361969 CCACCGCGGAGACGGAGGACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAA 362028 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || ||||| ||||||||||| |||| |||||| ||||||| |||| Sbjct 362029 AGGGTGCGGCCGTCCTCAAGCTGTTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGA 362088 Query 41756 ACGCTCTCCTTGTC 41769 | || ||||||||| Sbjct 362089 ATGCCCTCCTTGTC 362102 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| ||||| || ||||||||||||||| ||||||||| Sbjct 361513 CCTCCACGCAGGCGGAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAG 361572 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || |||||||| || || || || || ||||| ||||||| || Sbjct 361573 AGAGTGCGGCCATCCTCCAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGG 361632 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| || | || | || ||| | | | || ||| ||||| || Sbjct 361633 ATACCCTCCTTATCC-TGGATCTTCGATTTGACGTTGTCAATGGTATCGGATGACTCTAC 361691 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| || || || || || |||||||| ||||| |||||||| Sbjct 361692 TTCTAGCGTGATGGTCTTTCCAGTGAGCGTCTTGACGAAGATCTGCAT 361739 >seq53 Length=59568 Score = 138 bits (152), Expect = 1e-27 Identities = 117/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | |||| ||||| || ||||||||| ||||| |||||||| Sbjct 12406 GCCGCCACGGAGACGGAGGACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 12465 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || ||||| |||||||||||||| ||||||||||| ||||||| ||| Sbjct 12466 AAGGGTGCGGCCATCCTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 12525 Query 41755 AACGCTCTCCTTGTCCATGATTTT 41778 || || |||||||||| ||| || Sbjct 12526 AATGCCCTCCTTGTCCTGGATCTT 12549 >seq267 Length=290730 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||| ||||| || ||| ||||||||| ||||| ||||| || Sbjct 207170 CCACCACGCAGGCGGAGCACTAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 207229 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||||||||| || || ||||| ||||||| |||| Sbjct 207230 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGA 207289 Query 41756 ACGCTCTCCTTGTC 41769 | || ||||||||| Sbjct 207290 ATGCCCTCCTTGTC 207303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301278185200