Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq113 105 5e-18 >seq113 Length=395795 Score = 105 bits (116), Expect = 5e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 101672 TGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATA 101731 |||| ||||||||||||| ||||| |||||| || |||||||| || ||||| | Sbjct 68206 TGCACCTTAAGAGCATCAACATGATCAGCATAGACATGTGCATCTCCCATCGTATGTGTG 68147 Query 101732 AACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTA 101791 || ||| || || | || ||||| || | ||| |||| ||||| |||||| Sbjct 68146 AAAGTTCCCGGAACCAAGTTGCAAACATGCGCCAGCATATGTGTTAGAAGAGCATAGCTT 68087 Query 101792 GCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAA 101851 |||||||| ||||| || |||| ||||||||| || ||| ||||| |||||| | Sbjct 68086 GCAATGTTGAATGGAACACCTAGGCCCATATCACAACTTCGTTGGTACAGCTGACAGTGA 68027 Query 101852 AGCTTTCC 101859 ||| |||| Sbjct 68026 AGCCTTCC 68019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361247127457175