Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq411 197 2e-45 seq887 116 4e-21 >seq411 Length=256942 Score = 197 bits (218), Expect = 2e-45 Identities = 1189/1892 (63%), Gaps = 59/1892 (3%) Strand=Plus/Plus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||| || ||||| || || || | | || || ||||||||||| || || || || Sbjct 121118 GTGAACTGGATGGGTGCCGAAGCAGCCATTGTTCGGAGATAGTACATCCCAGTCTTGAGG 121177 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || | |||| || |||||||||||| || | ||| | ||||| || Sbjct 121178 CCCAACTTCCAACCTGCAAAATGCATACTGGTGATCTTGCCCATTGTAGGATCCTTCATG 121237 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 ||||| ||||| |||||| |||||| ||| | || || | || |||||||| | | | Sbjct 121238 TGGATGTTCATTGATTGAGATTGATCAATGTAAGCACCACGATCGGCAGCCATCTGGACG 121297 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047 || || || | |||||||| | || || || | ||| || || |||||| | Sbjct 121298 ATGGTACGCTGAGAGATTTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATG 121357 Query 53048 TTTGTA---TTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104 || | | || ||||| || ||||||||| | || || |||||||| || | || | Sbjct 121358 TTAGGAACATTTTGAATCGAACCACCATCTGCGATGATTCTATTCTTCATGTTGTCTGAC 121417 Query 53105 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 53164 |||| | | || | | | | | | || || || ||||| || |||||| Sbjct 121418 CATAGTCCCATATCAACAAGATCCTTCAACAACCATGGGTTGACGACTTGGAACTCTCCA 121477 Query 53165 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT--- 53221 | | || | |||| ||| || || ||| || || || | || |||| || Sbjct 121478 GCGAGCACACGACGAGAGTAGATGTTGGAGGTGTATGGCTCGA-AG---CATTCGTTGAA 121533 Query 53222 CCCAA-AATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAG 53280 ||||| ||||||| || ||||| |||||||| || || | ||||| || | | Sbjct 121534 CCCAAGAATTTGACTGGTACTGGCAGTGGGCATAGGAGCAACAAGCAAACTGTTGCGGAT 121593 Query 53281 ACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAAC 53340 ||| ||| |||||| | || |||| ||||||| ||| ||||| | || || Sbjct 121594 ACCATATTGCTTGATTTGTTGCTTCAGAGAATCCCAATCCCAGAGATCAGTTGGAGTGAC 121653 Query 53341 NNNNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTAT 53396 ||| || ||| || ||||| | |||| | ||||| | Sbjct 121654 ACCCCACATATCGTATTGAAGCTCACCCTTCGAGACTGGAG----ATCCCTCGTATGTCT 121709 Query 53397 CGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGG 53456 |||||||||| ||||| ||| || ||| || || || ||| || || | Sbjct 121710 CGTATGGTCCAAGCTTCTTAGCGAGATCAACGGAAGCAGTCAAAGCGGCGTGGTAGATAG 121769 Query 53457 TTTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTA-TCAAATGGATAATTTAA 53514 | || ||||||| | || |||| |||| || |||| | || ||||| | | Sbjct 121770 TCTCAAAGATCTGGATGTTGAGATGCTTGGCCT--CAGGTGACTCGAATGGCAGACGCA- 121826 Query 53515 GAGAATAAACG-CGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 53573 ||| | | | | || || | ||||||||||||| | | |||||||| || | | Sbjct 121827 GAGCCAAGAAGACATCAGCAAGACCTTGAACACCAAGAGCAATAGGTCTGTGACGGAAGT 121886 Query 53574 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTC 53633 | || | | |||||||||| || || || || | || || || || || ||||| Sbjct 121887 TGGATTTCTTTGCTTCTGGAACTGGGTAGTAGTTGACCTCGATGATCTTGTTCAGGTTCT 121946 Query 53634 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-------TTGTCCATCT 53686 |||| | || | | || || | || || | || ||| | |||| ||| | Sbjct 121947 TGACCACAACCTGGCAGACCTCGTGGAGCTTCTGGAAGTCATAGGTACCGTTGTTCATGT 122006 Query 53687 ATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 53746 || | || | || || ||||||| ||||| || ||||||| | | Sbjct 122007 CA-ACGTAGGTGGGAAGCGCCATGGATGCCAAGTTACAGCAAGCGACCTCATCTGGTGCG 122065 Query 53747 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 53806 | || | | ||||||||||| || || | ||||| || | ||| | || Sbjct 122066 GAGTACTCGACAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTGG 122125 Query 53807 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGG 53866 || |||||| ||| || |||||||| || || ||||| || | ||||| || | ||| Sbjct 122126 TTGCTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGG 122185 Query 53867 GATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTC- 53925 | ||| | ||| | | ||| | | ||||| || | ||| | ||| | Sbjct 122186 GCTTCGAGAATGGAGTACCAAAGTTTCTGTGCCTTGATGGTC---TTGCGACCCTTGCCC 122242 Query 53926 TCTTTCGTATAGT----GTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATC 53981 || | ||| | ||||| | | || || || || || | |||| | | | Sbjct 122243 TCAGCCTCATACTTCTCGTATAGAGCC--TCGAATTCATCACCATAGACATCTGCAAGAC 122300 Query 53982 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCA 54038 | || || || | || ||||||| | ||| | | ||| ||| || || |||| Sbjct 122301 CTGGGCACTCGTTGGGGCACATCAGTGTCCA---TGTGCCATTCTTTTCAACACGCTTCA 122357 Query 54039 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTC 54098 | || ||||| || ||||| ||||| || ||||| | | | | ||| || || | Sbjct 122358 TGAACAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCTTGC 122417 Query 54099 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 54158 | ||| ||| ||||| ||| || | | || ||| | ||||| || || | ||| | Sbjct 122418 CGTGATTTTTTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTAGA 122477 Query 54159 TGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 54218 ||| | | ||||| || |||||||| ||||| || | ||||| || ||||| || Sbjct 122478 TGGCGAATGCACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGTTGA 122537 Query 54219 AAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTC 54278 | ||||| | ||| |||| ||||| ||||| || || || || | || || || Sbjct 122538 ACACTCTGAGCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTC 122597 Query 54279 CACTGGCACGAATATT----ACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATT 54334 | |||| ||||| | || ||||| |||| || || || || | |||||||| Sbjct 122598 CGGTGGCTCGAATTCTGTGGAC--ATTGA--GACCGATACCACCAGCATTCTTAGAGATC 122653 Query 54335 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 54394 | || || || | ||| || ||||| || || |||||||||||| |||||| || | Sbjct 122654 ATGGCACAAGTCTTGAGCGTGTCGTAGATACCATCAATACTATCATCCTTCATGTCAATT 122713 Query 54395 AGAAAACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 54453 | || || ||| | || ||| | | || || ||| || | || || ||||| Sbjct 122714 AAGAAGCACGAAGAAAGTT-GTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGAAGC 122772 Query 54454 GTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCA 54513 ||| || || |||| | || | || || || ||||| || |||| || |||||| Sbjct 122773 GTGTGTGAAGTATTTGCCTGACATCAGGTTATATGTCTCAATTGCTGCCTCGATATCCTC 122832 Query 54514 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 54573 ||||| || ||||| |||||||| | ||||||||| || | ||| ||| ||| Sbjct 122833 GCCGTGAATGCCAACTGCTACACGCATGATCATGTGCTGCGGGCGTTCGCAGATTTTGCC 122892 Query 54574 GTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 54633 | | || | ||| ||| ||| | || || ||||| || || | ||| || Sbjct 122893 ATCGAGGCGGAGAAGGTATGATCGTTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAA 122952 Query 54634 GTCTCGTTCGTAAATAATAACTGAGTTGAGTT 54665 |||||| ||||| | |||| | || ||||||| Sbjct 122953 GTCTCGATCGTAGACAATAGCCGAATTGAGTT 122984 >seq887 Length=503426 Score = 116 bits (128), Expect = 4e-21 Identities = 292/439 (67%), Gaps = 6/439 (1%) Strand=Plus/Minus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 |||||||| ||||| ||||| || || || || || || || || | | || || || Sbjct 202506 TTTTGGTAATCACCAACACGCTTCTCAAAGAAGTTTGTCTTGCCGGCAAGAGAGATGTTC 202447 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATT-CAGAAAT 23962 |||||||| ||| |||| |||| | || |||| | || | | |||| || | Sbjct 202446 TCCATGAAGTCGAATGGGTTGGCAGATTTGTAGACT-TTGTCGTTGCCAAGGGCAAGGAG 202388 Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 24022 | | ||| || |||||||| || ||| ||||||| | | ||||| || | ||| Sbjct 202387 AAGACGATCAGCAACAAACTCAATGTATTGCTTCATCAGGTTGGAGTTCATGCCGAGAAG 202328 Query 24023 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 24082 | ||||||||| | || | ||| || || || || || || || || || | Sbjct 202327 AGCACAAGGAAGAGCCTCGGTCAAAAACTCCTGCTCGATTTCAACAGCCTCAGTGATGAC 202268 Query 24083 AGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 24140 | |||| |||| || | || || ||| | || || || | | || || Sbjct 202267 A--TCTTGAACTGCTTGCTTGCTTGGGCGATGCTTCAAGTGAGAGAAGAGGAGGCAAGCA 202210 Query 24141 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 24200 || || ||| ||||||||||| | | |||||| |||||||| || || ||||||| | Sbjct 202209 AAGTCAGTGTGAAGACCCTCGTCACGAGAAATTAACTCGTTGGAGAAGGTAAGTCCGGCC 202150 Query 24201 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 24260 || ||||||||||| || | ||| || || || || ||||| ||| ||||| || || Sbjct 202149 ATGAGGCCACGCTTCTTCAACCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATACCC 202090 Query 24261 TCTACTGCCGCAAAGGCAA 24279 || || || || || |||| Sbjct 202089 TCAACGGCGGCGAATGCAA 202071 Score = 84.2 bits (92), Expect = 3e-11 Identities = 196/294 (67%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 || |||| |||||||| ||||| || || | || || || ||||| || || Sbjct 201903 TCCTTAATGTATGTATCGATCAACAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATG 201844 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCT 24515 ||||| ||||||||||| || | ||||| | ||| || |||||| || || || || Sbjct 201843 ATTTGGAATCCGTAGAAGCACCGTGCCTCTGGAATTTGGACTTCTCCACTGAAGCGCTCG 201784 Query 24516 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 24575 | || || || || || || || || ||| || || || || | || || || Sbjct 201783 ACCAAGTTCTCGTTAACAATACCATCGGAGGCGGCGAAGAAGGCAAGAACGTGAGAAATG 201724 Query 24576 AAATATTTTTCGTC----TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATC 24631 || ||| ||||| | | ||| | || ||||| |||| | || || || | || Sbjct 201723 AAGTATCGCTCGTCATCATTGAGTTTG-TTGTTCCAGTCATGAAGGTCCTTGGACAGGTC 201665 Query 24632 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 | || || | ||||| ||||||||||| ||||| || ||||| | |||||| Sbjct 201664 AATCTCCTCTGCGGTCCAGAATGATGCCTCGGCCTTCTTGTACATCTGCCAGAT 201611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593714735094000