Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq112 86.0 5e-12 seq61 82.4 6e-11 >seq112 Length=719005 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| ||| | ||||||||||| || ||||| ||||| | Sbjct 202120 CCACCACGCAGACGAAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAT 202179 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | | ||||| || || ||||| || |||| |||| ||||||||| || Sbjct 202180 AAGGTGCGCCCATCCTCAAGTTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGG 202239 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || ||||| || ||||| || || | | ||| |||||| | ||| Sbjct 202240 ATACCCTCCTTATCTTGAATCTTCGACTTTACATTGTCGATGGTATCAGATGACTCAACC 202299 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||||||||| || | || ||||| || || ||||| Sbjct 202300 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 202346 Score = 82.4 bits (90), Expect = 6e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| ||| | ||||||||||||||| ||||| || || | Sbjct 202629 CCACCACGGAGGCGGAGAACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAG 202688 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||| ||||| || || || |||| | | ||||| ||| || Sbjct 202689 AGGGTGCGACCGTCCTCGAGCTGCTTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGGA 202748 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCA 21116 | |||||||||||| ||||| ||| || | | ||| ||| ||| Sbjct 202749 ATGCCTTCCTTGTCTTGAATCTTGGATTTGACATTGTCGATAGTGTCA 202796 >seq61 Length=91600 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || ||||| | || || | ||| | ||| |||||||| || ||||| ||||| | Sbjct 26018 TCCTCCACGCAGACGCAGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGA 25959 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 ||||| || |||| || || || ||||| || | || || | |||||||| || Sbjct 25958 GAGGGTGCGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGG 25899 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | |||||||||||| ||||| || || | | ||| || || | ||| Sbjct 25898 AATGCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAAC 25839 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||| ||||| || | || |||||||| || ||||| Sbjct 25838 CTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 25791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422254439687300