Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq887 150 2e-31 seq61 149 6e-31 seq112 107 2e-18 seq190 102 8e-17 >seq887 Length=503426 Score = 150 bits (166), Expect = 2e-31 Identities = 188/257 (73%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| |||||| | |||||| Sbjct 201611 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCATTCTGGACCGCAGAGGAGATTGACCTG 201670 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| |||||| | | | || || ||||||| | ||||| Sbjct 201671 TCCAAGGACCTTCATGACTGGAACAACAAACTCAATGATGACGAGCGATACTTCATTTCT 201730 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || ||||| ||||||||| ||| || || || |||||||| |||||||||| Sbjct 201731 CACGTTCTTGCCTTCTTCGCCGCCTCCGATGGTATTGTTAACGAGAACTTGGTCGAGCGC 201790 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | || || || | | ||||| |||||||||||||| || || ||| ||| Sbjct 201791 TTCAGTGGAGAAGTCCAAATTCCAGAGGCACGGTGCTTCTACGGATTCCAAATCATGATG 201850 Query 116873 GAGAACGTGCACTCGGA 116889 |||||| | ||||| || Sbjct 201851 GAGAACATCCACTCCGA 201867 Score = 118 bits (130), Expect = 1e-21 Identities = 311/468 (66%), Gaps = 5/468 (1%) Strand=Plus/Plus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028 || ||| | || |||||||||| ||||| | || |||||| | || || | Sbjct 201995 CCCTGCATTAAGAAGAAGGCCGACTGGGCTGTACGATGGATCCAAGACAAGTCATCCACA 202054 Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 || | ||||| |||| || ||||| ||||| ||||| ||||||| || ||| Sbjct 202055 TTTGCTCAGCGCTTGGTTGCATTCGCCGCCGTTGAGGGTATCTTCTTCAGTGGTTCATTC 202114 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 ||| | || || ||| | ||||| || ||||||||| |||| || || ||| ||||||| Sbjct 202115 GCCTCTATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCCGGACTTACCTTCTCCAACGAG 202174 Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 | || || | ||||||||||| || |||||||| || | || ||| || ||| Sbjct 202175 TTAATTTCTCGTGACGAGGGTCTTCACACTGACTTTGCTTGCCTCCTCTTCTCTCACTTG 202234 Query 117209 GTGCAGCGACCGAGCGCGGCGCGC-GTCAGGGAGATCGTCACCGACGCGGTCGCCATCGA 117267 ||| || || ||| || || || || || |||| || || || | ||||| Sbjct 202235 AAGCATCGCCCAAGC-AAGCAAGCAGTTCAAGATGTCATCACTGAGGCTGTTGAAATCGA 202293 Query 117268 GCAGCGCTTCCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGA 117326 |||| || | ||||| || || || |||| ||| || || | || | | | || Sbjct 202294 GCAGGAGTTTTTGACCGAGGCTCTTCCTTGTGC-TCTTCTCGGCATGAACTCCAACCTGA 202352 Query 117327 TGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGC 117386 || ||||||||| ||||| || || || | || || || | || | | || ||| Sbjct 202353 TGAAGCAATACATTGAGTTTGTTGCTGATCGTCTTCTCCTTGCCCTTGGCAACGACAAAG 202412 Query 117387 ACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTC-CTTG 117433 |||||| | ||||||| | ||||| ||| | |||||| |||| Sbjct 202413 TCTACAAATCTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTG 202460 >seq61 Length=91600 Score = 149 bits (164), Expect = 6e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||||||||||||||||||| |||| || || | | Sbjct 25791 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCG 25850 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || |||| ||||| || ||||| || | |||||| Sbjct 25851 GACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGCATTCCACCTGACCAG 25910 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| ||| ||||| || || || |||| ||||||||| |||||||||| Sbjct 25911 CAACGTCTAATCTTCGCTGGCAAGCAACTTGAAGACGGCCGCACCCTCTCCGACTACAAC 25970 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || || ||||| || |||| Sbjct 25971 ATCCAGAAGGAGTCAACTCTTCATCTCGTCCTGCG 26005 >seq112 Length=719005 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| |||||||| | || || || | | Sbjct 202346 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTTGAGTCATCT 202287 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | ||| || |||| || || ||||| ||||| | |||||| Sbjct 202286 GATACCATCGACAATGTAAAGTCGAAGATTCAAGATAAGGAGGGTATCCCACCAGACCAG 202227 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||| | ||| ||||| || || || || | ||||||| | ||||||||| Sbjct 202226 CAGCGACTCATTTTCGCCGGCAAGCAACTTGAGGATGGGCGCACCTTATCTGACTACAAC 202167 Query 40870 ATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||||||| |||| || ||| Sbjct 202166 ATCCAGAAGGAGTCCACACTCCAT 202143 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 ||| |||| || || ||||| || || | |||||||| ||| | |||| ||| ||||| Sbjct 202035 AAAGATTCAGGATAAGGAGGGTATTCCACCAGACCAGCAGCGATTGATCTTCGCTGGCAA 201976 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||| |||| || | || || | | ||||||||||||||| |||||| ||| ||||| Sbjct 201975 GCAGTTGGAGGATGGCCGTACGTTGAGCGACTACAACATCCAAAAGGAGAGCACACTGCA 201916 Query 40893 TCTAGTGTTGCG 40904 | |||||||| Sbjct 201915 CTTGGTGTTGCG 201904 Score = 86.0 bits (94), Expect = 6e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| || ||||| || |||| |||||||| | || | ||| || || Sbjct 202771 AAGATTCAAGACAAGGAAGGCATTCCTCCGGATCAGCAACGTTTGATTTTCGCCGGAAAG 202712 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || |||| ||||||||| || ||||||||||| |||||| |||| || ||| Sbjct 202711 CAGCTCGAGGACGGTCGCACCCTCTCTGATTACAACATCCAAAAGGAGTCCACTCTTCAT 202652 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/132 (74%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| ||||| || |||| || || ||||| || || | ||||||||||| || || Sbjct 202502 AACG-TCAAGTCGAAGATTCAAGATAAGGAGGGTATTCCACCAGACCAGCAACGTCTTAT 202444 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || || || || ||||| || |||| || ||||| |||||||||||| |||||||| Sbjct 202443 CTTTGCTGGTAAGCAGCTCGAAGACGGTCGTACCCTTTCCGACTACAACATTCAGAAGGA 202384 Query 40881 GGCCACGCTGCA 40892 | | || || || Sbjct 202383 GTCGACCCTTCA 202372 >seq190 Length=335796 Score = 102 bits (112), Expect = 8e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| |||||||| | || || || || | || | | Sbjct 147803 TTCGTCAAGACCCTTACGGGCAAGACCATCACGCTTGAGGTTGAGTCCTCGGATACAATC 147744 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || |||| ||||| ||||| ||||| ||||||||||||| | Sbjct 147743 GACAATGTCAAGTCCAAGATTCAAGACAAGGAGGGAATCCCACCGGACCAGCAACGTTTG 147684 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| || || || || | ||||| ||| ||| ||||||||||||||| Sbjct 147683 ATCTTCGCCGGCAAGCAACTCGAGGATGGACGCACTCTCTCCGATTACAACATCCAGAAG 147624 Query 40879 G 40879 | Sbjct 147623 G 147623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515213242778000