Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq887 150 2e-31
seq61 149 6e-31
seq112 107 2e-18
seq190 102 8e-17
>seq887
Length=503426
Score = 150 bits (166), Expect = 2e-31
Identities = 188/257 (73%), Gaps = 3/257 (1%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || |||||||||| |||||| | ||||||
Sbjct 201611 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCATTCTGGACCGCAGAGGAGATTGACCTG 201670
Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752
||||||||| |||||| | | | || || ||||||| | |||||
Sbjct 201671 TCCAAGGACCTTCATGACTGGAACAACAAACTCAATGATGACGAGCGATACTTCATTTCT 201730
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||||| || ||||| ||||||||| ||| || || || |||||||| ||||||||||
Sbjct 201731 CACGTTCTTGCCTTCTTCGCCGCCTCCGATGGTATTGTTAACGAGAACTTGGTCGAGCGC 201790
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| | || || || | | ||||| |||||||||||||| || || ||| |||
Sbjct 201791 TTCAGTGGAGAAGTCCAAATTCCAGAGGCACGGTGCTTCTACGGATTCCAAATCATGATG 201850
Query 116873 GAGAACGTGCACTCGGA 116889
|||||| | ||||| ||
Sbjct 201851 GAGAACATCCACTCCGA 201867
Score = 118 bits (130), Expect = 1e-21
Identities = 311/468 (66%), Gaps = 5/468 (1%)
Strand=Plus/Plus
Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028
|| ||| | || |||||||||| ||||| | || |||||| | || || |
Sbjct 201995 CCCTGCATTAAGAAGAAGGCCGACTGGGCTGTACGATGGATCCAAGACAAGTCATCCACA 202054
Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088
|| | ||||| |||| || ||||| ||||| ||||| ||||||| || |||
Sbjct 202055 TTTGCTCAGCGCTTGGTTGCATTCGCCGCCGTTGAGGGTATCTTCTTCAGTGGTTCATTC 202114
Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148
||| | || || ||| | ||||| || ||||||||| |||| || || ||| |||||||
Sbjct 202115 GCCTCTATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCCGGACTTACCTTCTCCAACGAG 202174
Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208
| || || | ||||||||||| || |||||||| || | || ||| || |||
Sbjct 202175 TTAATTTCTCGTGACGAGGGTCTTCACACTGACTTTGCTTGCCTCCTCTTCTCTCACTTG 202234
Query 117209 GTGCAGCGACCGAGCGCGGCGCGC-GTCAGGGAGATCGTCACCGACGCGGTCGCCATCGA 117267
||| || || ||| || || || || || |||| || || || | |||||
Sbjct 202235 AAGCATCGCCCAAGC-AAGCAAGCAGTTCAAGATGTCATCACTGAGGCTGTTGAAATCGA 202293
Query 117268 GCAGCGCTTCCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGA 117326
|||| || | ||||| || || || |||| ||| || || | || | | | ||
Sbjct 202294 GCAGGAGTTTTTGACCGAGGCTCTTCCTTGTGC-TCTTCTCGGCATGAACTCCAACCTGA 202352
Query 117327 TGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGC 117386
|| ||||||||| ||||| || || || | || || || | || | | || |||
Sbjct 202353 TGAAGCAATACATTGAGTTTGTTGCTGATCGTCTTCTCCTTGCCCTTGGCAACGACAAAG 202412
Query 117387 ACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTC-CTTG 117433
|||||| | ||||||| | ||||| ||| | |||||| ||||
Sbjct 202413 TCTACAAATCTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTG 202460
>seq61
Length=91600
Score = 149 bits (164), Expect = 6e-31
Identities = 162/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || ||||||||||||||||||||| |||| || || | |
Sbjct 25791 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCG 25850
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || |||| ||||| || ||||| || | ||||||
Sbjct 25851 GACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGCATTCCACCTGACCAG 25910
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| || |||| ||| ||||| || || || |||| ||||||||| ||||||||||
Sbjct 25911 CAACGTCTAATCTTCGCTGGCAAGCAACTTGAAGACGGCCGCACCCTCTCCGACTACAAC 25970
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||||||||||| | || || ||||| || ||||
Sbjct 25971 ATCCAGAAGGAGTCAACTCTTCATCTCGTCCTGCG 26005
>seq112
Length=719005
Score = 107 bits (118), Expect = 2e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| |||||||| | || || || | |
Sbjct 202346 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTTGAGTCATCT 202287
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | | ||| || |||| || || ||||| ||||| | ||||||
Sbjct 202286 GATACCATCGACAATGTAAAGTCGAAGATTCAAGATAAGGAGGGTATCCCACCAGACCAG 202227
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| |||||||| | ||| ||||| || || || || | ||||||| | |||||||||
Sbjct 202226 CAGCGACTCATTTTCGCCGGCAAGCAACTTGAGGATGGGCGCACCTTATCTGACTACAAC 202167
Query 40870 ATCCAGAAGGAGGCCACGCTGCAT 40893
|||||||||||| |||| || |||
Sbjct 202166 ATCCAGAAGGAGTCCACACTCCAT 202143
Score = 89.7 bits (98), Expect = 5e-13
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832
||| |||| || || ||||| || || | |||||||| ||| | |||| ||| |||||
Sbjct 202035 AAAGATTCAGGATAAGGAGGGTATTCCACCAGACCAGCAGCGATTGATCTTCGCTGGCAA 201976
Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
||| |||| || | || || | | ||||||||||||||| |||||| ||| |||||
Sbjct 201975 GCAGTTGGAGGATGGCCGTACGTTGAGCGACTACAACATCCAAAAGGAGAGCACACTGCA 201916
Query 40893 TCTAGTGTTGCG 40904
| ||||||||
Sbjct 201915 CTTGGTGTTGCG 201904
Score = 86.0 bits (94), Expect = 6e-12
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833
|| |||| ||||| || ||||| || |||| |||||||| | || | ||| || ||
Sbjct 202771 AAGATTCAAGACAAGGAAGGCATTCCTCCGGATCAGCAACGTTTGATTTTCGCCGGAAAG 202712
Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893
||||| || |||| ||||||||| || ||||||||||| |||||| |||| || |||
Sbjct 202711 CAGCTCGAGGACGGTCGCACCCTCTCTGATTACAACATCCAAAAGGAGTCCACTCTTCAT 202652
Score = 82.4 bits (90), Expect = 8e-11
Identities = 98/132 (74%), Gaps = 1/132 (1%)
Strand=Plus/Minus
Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820
|||| ||||| || |||| || || ||||| || || | ||||||||||| || ||
Sbjct 202502 AACG-TCAAGTCGAAGATTCAAGATAAGGAGGGTATTCCACCAGACCAGCAACGTCTTAT 202444
Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880
|| || || || ||||| || |||| || ||||| |||||||||||| ||||||||
Sbjct 202443 CTTTGCTGGTAAGCAGCTCGAAGACGGTCGTACCCTTTCCGACTACAACATTCAGAAGGA 202384
Query 40881 GGCCACGCTGCA 40892
| | || || ||
Sbjct 202383 GTCGACCCTTCA 202372
>seq190
Length=335796
Score = 102 bits (112), Expect = 8e-17
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || |||||||| |||||||| | || || || || | || | |
Sbjct 147803 TTCGTCAAGACCCTTACGGGCAAGACCATCACGCTTGAGGTTGAGTCCTCGGATACAATC 147744
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || |||| ||||| ||||| ||||| ||||||||||||| |
Sbjct 147743 GACAATGTCAAGTCCAAGATTCAAGACAAGGAGGGAATCCCACCGGACCAGCAACGTTTG 147684
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| || || || || | ||||| ||| ||| |||||||||||||||
Sbjct 147683 ATCTTCGCCGGCAAGCAACTCGAGGATGGACGCACTCTCTCCGATTACAACATCCAGAAG 147624
Query 40879 G 40879
|
Sbjct 147623 G 147623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515213242778000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |