Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq112 114 1e-20 seq190 84.2 2e-11 >seq112 Length=719005 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||||||| | ||| ||| ||||| |||||||| ||||||| || || ||| Sbjct 201906 CAACACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAACGTACGGCCATC 201965 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| | ||| || |||||| |||| | |||||||| || || || || |||||||| || Sbjct 201966 CTCCAACTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGAATACCCTCCTTATC 202025 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| ||| ||||| | || | ||||| | ||| ||||| | || | || Sbjct 202026 CTGAATCTTTGACTTAACATTATCAATTGTGTCGGATGACTCAACCTCTAATGTAATAGT 202085 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||| ||| || ||||| |||||||| Sbjct 202086 CTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 202118 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || ||||| ||||| ||||||||||| | ||||| |||||| Sbjct 202647 ACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGACCGTCCTCG 202706 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| ||| | || | ||| |||||||| ||||| ||||| ||||||||| | Sbjct 202707 AGCTGCTTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCTTGA 202766 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTC 118678 || || ||| || | |||| ||||| Sbjct 202767 ATCTTGGATTTGACATTGTCGATAGTGTC 202795 >seq190 Length=335796 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||||||| | |||||| ||||||||| || || || ||| |||| Sbjct 147625 TTCTGGATGTTGTAATCGGAGAGAGTGCGTCCATCCTCGAGTTGCTTGCCGGCGAAGATC 147684 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | ||| ||||| || || || || |||||||||||| ||| || || || | ||| Sbjct 147685 AAACGTTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATCTTGGACTTGACATTGTCG 147744 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | || |||| | ||| ||||| | || | || ||||| || || || || || || Sbjct 147745 ATTGTATCCGAGGACTCAACCTCAAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 147803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433825509240100