Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq112 105 8e-18 seq61 100 3e-16 >seq112 Length=719005 Score = 105 bits (116), Expect = 8e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||||||||| |||| ||||||||||||||| || ||||| || || || || | Sbjct 201903 ACGCAACACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAACGTACGGCC 201962 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | |||||| |||||||| || | |||||||||||| | || | | |||||| Sbjct 201963 ATCCTCCAACTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGAATACCCTCCTT 202022 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 ||| ||| | |||| || | | | | |||||| || || || || | || | Sbjct 202023 ATCC-TGAATCTTTGACTTAACATTATCAATTGTGTCGGATGACTCAACCTCTAATGTAA 202081 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || || | ||||| |||||||| ||||| Sbjct 202082 TAGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 202118 >seq61 Length=91600 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | | ||||| || | ||| | || |||||| || || ||||| || | Sbjct 26018 TCCTCCACGCAGACGCAGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGA 25959 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || |||| || || ||||| |||||||| || || || |||||||| | || Sbjct 25958 GAGGGTGCGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGG 25899 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | || |||||||| ||| | || | |||| | | | ||||| || || | Sbjct 25898 AATGCCTTCCTTGTCT-TGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAA 25840 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | |||| ||||||||||||||||| || ||||| |||||||| ||||| Sbjct 25839 CCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 25791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571810988359000