Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq411 277 2e-69 seq887 131 1e-25 seq61 114 1e-20 >seq411 Length=256942 Score = 277 bits (306), Expect = 2e-69 Identities = 619/919 (67%), Gaps = 14/919 (2%) Strand=Plus/Plus Query 23065 GTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTT 23124 |||||| ||||| || || || || ||| | || || || | ||| ||||||| Sbjct 122068 GTACTCGACAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTGGTT 122127 Query 23125 GCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGA 23184 ||| ||||| ||||| | |||||||||||||||| | || | || |||||| || | Sbjct 122128 GCTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGGGC 122187 Query 23185 CTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTT 23243 |||| || | ||| | |||| || | | ||| || ||| ||| || Sbjct 122188 TTCGAGAATGGAGTACCAAAGTTTCTGTGCCTTGATG-GTCTTGCGACCCTTGCCCTCAG 122246 Query 23244 CCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGC 23302 |||| ||||| | ||| | || || ||||| |||| || ||| || || || || || Sbjct 122247 CCTCATACTTCTCGTATAGAGCCTCGAATTCATCACCATAGACA-TCTGCAAGACCTGGG 122305 Query 23303 GATTGCATCGGACACATGAGACTCCACATTGAGTCATT---TTCAACGCGTCTCATAAAA 23359 | | | || ||||| || |||| || | |||| |||||| || |||| || Sbjct 122306 CACTCGTTGGGGCACATCAGTGTCCA---TGTGCCATTCTTTTCAACACGCTTCATGAAC 122362 Query 23360 AGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTG 23419 ||||| || ||||| ||||||||||| || || || ||||| || || || ||||| ||| Sbjct 122363 AGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCTTGCC-GTG 122421 Query 23420 TTCTTTTTC--AAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGG 23477 | |||||| | ||| | | || || || || || ||||| ||||||||||| | || Sbjct 122422 AT-TTTTTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTAGATGG 122480 Query 23478 CAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACA 23537 | || || || |||| ||| || || ||||| || || || | ||| ||||||||| ||| Sbjct 122481 CGAATGCACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAACA 122540 Query 23538 CTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTT 23597 |||| ||||| || |||| ||||||||| |||| | ||| || | | || Sbjct 122541 CTCTGAGCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTCCGG 122600 Query 23598 TTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGC 23657 | ||||||| |||| || | || ||| || || || | || || ||||| || | Sbjct 122601 TGGCTCGAATTCTGTGGACATTGAGACCGATACCACCAGCATTCTTAGAGATCATGGCAC 122660 Query 23658 ATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAAC 23717 | || || ||||||||||| || || || || || || || | | | ||||| | Sbjct 122661 AAGTCTTGAGCGTGTCGTAGATACCATCAATACTATCATCCTTCATGTCAATTAAGAAGC 122720 Query 23718 ACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAA 23777 ||||||| | ||| || | || || |||| | ||| ||||| || ||||| || | Sbjct 122721 ACGAAGAAAGTTGTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGAAGCGTGTGTGA 122780 Query 23778 AGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTA 23837 ||||| ||||| || || || || || || || || || || ||||| ||||| | Sbjct 122781 AGTATTTGCCTGACATCAGGTTATATGTCTCAATTGCTGCCTCGATATCCTCGCCGTGAA 122840 Query 23838 TACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTT 23897 | || | || || ||||| ||||||| || || | ||| | ||| | | Sbjct 122841 TGCCAACTGCTACACGCATGATCATGTGCTGCGGGCGTTCGCAGATTTTGCCATCGAGGC 122900 Query 23898 TGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGAT 23957 || || ||||| |||| | || || || || || || | ||||| ||||| |||| Sbjct 122901 GGAGAAGGTATGATCGTTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAGTCTCGAT 122960 Query 23958 CGTGCACTATGGCCGAATT 23976 ||| || || |||||||| Sbjct 122961 CGTAGACAATAGCCGAATT 122979 >seq887 Length=503426 Score = 131 bits (144), Expect = 1e-25 Identities = 205/293 (70%), Gaps = 3/293 (1%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || ||||| || ||||||| || || | |||||| Sbjct 201611 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCATTCTGGACCGCAGAGGAGATTGACCTG 201670 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || ||||| || || ||| | | ||||| || ||| || | || ||| Sbjct 201671 TCCAAGGACCTTCATGACTGGAACAACAAACTCAATGATGACGAGCGATACTTCATTTCT 201730 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || |||||||| ||||||||||||||||||||||| |||||||| | Sbjct 201731 CACGTTCTTGCCTTCTTCGCCGCCTCCGATGGTATTGTTAACGAGAACTTGGTCGAGCGC 201790 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || |||||| ||| | | ||||| | ||||| |||||||| ||| | || Sbjct 201791 TTCAGTGGAGAAGTCCAAATTCCAGAGGCACGGTGCTTCTACGGATTCCAAATCATGATG 201850 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 || ||| | || || || | || || || | |||||||| ||| | ||||| Sbjct 201851 GAGAACATCCACTCCGAGACATACTCCCTGTTGATCGATACATACATTAAGGA 201903 Score = 113 bits (124), Expect = 4e-20 Identities = 308/464 (66%), Gaps = 11/464 (2%) Strand=Plus/Plus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || ||||||||||| || ||||| ||||| || || || | || || ||| || Sbjct 202073 GCATTCGCCGCCGTTGAGGGTATCTTCTTCAGTGGTTCATTCGCCTCTATCTTCTGGTTG 202132 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 ||||| || ||||| ||| |||| || || || ||||||||| || || || |||||| Sbjct 202133 AAGAAGCGTGGCCTCATGGCCGGACTTACCTTCTCCAACGAGTTAATTTCTCGTGACGAG 202192 Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAA--ACCGACGC 58158 ||||| || ||||| ||||| ||||| | | ||||||| ||| || | || | || Sbjct 202193 GGTCTTCACACTGACTTTGCTTGCCTCCTCTTCTCTCAC-TTG--AAGCATCGCCCAAGC 202249 Query 58159 GGGATCGCA-TCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACC 58217 | ||| | || | ||||| ||||| || | ||||| | |||||| | ||| Sbjct 202250 AAGCAAGCAGTTCAAGATGTCATCACTGAGGCTGTTGAAATCGAGCAGGAGTTTTTGACC 202309 Query 58218 GAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAG 58277 || || || || || | ||||| |||||| | ||||| | ||||||||| Sbjct 202310 GAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACTCCAACCTGATGAAGCAATACATTGAG 202369 Query 58278 TTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAAAA 58335 |||||||| || | ||| | || | || | || | ||| ||||| | | Sbjct 202370 TTTGTTGCTGATCGTCTTCTCCTTGCCCTTGGCAACGACAAAGTC--TACAAATCTGCCA 202427 Query 58336 ATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaa 58395 | || || || || ||| | ||||| || | |||||||||||||| || || || Sbjct 202428 ACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGCAAGACAAACTTCTTTGAGAAGC 202487 Query 58396 aaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGTA-ACAA 58438 ||| | || || ||||| || || ||| ||||| |||| Sbjct 202488 GTGTTGGTGATTACCAAAAGGCTGGTGTCATGGCCGGTACACAA 202531 >seq61 Length=91600 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| || || |||||||| |||||| |||| ||||| | || Sbjct 25790 CATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTC 25849 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || |||||||||||| | || || ||||| Sbjct 25850 GGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGCATTCCACCTGACCA 25909 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| |||||||| ||||||||||| || | |||||| || | ||| || || Sbjct 25910 GCAACGTCTAATCTTCGCTGGCAAGCAACTTGAAGACGGCCGCACCCTCTCCGACTACAA 25969 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || ||||||||||| || || Sbjct 25970 CATCCAGAAGGAGTCAACTCTTCATCTCGTCCT 26002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445761245826000