Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq411 277 2e-69
seq887 131 1e-25
seq61 114 1e-20
>seq411
Length=256942
Score = 277 bits (306), Expect = 2e-69
Identities = 619/919 (67%), Gaps = 14/919 (2%)
Strand=Plus/Plus
Query 23065 GTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTT 23124
|||||| ||||| || || || || ||| | || || || | ||| |||||||
Sbjct 122068 GTACTCGACAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTGGTT 122127
Query 23125 GCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGA 23184
||| ||||| ||||| | |||||||||||||||| | || | || |||||| || |
Sbjct 122128 GCTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGGGC 122187
Query 23185 CTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTT 23243
|||| || | ||| | |||| || | | ||| || ||| ||| ||
Sbjct 122188 TTCGAGAATGGAGTACCAAAGTTTCTGTGCCTTGATG-GTCTTGCGACCCTTGCCCTCAG 122246
Query 23244 CCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGC 23302
|||| ||||| | ||| | || || ||||| |||| || ||| || || || || ||
Sbjct 122247 CCTCATACTTCTCGTATAGAGCCTCGAATTCATCACCATAGACA-TCTGCAAGACCTGGG 122305
Query 23303 GATTGCATCGGACACATGAGACTCCACATTGAGTCATT---TTCAACGCGTCTCATAAAA 23359
| | | || ||||| || |||| || | |||| |||||| || |||| ||
Sbjct 122306 CACTCGTTGGGGCACATCAGTGTCCA---TGTGCCATTCTTTTCAACACGCTTCATGAAC 122362
Query 23360 AGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTG 23419
||||| || ||||| ||||||||||| || || || ||||| || || || ||||| |||
Sbjct 122363 AGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCTTGCC-GTG 122421
Query 23420 TTCTTTTTC--AAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGG 23477
| |||||| | ||| | | || || || || || ||||| ||||||||||| | ||
Sbjct 122422 AT-TTTTTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTAGATGG 122480
Query 23478 CAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACA 23537
| || || || |||| ||| || || ||||| || || || | ||| ||||||||| |||
Sbjct 122481 CGAATGCACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAACA 122540
Query 23538 CTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTT 23597
|||| ||||| || |||| ||||||||| |||| | ||| || | | ||
Sbjct 122541 CTCTGAGCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTCCGG 122600
Query 23598 TTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGC 23657
| ||||||| |||| || | || ||| || || || | || || ||||| || |
Sbjct 122601 TGGCTCGAATTCTGTGGACATTGAGACCGATACCACCAGCATTCTTAGAGATCATGGCAC 122660
Query 23658 ATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAAC 23717
| || || ||||||||||| || || || || || || || | | | ||||| |
Sbjct 122661 AAGTCTTGAGCGTGTCGTAGATACCATCAATACTATCATCCTTCATGTCAATTAAGAAGC 122720
Query 23718 ACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAA 23777
||||||| | ||| || | || || |||| | ||| ||||| || ||||| || |
Sbjct 122721 ACGAAGAAAGTTGTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGAAGCGTGTGTGA 122780
Query 23778 AGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTA 23837
||||| ||||| || || || || || || || || || || ||||| ||||| |
Sbjct 122781 AGTATTTGCCTGACATCAGGTTATATGTCTCAATTGCTGCCTCGATATCCTCGCCGTGAA 122840
Query 23838 TACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTT 23897
| || | || || ||||| ||||||| || || | ||| | ||| | |
Sbjct 122841 TGCCAACTGCTACACGCATGATCATGTGCTGCGGGCGTTCGCAGATTTTGCCATCGAGGC 122900
Query 23898 TGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGAT 23957
|| || ||||| |||| | || || || || || || | ||||| ||||| ||||
Sbjct 122901 GGAGAAGGTATGATCGTTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAGTCTCGAT 122960
Query 23958 CGTGCACTATGGCCGAATT 23976
||| || || ||||||||
Sbjct 122961 CGTAGACAATAGCCGAATT 122979
>seq887
Length=503426
Score = 131 bits (144), Expect = 1e-25
Identities = 205/293 (70%), Gaps = 3/293 (1%)
Strand=Plus/Plus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | |||||||| ||||| || ||||| || ||||||| || || | ||||||
Sbjct 201611 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCATTCTGGACCGCAGAGGAGATTGACCTG 201670
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|| ||||| || || ||| | | ||||| || ||| || | || |||
Sbjct 201671 TCCAAGGACCTTCATGACTGGAACAACAAACTCAATGATGACGAGCGATACTTCATTTCT 201730
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||||| | || || |||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 201731 CACGTTCTTGCCTTCTTCGCCGCCTCCGATGGTATTGTTAACGAGAACTTGGTCGAGCGC 201790
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
|| |||||| ||| | | ||||| | ||||| |||||||| ||| | ||
Sbjct 201791 TTCAGTGGAGAAGTCCAAATTCCAGAGGCACGGTGCTTCTACGGATTCCAAATCATGATG 201850
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859
|| ||| | || || || | || || || | |||||||| ||| | |||||
Sbjct 201851 GAGAACATCCACTCCGAGACATACTCCCTGTTGATCGATACATACATTAAGGA 201903
Score = 113 bits (124), Expect = 4e-20
Identities = 308/464 (66%), Gaps = 11/464 (2%)
Strand=Plus/Plus
Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040
|| ||||||||||| || ||||| ||||| || || || | || || ||| ||
Sbjct 202073 GCATTCGCCGCCGTTGAGGGTATCTTCTTCAGTGGTTCATTCGCCTCTATCTTCTGGTTG 202132
Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100
||||| || ||||| ||| |||| || || || ||||||||| || || || ||||||
Sbjct 202133 AAGAAGCGTGGCCTCATGGCCGGACTTACCTTCTCCAACGAGTTAATTTCTCGTGACGAG 202192
Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAA--ACCGACGC 58158
||||| || ||||| ||||| ||||| | | ||||||| ||| || | || | ||
Sbjct 202193 GGTCTTCACACTGACTTTGCTTGCCTCCTCTTCTCTCAC-TTG--AAGCATCGCCCAAGC 202249
Query 58159 GGGATCGCA-TCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACC 58217
| ||| | || | ||||| ||||| || | ||||| | |||||| | |||
Sbjct 202250 AAGCAAGCAGTTCAAGATGTCATCACTGAGGCTGTTGAAATCGAGCAGGAGTTTTTGACC 202309
Query 58218 GAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAG 58277
|| || || || || | ||||| |||||| | ||||| | |||||||||
Sbjct 202310 GAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACTCCAACCTGATGAAGCAATACATTGAG 202369
Query 58278 TTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAAAA 58335
|||||||| || | ||| | || | || | || | ||| ||||| | |
Sbjct 202370 TTTGTTGCTGATCGTCTTCTCCTTGCCCTTGGCAACGACAAAGTC--TACAAATCTGCCA 202427
Query 58336 ATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaa 58395
| || || || || ||| | ||||| || | |||||||||||||| || || ||
Sbjct 202428 ACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGCAAGACAAACTTCTTTGAGAAGC 202487
Query 58396 aaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGTA-ACAA 58438
||| | || || ||||| || || ||| ||||| ||||
Sbjct 202488 GTGTTGGTGATTACCAAAAGGCTGGTGTCATGGCCGGTACACAA 202531
>seq61
Length=91600
Score = 114 bits (126), Expect = 1e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || || || ||||| || || |||||||| |||||| |||| ||||| | ||
Sbjct 25790 CATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTC 25849
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | ||||| | || |||||||||||| | || || |||||
Sbjct 25850 GGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGCATTCCACCTGACCA 25909
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| |||||||| ||||||||||| || | |||||| || | ||| || ||
Sbjct 25910 GCAACGTCTAATCTTCGCTGGCAAGCAACTTGAAGACGGCCGCACCCTCTCCGACTACAA 25969
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || || || ||||||||||| || ||
Sbjct 25970 CATCCAGAAGGAGTCAACTCTTCATCTCGTCCT 26002
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445761245826000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |