Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq411 127 4e-24 >seq411 Length=256942 Score = 127 bits (140), Expect = 4e-24 Identities = 430/659 (65%), Gaps = 22/659 (3%) Strand=Plus/Plus Query 94392 ACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTC 94451 ||| ||||| ||||||||||| |||||||| | |||| || || || |||| ||| || Sbjct 122233 ACCCTTGCCCTCAGCCTCATACTTCTCGTATAGAGCCTCGAATTCATCACCATAGACATC 122292 Query 94452 GGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCA------ATTCTTCCCAGCCTT 94505 | ||| || |||||||||| |||||||||||| | ||| |||||| || Sbjct 122293 TGCAAGACCTGGGCACTCGTTGGGGCACATCAGTGTCCATGTGCCATTCTTTTCA----- 122347 Query 94506 CACTCTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAA 94565 || | || |||||| ||||| | | ||||| ||| ||| ||||| | | | | Sbjct 122348 -ACACGCTTCATGAACAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAAC 122406 Query 94566 ATCTTCATTACCGGCATTCTTTCTGCAGTCAATAAAGTCCTTCACGTCCAGATGCCAATC 94625 ||||| || ||| ||| |||| | |||| | || || || ||||| Sbjct 122407 TTCTTCCTTGCCGTGATTTTTTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGG 122466 Query 94626 AGAAATATAGATGGCTGCAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCAC 94685 | |||||||| || || | ||||| ||| |||||| ||| | | | | Sbjct 122467 CTCGAGGTAGATGGCGAATGCACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGC 122526 Query 94686 AGAGACGTTAAAGATTTGGAGGAACGCCATGAGACCAGGGTGG-GTACCACTCCATGAC- 94743 || | ||| || | | ||| | | | || ||| | ||| || | | || | Sbjct 122527 AGTGTTGTTGAACACTCTGAGCATAGGAACGATACC--GTTGGAGTTGCCGTTTGTGCCA 122584 Query 94744 GAAATGGGGCTTCCTTTTGCCCTCAAATCA-TGAAAGTGGATGCCGAGTCCTCCAGCAGT 94802 | |||| ||| | || | || || || | | || |||| || |||||| | Sbjct 122585 GCAATGTAAGCTCCGGTGGCTCG-AATTCTGTGGACATTGAGACCGATACCACCAGCATT 122643 Query 94803 CTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTG 94862 ||| ||||| || || ||| || || || || ||||| ||||| |||||||| | Sbjct 122644 CTTAGAGATCATGGCACAAGTCTTGAGCGTGTCGTAGATACCATCAATACTATCATCCTT 122703 Query 94863 AAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGG-TGTGACTGTTCCACAATTAAACAGTG 94921 | | | | | ||||||||| |||||||| | |||| ||| || | || |||| Sbjct 122704 CATGTCAATTAAGAAGCACGAAGAAAGTTGTGCCTGTGG-TGTGCCGGCAGCGAAGAGTG 122762 Query 94922 TGGGGGAAGCATGGGTAAAATAGT-GCCTCGACATGAGATCATATGTTTCAATGACAGAT 94980 | || ||||| || || || || | |||| ||||| || | |||||| ||||| | | Sbjct 122763 TTGGCGAAGCGTGTGTGAAGTATTTGCCT-GACATCAGGTTATATGTCTCAATTGCTGCC 122821 Query 94981 TTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTC 95039 | ||| || ||||||||||| || || |||||||| ||||||| ||| ||||| || Sbjct 122822 TCGATATCCTCGCCGTGAATGCCAACTGCTACACGCATGATCATGTGCTGCGGGCGTTC 122880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989572271883375