Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq411 127 4e-24
>seq411
Length=256942
Score = 127 bits (140), Expect = 4e-24
Identities = 430/659 (65%), Gaps = 22/659 (3%)
Strand=Plus/Plus
Query 94392 ACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTC 94451
||| ||||| ||||||||||| |||||||| | |||| || || || |||| ||| ||
Sbjct 122233 ACCCTTGCCCTCAGCCTCATACTTCTCGTATAGAGCCTCGAATTCATCACCATAGACATC 122292
Query 94452 GGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCA------ATTCTTCCCAGCCTT 94505
| ||| || |||||||||| |||||||||||| | ||| |||||| ||
Sbjct 122293 TGCAAGACCTGGGCACTCGTTGGGGCACATCAGTGTCCATGTGCCATTCTTTTCA----- 122347
Query 94506 CACTCTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAA 94565
|| | || |||||| ||||| | | ||||| ||| ||| ||||| | | | |
Sbjct 122348 -ACACGCTTCATGAACAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAAC 122406
Query 94566 ATCTTCATTACCGGCATTCTTTCTGCAGTCAATAAAGTCCTTCACGTCCAGATGCCAATC 94625
||||| || ||| ||| |||| | |||| | || || || |||||
Sbjct 122407 TTCTTCCTTGCCGTGATTTTTTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGG 122466
Query 94626 AGAAATATAGATGGCTGCAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCAC 94685
| |||||||| || || | ||||| ||| |||||| ||| | | | |
Sbjct 122467 CTCGAGGTAGATGGCGAATGCACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGC 122526
Query 94686 AGAGACGTTAAAGATTTGGAGGAACGCCATGAGACCAGGGTGG-GTACCACTCCATGAC- 94743
|| | ||| || | | ||| | | | || ||| | ||| || | | || |
Sbjct 122527 AGTGTTGTTGAACACTCTGAGCATAGGAACGATACC--GTTGGAGTTGCCGTTTGTGCCA 122584
Query 94744 GAAATGGGGCTTCCTTTTGCCCTCAAATCA-TGAAAGTGGATGCCGAGTCCTCCAGCAGT 94802
| |||| ||| | || | || || || | | || |||| || |||||| |
Sbjct 122585 GCAATGTAAGCTCCGGTGGCTCG-AATTCTGTGGACATTGAGACCGATACCACCAGCATT 122643
Query 94803 CTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTG 94862
||| ||||| || || ||| || || || || ||||| ||||| |||||||| |
Sbjct 122644 CTTAGAGATCATGGCACAAGTCTTGAGCGTGTCGTAGATACCATCAATACTATCATCCTT 122703
Query 94863 AAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGG-TGTGACTGTTCCACAATTAAACAGTG 94921
| | | | | ||||||||| |||||||| | |||| ||| || | || ||||
Sbjct 122704 CATGTCAATTAAGAAGCACGAAGAAAGTTGTGCCTGTGG-TGTGCCGGCAGCGAAGAGTG 122762
Query 94922 TGGGGGAAGCATGGGTAAAATAGT-GCCTCGACATGAGATCATATGTTTCAATGACAGAT 94980
| || ||||| || || || || | |||| ||||| || | |||||| ||||| | |
Sbjct 122763 TTGGCGAAGCGTGTGTGAAGTATTTGCCT-GACATCAGGTTATATGTCTCAATTGCTGCC 122821
Query 94981 TTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTC 95039
| ||| || ||||||||||| || || |||||||| ||||||| ||| ||||| ||
Sbjct 122822 TCGATATCCTCGCCGTGAATGCCAACTGCTACACGCATGATCATGTGCTGCGGGCGTTC 122880
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989572271883375
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |