Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq411 208 1e-48 seq887 96.9 4e-15 >seq411 Length=256942 Score = 208 bits (230), Expect = 1e-48 Identities = 1198/1894 (63%), Gaps = 67/1894 (4%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||| || ||||| || || || | | || || ||||||||||| || || || || Sbjct 121118 GTGAACTGGATGGGTGCCGAAGCAGCCATTGTTCGGAGATAGTACATCCCAGTCTTGAGG 121177 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || | |||| || |||||||||||| || | ||| | ||||| || Sbjct 121178 CCCAACTTCCAACCTGCAAAATGCATACTGGTGATCTTGCCCATTGTAGGATCCTTCATG 121237 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 ||||| ||||| |||||| |||||| ||| | || || | || |||||||| | | | Sbjct 121238 TGGATGTTCATTGATTGAGATTGATCAATGTAAGCACCACGATCGGCAGCCATCTGGACG 121297 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285 || || || | |||||||| | || || || | ||| || || |||||| | Sbjct 121298 ATGGTACGCTGAGAGATTTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATG 121357 Query 62286 TTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 62342 || | ||| ||||| || ||||||||| | || || |||||||| || | || | Sbjct 121358 TTAGGAACATTTTGAATCGAACCACCATCTGCGATGATTCTATTCTTCATGTTGTCTGAC 121417 Query 62343 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCA 62402 |||| | | || | | | | | | ||||| || |||||||| |||||| Sbjct 121418 CATAGTCCCATATCAACAAGATCCTTCAACAACCATGGGTTGACGACTTGGAACTCTCCA 121477 Query 62403 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTT--- 62459 | | || | |||| ||| || || ||| || || | ||| |||| || Sbjct 121478 GCGAGCACACGACGAGAGTAGATGTTGGAGGTGTATGGCT----CGAAGCATTCGTTGAA 121533 Query 62460 CCCAA-AATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAG 62518 ||||| ||||||| || ||||| |||||||| || || | ||||| || | | Sbjct 121534 CCCAAGAATTTGACTGGTACTGGCAGTGGGCATAGGAGCAACAAGCAAACTGTTGCGGAT 121593 Query 62519 ACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAAC 62578 ||| ||| |||||| | || ||| ||||||| ||| ||||| | || || Sbjct 121594 ACCATATTGCTTGATTTGTTGCTTCAGAGAATCCCAATCCCAGAGATCAGTTGGAGTGAC 121653 Query 62579 ANNNNNNNNNNNATATTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTAT 62634 | ||||| || ||| || ||||| ||||| | ||||| | Sbjct 121654 ACCCCACATATCGTATTGAAGCTCACCCTTCGAGACTGG----AGATCCCTCGTATGTCT 121709 Query 62635 CATATGGTCCTTCCTTCTCAGCTAGTTTACAAC--TCGCCTCTAATGCACCGTAATAAAT 62692 | |||||||| ||||| ||| || | |||| || || || ||| || || Sbjct 121710 CGTATGGTCCAAGCTTCTTAGCGAGAT--CAACGGAAGCAGTCAAAGCGGCGTGGTAGAT 121767 Query 62693 GGTTTCAAAGATCTTCTTATTTAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATTTA 62751 || |||||||||| | || |||| |||| || || || || ||||| | Sbjct 121768 AGTCTCAAAGATCTGGATGTTGAGATGCTTG-GCCTCAGGTGACTCGAATGG-CAGACGC 121825 Query 62752 AGAG-AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 62810 |||| | || | || || | ||||||||||||| | | |||||||| || | Sbjct 121826 AGAGCCAAGAAGACATCAGCAAGACCTTGAACACCAAGAGCAATAGGTCTGTGACGGAAG 121885 Query 62811 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62870 || || | | |||||||||| || || || || | || || || || || || || Sbjct 121886 TTGGATTTCTTTGCTTCTGGAACTGGGTAGTAGTTGACCTCGATGATCTTGTTCAGGTTC 121945 Query 62871 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATTACA 62930 |||| | || | | || || | || || | || ||| | || | | || || Sbjct 121946 TTGACCACAACCTGGCAGACCTCGTGGAGCTTCTGGAAGTCATAGGTACCGT-TGTT-CA 122003 Query 62931 ----AAC--ATGTTCAATGCAACA--GATGCCAGATTACACACGGCTACCTCATTAGCAT 62982 ||| | || | || || ||||||| ||||| || ||||||| | Sbjct 122004 TGTCAACGTAGGTGGGAAGCGCCATGGATGCCAAGTTACAGCAAGCGACCTCATCTGGTG 122063 Query 62983 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 63042 | | || | | ||||||||||| || || | || || || | ||| | | Sbjct 122064 CGGAGTACTCGACAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCT 122123 Query 63043 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 63102 | || |||||| ||| || |||||||| || || ||||| || | ||||| || | | Sbjct 122124 GGTTGCTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTT 122183 Query 63103 GAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTT 63161 | | ||| | ||| | | ||| | | || | |||| | || | ||| | |||| Sbjct 122184 GGGCTTCGAGAATGGAGTACCA-AAGTTTCTGTGCCT---TGATGGTCTTGCGAC-CCTT 122238 Query 63162 TCTCT----TTCGTA--TAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC 63215 | || || || | ||||| | | ||||| || || || | |||| | Sbjct 122239 GCCCTCAGCCTCATACTTCTCGTATAGAGCC--TCGAATTCATCACCATAGACATCTGCA 122296 Query 63216 AATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT---CACTCGT 63272 | | || || || | || ||||||| | ||| | | ||| ||| || || Sbjct 122297 AGACCTGGGCACTCGTTGGGGCACATCAGTGTCCA---TGTGCCATTCTTTTCAACACGC 122353 Query 63273 TTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCG 63332 ||||| || ||||| || ||||| ||||| || ||||| | | | | ||| || Sbjct 122354 TTCATGAACAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCC 122413 Query 63333 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63392 || || ||| ||| ||||| ||| || | | || ||| | ||||| || || | | Sbjct 122414 TTGCCGTGATTTTTTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGG 122473 Query 63393 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63452 || ||||| | | ||||| || |||||||| ||||| || | ||||| || ||||| Sbjct 122474 TAGATGGCGAATGCACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTG 122533 Query 63453 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63512 || | ||||| | ||| |||| |||||||| || | || || || || | || || Sbjct 122534 TTGAACACTCTGAGCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAA 122593 Query 63513 CCTCCACTGGCACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 63568 |||| |||| ||||| | || |||| ||||| || || || || | ||||| Sbjct 122594 GCTCCGGTGGCTCGAATTCTGTGGAC--ATTG--AGACCGATACCACCAGCATTCTTAGA 122649 Query 63569 GATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTT 63628 ||| | || || || | |||||| ||||| || || || |||||||| |||||| Sbjct 122650 GATCATGGCACAAGTCTTGAGCGTGTCGTAGATACCATCAATACTATCATCCTTCATGTC 122709 Query 63629 AAGTAGAAAACAGCTAGACATTTGGTGAC-GAGTAGTTCCCGCATTAAATAAGGTAGGAG 63687 || || || || ||| | || ||| | | | || || ||| || | || || | Sbjct 122710 AATTAAGAAGCACGAAGAAAGTT-GTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCG 122768 Query 63688 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT 63747 ||||||| || || |||| | || | || || || |||||||| |||| || |||| Sbjct 122769 AAGCGTGTGTGAAGTATTTGCCTGACATCAGGTTATATGTCTCAATTGCTGCCTCGATAT 122828 Query 63748 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTT 63807 || ||||| || ||||| |||||||| | ||||||||| || | ||| |||| Sbjct 122829 CCTCGCCGTGAATGCCAACTGCTACACGCATGATCATGTGCTGCGGGCGTTCGCAGATTT 122888 Query 63808 TGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 63867 || | | | | ||| ||| ||| | || || ||||| || || | ||| Sbjct 122889 TGCCATCGAGGCGGAGAAGGTATGATCGTTCGAGGGTCTTGAAACCGAAGTATTGGTAGT 122948 Query 63868 AAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901 |||||||| ||||| | |||| |||||||||| Sbjct 122949 TGAAGTCTCGATCGTAGACAATAGCCGAATTGAG 122982 >seq887 Length=503426 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||| ||||||||||| | | |||||| ||||| || || || ||||||| ||| ||||| Sbjct 202201 GTGAAGACCCTCGTCACGAGAAATTAACTCGTTGGAGAAGGTAAGTCCGGCCATGAGGCC 202142 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 |||||| || | ||| || || || |||||||| || |||||||| || || || || Sbjct 202141 ACGCTTCTTCAACCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATACCCTCAACGGC 202082 Query 33716 AGCAAAGGCAA 33726 || || |||| Sbjct 202081 GGCGAATGCAA 202071 Score = 84.2 bits (92), Expect = 3e-11 Identities = 196/294 (67%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 || |||| || ||||||||||| || || | || || || ||||| || || Sbjct 201903 TCCTTAATGTATGTATCGATCAACAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATG 201844 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT 33962 || || ||||||||||| || | ||||| | ||| || |||||| || || || || Sbjct 201843 ATTTGGAATCCGTAGAAGCACCGTGCCTCTGGAATTTGGACTTCTCCACTGAAGCGCTCG 201784 Query 33963 GCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 34022 | || || || || || || ||||| ||| || || || || | || || || Sbjct 201783 ACCAAGTTCTCGTTAACAATACCATCGGAGGCGGCGAAGAAGGCAAGAACGTGAGAAATG 201724 Query 34023 AAATATTTTTCGTC----TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATC 34078 || ||| ||||| | | ||| | || ||||| |||| | || || || | || Sbjct 201723 AAGTATCGCTCGTCATCATTGAGTTTG-TTGTTCCAGTCATGAAGGTCCTTGGACAGGTC 201665 Query 34079 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 34132 | || || | ||||| ||||||||||| ||||| || ||||| | |||||| Sbjct 201664 AATCTCCTCTGCGGTCCAGAATGATGCCTCGGCCTTCTTGTACATCTGCCAGAT 201611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629810317734000