Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq411 113 4e-20 >seq411 Length=256942 Score = 113 bits (124), Expect = 4e-20 Identities = 291/441 (66%), Gaps = 8/441 (2%) Strand=Plus/Plus Query 38113 TCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCA 38172 ||||| | ||| ||||||||||| || | || || | | ||| || |||| || | Sbjct 122444 TCGAAAACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGTCGCTTGTTT 122503 Query 38173 CCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCA 38232 || ||||| | || |||||| | ||||| || | | ||| | |||||| || ||||| Sbjct 122504 CCACCCTGGTCAACATATCTGGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATACCG 122563 Query 38233 TTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATT----ACTTAT 38288 || || ||||||||| | || | || |||| || | ||||| || | || || Sbjct 122564 TTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTGGCTCGAATTCTGTGGAC--AT 122621 Query 38289 CGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAA 38348 || | || || ||||| |||| || || || | || || || | ||| || | Sbjct 122622 TGAGA--CCGATACCACCAGCATTCTTAGAGATCATGGCACAAGTCTTGAGCGTGTCGTA 122679 Query 38349 TATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAA 38408 ||||| || ||||| |||||||| || | || || || ||| | ||| | | Sbjct 122680 GATACCATCAATACTATCATCCTTCATGTCAATTAAGAAGCACGAAGAAAGTTGTGCCTG 122739 Query 38409 TGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATA 38468 ||| || ||||| || | ||| || || || ||| |||| |||| | |||| Sbjct 122740 TGGTGTGCCGGCAGCGAAGAGTGTTGGCGAAGCGTGTGTGAAGTATTTGCCTGACATCAG 122799 Query 38469 ATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCAT 38528 |||||||| || ||| | | || ||||| |||||||||| || | | ||| | ||| Sbjct 122800 GTTATATGTCTCAATTGCTGCCTCGATATCCTCGCCGTGAATGCCAACTGCTACACGCAT 122859 Query 38529 TAGCATATGTTGTGGTCTTTC 38549 | ||| || || || | ||| Sbjct 122860 GATCATGTGCTGCGGGCGTTC 122880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468519382682000