Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq411 113 4e-20
>seq411
Length=256942
Score = 113 bits (124), Expect = 4e-20
Identities = 291/441 (66%), Gaps = 8/441 (2%)
Strand=Plus/Plus
Query 38113 TCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCA 38172
||||| | ||| ||||||||||| || | || || | | ||| || |||| || |
Sbjct 122444 TCGAAAACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGTCGCTTGTTT 122503
Query 38173 CCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCA 38232
|| ||||| | || |||||| | ||||| || | | ||| | |||||| || |||||
Sbjct 122504 CCACCCTGGTCAACATATCTGGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATACCG 122563
Query 38233 TTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATT----ACTTAT 38288
|| || ||||||||| | || | || |||| || | ||||| || | || ||
Sbjct 122564 TTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTGGCTCGAATTCTGTGGAC--AT 122621
Query 38289 CGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAA 38348
|| | || || ||||| |||| || || || | || || || | ||| || |
Sbjct 122622 TGAGA--CCGATACCACCAGCATTCTTAGAGATCATGGCACAAGTCTTGAGCGTGTCGTA 122679
Query 38349 TATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAA 38408
||||| || ||||| |||||||| || | || || || ||| | ||| | |
Sbjct 122680 GATACCATCAATACTATCATCCTTCATGTCAATTAAGAAGCACGAAGAAAGTTGTGCCTG 122739
Query 38409 TGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATA 38468
||| || ||||| || | ||| || || || ||| |||| |||| | ||||
Sbjct 122740 TGGTGTGCCGGCAGCGAAGAGTGTTGGCGAAGCGTGTGTGAAGTATTTGCCTGACATCAG 122799
Query 38469 ATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCAT 38528
|||||||| || ||| | | || ||||| |||||||||| || | | ||| | |||
Sbjct 122800 GTTATATGTCTCAATTGCTGCCTCGATATCCTCGCCGTGAATGCCAACTGCTACACGCAT 122859
Query 38529 TAGCATATGTTGTGGTCTTTC 38549
| ||| || || || | |||
Sbjct 122860 GATCATGTGCTGCGGGCGTTC 122880
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468519382682000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |