Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq411 192 8e-44 seq887 107 3e-18 >seq411 Length=256942 Score = 192 bits (212), Expect = 8e-44 Identities = 1192/1893 (63%), Gaps = 61/1893 (3%) Strand=Plus/Plus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 ||||| || ||||| || || || | | || || ||||||||||| || || || || Sbjct 121118 GTGAACTGGATGGGTGCCGAAGCAGCCATTGTTCGGAGATAGTACATCCCAGTCTTGAGG 121177 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || | |||| || |||||||||||| || | ||| | ||||| || Sbjct 121178 CCCAACTTCCAACCTGCAAAATGCATACTGGTGATCTTGCCCATTGTAGGATCCTTCATG 121237 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 ||||| ||||| |||||| |||||| ||| | || || | || |||||||| | | | Sbjct 121238 TGGATGTTCATTGATTGAGATTGATCAATGTAAGCACCACGATCGGCAGCCATCTGGACG 121297 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078 || || || | |||||||| | || || || | ||| || || |||||| | Sbjct 121298 ATGGTACGCTGAGAGATTTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATG 121357 Query 65079 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135 || | | || ||||| || ||||||||||| || || |||||||| || | || | Sbjct 121358 TTAGGAACATTTTGAATCGAACCACCATCTGCGATGATTCTATTCTTCATGTTGTCTGAC 121417 Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195 |||| | | || | | | | | | || || || ||||| || |||||| Sbjct 121418 CATAGTCCCATATCAACAAGATCCTTCAACAACCATGGGTTGACGACTTGGAACTCTCCA 121477 Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT--- 65252 | | || | |||| ||| || || ||| || || || | || |||| || Sbjct 121478 GCGAGCACACGACGAGAGTAGATGTTGGAGGTGTATGGCTCGA-AG---CATTCGTTGAA 121533 Query 65253 CCCAA-AATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAG 65311 ||||| ||||||| || ||||| |||||||| || || | ||||| || | | Sbjct 121534 CCCAAGAATTTGACTGGTACTGGCAGTGGGCATAGGAGCAACAAGCAAACTGTTGCGGAT 121593 Query 65312 ACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAAC 65371 ||| ||| |||||| | || |||| ||||||| ||| ||||| | || || Sbjct 121594 ACCATATTGCTTGATTTGTTGCTTCAGAGAATCCCAATCCCAGAGATCAGTTGGAGTGAC 121653 Query 65372 NNNNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTAT 65427 ||| || ||| || ||||| | |||| | ||||| | Sbjct 121654 ACCCCACATATCGTATTGAAGCTCACCCTTCGAGACTGGAG----ATCCCTCGTATGTCT 121709 Query 65428 CGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGG 65487 |||||||||| ||||| ||| || ||| || || || ||| || || | Sbjct 121710 CGTATGGTCCAAGCTTCTTAGCGAGATCAACGGAAGCAGTCAAAGCGGCGTGGTAGATAG 121769 Query 65488 TTTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTA-TCAAATGGATAATTTAA 65545 | || ||||||| | || |||| |||| || |||| | || ||||| | | Sbjct 121770 TCTCAAAGATCTGGATGTTGAGATGCTTGGCCT--CAGGTGACTCGAATGGCAGACGCA- 121826 Query 65546 GAGAATAAACG-CGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 65604 ||| | | | | || || | ||||||||||||| | | |||||||| || | | Sbjct 121827 GAGCCAAGAAGACATCAGCAAGACCTTGAACACCAAGAGCAATAGGTCTGTGACGGAAGT 121886 Query 65605 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 65664 | || | | |||||||||| || || || || | || || || || || || || Sbjct 121887 TGGATTTCTTTGCTTCTGGAACTGGGTAGTAGTTGACCTCGATGATCTTGTTCAGGTTCT 121946 Query 65665 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT----CGCTCATCTATT 65720 |||| | || | | || || | || || | || ||| | || | || || Sbjct 121947 TGACCACAACCTGGCAGACCTCGTGGAGCTTCTGGAAGTCATAGGTACCGTTGTTC-ATG 122005 Query 65721 ACAAAC-ATGTTCAATGCAACA--GATGCCAGATTACAAACGGCTACCTCATTAGCATCC 65777 ||| | || | || || ||||||| ||||| || ||||||| | | Sbjct 122006 TCAACGTAGGTGGGAAGCGCCATGGATGCCAAGTTACAGCAAGCGACCTCATCTGGTGCG 122065 Query 65778 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 65837 | || | | ||||||||||| || || | ||||| || | ||| | || Sbjct 122066 GAGTACTCGACAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTGG 122125 Query 65838 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 65897 || |||||| ||| || |||||||| || || ||||| || | ||||| || | || Sbjct 122126 TTGCTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGG 122185 Query 65898 GATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTC 65956 | ||| | ||| | | ||| | | || | ||||| || | ||| | ||| | Sbjct 122186 GCTTCGAGAATGGAGTACCAAA-GTTTCTGTGCCTTGATGGTC---TTGCGACCCTTGCC 122241 Query 65957 -TCTTTCGTATAGT----GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT 66011 || | ||| | ||||| | | ||||| || || || | |||| | | Sbjct 122242 CTCAGCCTCATACTTCTCGTATAGAGCC--TCGAATTCATCACCATAGACATCTGCAAGA 122299 Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTC 66068 || || || || | || ||||||| | ||| | | ||| ||| || || ||| Sbjct 122300 CCTGGGCACTCGTTGGGGCACATCAGTGTCCA---TGTGCCATTCTTTTCAACACGCTTC 122356 Query 66069 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTT 66128 || || ||||| || ||||| ||||| || | ||| | | | | ||| || || Sbjct 122357 ATGAACAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCTTG 122416 Query 66129 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTAT 66188 || ||| ||| ||||| ||| || | | || ||| ||||| || || | ||| Sbjct 122417 CCGTGATTTTTTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTAG 122476 Query 66189 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 66248 ||||| | | ||||| || |||||||| ||||| || | ||||| || ||||| || Sbjct 122477 ATGGCGAATGCACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGTTG 122536 Query 66249 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTT 66308 | ||||| | ||| |||| ||||| ||||| | || || || || | || || | Sbjct 122537 AACACTCTGAGCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCT 122596 Query 66309 CCACTTGCACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 66364 || | || ||||| | || ||||| |||| || || || || | |||||||| Sbjct 122597 CCGGTGGCTCGAATTCTGTGGAC--ATTGA--GACCGATACCACCAGCATTCTTAGAGAT 122652 Query 66365 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 66424 | || || || | ||| || ||||| || || |||||||||||| |||||| || Sbjct 122653 CATGGCACAAGTCTTGAGCGTGTCGTAGATACCATCAATACTATCATCCTTCATGTCAAT 122712 Query 66425 TAGAAAACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 66483 || || || ||| | || ||| | | || || ||| || | || || |||| Sbjct 122713 TAAGAAGCACGAAGAAAGTT-GTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGAAG 122771 Query 66484 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCC 66543 |||| || || |||| | || | || || || |||||||| |||| || |||||| Sbjct 122772 CGTGTGTGAAGTATTTGCCTGACATCAGGTTATATGTCTCAATTGCTGCCTCGATATCCT 122831 Query 66544 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 66603 ||||| || ||||| |||||||| | ||||||||| || | ||| ||| ||| Sbjct 122832 CGCCGTGAATGCCAACTGCTACACGCATGATCATGTGCTGCGGGCGTTCGCAGATTTTGC 122891 Query 66604 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 66663 | | | | ||| ||| ||| | || || ||||| || || | ||| | Sbjct 122892 CATCGAGGCGGAGAAGGTATGATCGTTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGA 122951 Query 66664 AGTCTCGTTCGTAAATAATAACCGAGTTGAGTT 66696 ||||||| ||||| | |||| |||| ||||||| Sbjct 122952 AGTCTCGATCGTAGACAATAGCCGAATTGAGTT 122984 >seq887 Length=503426 Score = 107 bits (118), Expect = 3e-18 Identities = 327/503 (65%), Gaps = 3/503 (1%) Strand=Plus/Minus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 |||||||| ||||| ||||| || || || || || || || || | | || || || Sbjct 202506 TTTTGGTAATCACCAACACGCTTCTCAAAGAAGTTTGTCTTGCCGGCAAGAGAGATGTTC 202447 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 |||||||| |||||||| ||| | || || | ||| | || | || | Sbjct 202446 TCCATGAAGTCGAATGGGTTGGCAGATTTGTAGACTTTGTCGTTGCCAAGGGCAAGGAGA 202387 Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 | | ||| || ||||| || || ||| ||||||| | | ||||| || | ||| Sbjct 202386 AGACGATCAGCAACAAACTCAATGTATTGCTTCATCAGGTTGGAGTTCATGCCGAGAAGA 202327 Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 36106 | ||||||||| | || | ||| || || || || || || || || || | | Sbjct 202326 GCACAAGGAAGAGCCTCGGTCAAAAACTCCTGCTCGATTTCAACAGCCTCAGTGATGACA 202267 Query 36107 GATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 36166 | |||| || | || || ||| | || || || | | || || || Sbjct 202266 TCTTGAACTGCTTGCTTGCTTGGGCGATGCTTCAAGTGAGAGAAGAGGAGGCAAGCAAAG 202207 Query 36167 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 36226 || ||| ||||||||||| | | |||||| |||||||| || || ||||||| ||| Sbjct 202206 TCAGTGTGAAGACCCTCGTCACGAGAAATTAACTCGTTGGAGAAGGTAAGTCCGGCCATG 202147 Query 36227 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCT 36286 ||||||||||| || | ||| || || || || ||||| ||| ||||| || || || Sbjct 202146 AGGCCACGCTTCTTCAACCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATACCCTCA 202087 Query 36287 ACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG--CAC-TGTCATGTATCCACTTT 36343 || || || || |||| | | || || | || || |||| || ||||| | Sbjct 202086 ACGGCGGCGAATGCAACCAAGCGCTGAGCAAATGTGGATGACTTGTCTTGGATCCATCGT 202027 Query 36344 TGAGCCCAATCGGCCTTCTTTTT 36366 |||||| ||||||||||| || Sbjct 202026 ACAGCCCAGTCGGCCTTCTTCTT 202004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658165189877000