Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq411 192 8e-44
seq887 107 3e-18
>seq411
Length=256942
Score = 192 bits (212), Expect = 8e-44
Identities = 1192/1893 (63%), Gaps = 61/1893 (3%)
Strand=Plus/Plus
Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898
||||| || ||||| || || || | | || || ||||||||||| || || || ||
Sbjct 121118 GTGAACTGGATGGGTGCCGAAGCAGCCATTGTTCGGAGATAGTACATCCCAGTCTTGAGG 121177
Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958
|| | |||| || |||||||||||| || | ||| | ||||| ||
Sbjct 121178 CCCAACTTCCAACCTGCAAAATGCATACTGGTGATCTTGCCCATTGTAGGATCCTTCATG 121237
Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018
||||| ||||| |||||| |||||| ||| | || || | || |||||||| | | |
Sbjct 121238 TGGATGTTCATTGATTGAGATTGATCAATGTAAGCACCACGATCGGCAGCCATCTGGACG 121297
Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078
|| || || | |||||||| | || || || | ||| || || |||||| |
Sbjct 121298 ATGGTACGCTGAGAGATTTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATG 121357
Query 65079 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135
|| | | || ||||| || ||||||||||| || || |||||||| || | || |
Sbjct 121358 TTAGGAACATTTTGAATCGAACCACCATCTGCGATGATTCTATTCTTCATGTTGTCTGAC 121417
Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195
|||| | | || | | | | | | || || || ||||| || ||||||
Sbjct 121418 CATAGTCCCATATCAACAAGATCCTTCAACAACCATGGGTTGACGACTTGGAACTCTCCA 121477
Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT--- 65252
| | || | |||| ||| || || ||| || || || | || |||| ||
Sbjct 121478 GCGAGCACACGACGAGAGTAGATGTTGGAGGTGTATGGCTCGA-AG---CATTCGTTGAA 121533
Query 65253 CCCAA-AATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAG 65311
||||| ||||||| || ||||| |||||||| || || | ||||| || | |
Sbjct 121534 CCCAAGAATTTGACTGGTACTGGCAGTGGGCATAGGAGCAACAAGCAAACTGTTGCGGAT 121593
Query 65312 ACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAAC 65371
||| ||| |||||| | || |||| ||||||| ||| ||||| | || ||
Sbjct 121594 ACCATATTGCTTGATTTGTTGCTTCAGAGAATCCCAATCCCAGAGATCAGTTGGAGTGAC 121653
Query 65372 NNNNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTAT 65427
||| || ||| || ||||| | |||| | ||||| |
Sbjct 121654 ACCCCACATATCGTATTGAAGCTCACCCTTCGAGACTGGAG----ATCCCTCGTATGTCT 121709
Query 65428 CGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGG 65487
|||||||||| ||||| ||| || ||| || || || ||| || || |
Sbjct 121710 CGTATGGTCCAAGCTTCTTAGCGAGATCAACGGAAGCAGTCAAAGCGGCGTGGTAGATAG 121769
Query 65488 TTTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTA-TCAAATGGATAATTTAA 65545
| || ||||||| | || |||| |||| || |||| | || ||||| | |
Sbjct 121770 TCTCAAAGATCTGGATGTTGAGATGCTTGGCCT--CAGGTGACTCGAATGGCAGACGCA- 121826
Query 65546 GAGAATAAACG-CGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 65604
||| | | | | || || | ||||||||||||| | | |||||||| || | |
Sbjct 121827 GAGCCAAGAAGACATCAGCAAGACCTTGAACACCAAGAGCAATAGGTCTGTGACGGAAGT 121886
Query 65605 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 65664
| || | | |||||||||| || || || || | || || || || || || ||
Sbjct 121887 TGGATTTCTTTGCTTCTGGAACTGGGTAGTAGTTGACCTCGATGATCTTGTTCAGGTTCT 121946
Query 65665 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT----CGCTCATCTATT 65720
|||| | || | | || || | || || | || ||| | || | || ||
Sbjct 121947 TGACCACAACCTGGCAGACCTCGTGGAGCTTCTGGAAGTCATAGGTACCGTTGTTC-ATG 122005
Query 65721 ACAAAC-ATGTTCAATGCAACA--GATGCCAGATTACAAACGGCTACCTCATTAGCATCC 65777
||| | || | || || ||||||| ||||| || ||||||| | |
Sbjct 122006 TCAACGTAGGTGGGAAGCGCCATGGATGCCAAGTTACAGCAAGCGACCTCATCTGGTGCG 122065
Query 65778 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 65837
| || | | ||||||||||| || || | ||||| || | ||| | ||
Sbjct 122066 GAGTACTCGACAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTGG 122125
Query 65838 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 65897
|| |||||| ||| || |||||||| || || ||||| || | ||||| || | ||
Sbjct 122126 TTGCTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGG 122185
Query 65898 GATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTC 65956
| ||| | ||| | | ||| | | || | ||||| || | ||| | ||| |
Sbjct 122186 GCTTCGAGAATGGAGTACCAAA-GTTTCTGTGCCTTGATGGTC---TTGCGACCCTTGCC 122241
Query 65957 -TCTTTCGTATAGT----GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT 66011
|| | ||| | ||||| | | ||||| || || || | |||| | |
Sbjct 122242 CTCAGCCTCATACTTCTCGTATAGAGCC--TCGAATTCATCACCATAGACATCTGCAAGA 122299
Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTC 66068
|| || || || | || ||||||| | ||| | | ||| ||| || || |||
Sbjct 122300 CCTGGGCACTCGTTGGGGCACATCAGTGTCCA---TGTGCCATTCTTTTCAACACGCTTC 122356
Query 66069 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTT 66128
|| || ||||| || ||||| ||||| || | ||| | | | | ||| || ||
Sbjct 122357 ATGAACAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCTTG 122416
Query 66129 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTAT 66188
|| ||| ||| ||||| ||| || | | || ||| ||||| || || | |||
Sbjct 122417 CCGTGATTTTTTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTAG 122476
Query 66189 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 66248
||||| | | ||||| || |||||||| ||||| || | ||||| || ||||| ||
Sbjct 122477 ATGGCGAATGCACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGTTG 122536
Query 66249 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTT 66308
| ||||| | ||| |||| ||||| ||||| | || || || || | || || |
Sbjct 122537 AACACTCTGAGCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCT 122596
Query 66309 CCACTTGCACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 66364
|| | || ||||| | || ||||| |||| || || || || | ||||||||
Sbjct 122597 CCGGTGGCTCGAATTCTGTGGAC--ATTGA--GACCGATACCACCAGCATTCTTAGAGAT 122652
Query 66365 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 66424
| || || || | ||| || ||||| || || |||||||||||| |||||| ||
Sbjct 122653 CATGGCACAAGTCTTGAGCGTGTCGTAGATACCATCAATACTATCATCCTTCATGTCAAT 122712
Query 66425 TAGAAAACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 66483
|| || || ||| | || ||| | | || || ||| || | || || ||||
Sbjct 122713 TAAGAAGCACGAAGAAAGTT-GTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGAAG 122771
Query 66484 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCC 66543
|||| || || |||| | || | || || || |||||||| |||| || ||||||
Sbjct 122772 CGTGTGTGAAGTATTTGCCTGACATCAGGTTATATGTCTCAATTGCTGCCTCGATATCCT 122831
Query 66544 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 66603
||||| || ||||| |||||||| | ||||||||| || | ||| ||| |||
Sbjct 122832 CGCCGTGAATGCCAACTGCTACACGCATGATCATGTGCTGCGGGCGTTCGCAGATTTTGC 122891
Query 66604 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 66663
| | | | ||| ||| ||| | || || ||||| || || | ||| |
Sbjct 122892 CATCGAGGCGGAGAAGGTATGATCGTTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGA 122951
Query 66664 AGTCTCGTTCGTAAATAATAACCGAGTTGAGTT 66696
||||||| ||||| | |||| |||| |||||||
Sbjct 122952 AGTCTCGATCGTAGACAATAGCCGAATTGAGTT 122984
>seq887
Length=503426
Score = 107 bits (118), Expect = 3e-18
Identities = 327/503 (65%), Gaps = 3/503 (1%)
Strand=Plus/Minus
Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926
|||||||| ||||| ||||| || || || || || || || || | | || || ||
Sbjct 202506 TTTTGGTAATCACCAACACGCTTCTCAAAGAAGTTTGTCTTGCCGGCAAGAGAGATGTTC 202447
Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986
|||||||| |||||||| ||| | || || | ||| | || | || |
Sbjct 202446 TCCATGAAGTCGAATGGGTTGGCAGATTTGTAGACTTTGTCGTTGCCAAGGGCAAGGAGA 202387
Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046
| | ||| || ||||| || || ||| ||||||| | | ||||| || | |||
Sbjct 202386 AGACGATCAGCAACAAACTCAATGTATTGCTTCATCAGGTTGGAGTTCATGCCGAGAAGA 202327
Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 36106
| ||||||||| | || | ||| || || || || || || || || || | |
Sbjct 202326 GCACAAGGAAGAGCCTCGGTCAAAAACTCCTGCTCGATTTCAACAGCCTCAGTGATGACA 202267
Query 36107 GATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 36166
| |||| || | || || ||| | || || || | | || || ||
Sbjct 202266 TCTTGAACTGCTTGCTTGCTTGGGCGATGCTTCAAGTGAGAGAAGAGGAGGCAAGCAAAG 202207
Query 36167 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 36226
|| ||| ||||||||||| | | |||||| |||||||| || || ||||||| |||
Sbjct 202206 TCAGTGTGAAGACCCTCGTCACGAGAAATTAACTCGTTGGAGAAGGTAAGTCCGGCCATG 202147
Query 36227 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCT 36286
||||||||||| || | ||| || || || || ||||| ||| ||||| || || ||
Sbjct 202146 AGGCCACGCTTCTTCAACCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATACCCTCA 202087
Query 36287 ACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG--CAC-TGTCATGTATCCACTTT 36343
|| || || || |||| | | || || | || || |||| || ||||| |
Sbjct 202086 ACGGCGGCGAATGCAACCAAGCGCTGAGCAAATGTGGATGACTTGTCTTGGATCCATCGT 202027
Query 36344 TGAGCCCAATCGGCCTTCTTTTT 36366
|||||| ||||||||||| ||
Sbjct 202026 ACAGCCCAGTCGGCCTTCTTCTT 202004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658165189877000
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