Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_003494.1
Length=111362
Score E
Sequences producing significant alignments: (Bits) Value
seq887 102 6e-17
>seq887
Length=503426
Score = 102 bits (112), Expect = 6e-17
Identities = 288/436 (66%), Gaps = 10/436 (2%)
Strand=Plus/Plus
Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809
|| || || || ||||| || || | || ||| ||||| || | || |||||| ||
Sbjct 202073 GCATTCGCCGCCGTTGAGGGTATCTTCTTCAGTGGTTCATTCGCCTCTATCTTCTGGTTG 202132
Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869
||||| ||| |||||| | || | | || ||||||||||| ||| ||||||||
Sbjct 202133 AAGAAGCGTGGCCTCATGGCCGGACTTACCTTCTCCAACGAGTTAATTTCTCGTGACGAG 202192
Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGTGTCAG 22929
||||| ||| |||||||||||| | || || || || || | | || ||
Sbjct 202193 GGTCTTCACACTGACTTTGCTTGCCTCCTCTTCTCTCACTTG--AAGC--ATCGCCCAAG 202248
Query 22930 GACG-ATGCACATCAA---ATCATATCTGATGCCGTTGACATTGAGACGGCTTTCTTCCA 22985
| | | ||| |||| |||| |||| || ||||| || ||| || || ||
Sbjct 202249 CAAGCAAGCAGTTCAAGATGTCATCACTGAGGCTGTTGAAATCGAGCAGGAGTTTTTGAC 202308
Query 22986 AGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTGTACATACA 23045
||||| || | || || || ||||| || |||| | ||||| |
Sbjct 202309 CGAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACTCCAACCTGATGAAGCAATACATTGA 202368
Query 23046 GTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATG-CAAAGATGTATAACGTTGCCA 23104
||||||||| ||||| || ||| |||||| || | | ||||| | || || |||||
Sbjct 202369 GTTTGTTGCTGATCGTCTTCTCCTTGCCCTTGGCAACGACAAAG-TCTACAAATCTGCCA 202427
Query 23105 ATCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCTTTGAACGCC 23164
| ||||| || |||||||| ||||| ||| || || |||||||||||||| |
Sbjct 202428 ACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGCAAGACAAACTTCTTTGAGAAGC 202487
Query 23165 GTGTGAGTGAATATCA 23180
|||| |||| || ||
Sbjct 202488 GTGTTGGTGATTACCA 202503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 356229584022775
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |