Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq887 102 6e-17 >seq887 Length=503426 Score = 102 bits (112), Expect = 6e-17 Identities = 288/436 (66%), Gaps = 10/436 (2%) Strand=Plus/Plus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 || || || || ||||| || || | || ||| ||||| || | || |||||| || Sbjct 202073 GCATTCGCCGCCGTTGAGGGTATCTTCTTCAGTGGTTCATTCGCCTCTATCTTCTGGTTG 202132 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 ||||| ||| |||||| | || | | || ||||||||||| ||| |||||||| Sbjct 202133 AAGAAGCGTGGCCTCATGGCCGGACTTACCTTCTCCAACGAGTTAATTTCTCGTGACGAG 202192 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGTGTCAG 22929 ||||| ||| |||||||||||| | || || || || || | | || || Sbjct 202193 GGTCTTCACACTGACTTTGCTTGCCTCCTCTTCTCTCACTTG--AAGC--ATCGCCCAAG 202248 Query 22930 GACG-ATGCACATCAA---ATCATATCTGATGCCGTTGACATTGAGACGGCTTTCTTCCA 22985 | | | ||| |||| |||| |||| || ||||| || ||| || || || Sbjct 202249 CAAGCAAGCAGTTCAAGATGTCATCACTGAGGCTGTTGAAATCGAGCAGGAGTTTTTGAC 202308 Query 22986 AGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTGTACATACA 23045 ||||| || | || || || ||||| || |||| | ||||| | Sbjct 202309 CGAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACTCCAACCTGATGAAGCAATACATTGA 202368 Query 23046 GTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATG-CAAAGATGTATAACGTTGCCA 23104 ||||||||| ||||| || ||| |||||| || | | ||||| | || || ||||| Sbjct 202369 GTTTGTTGCTGATCGTCTTCTCCTTGCCCTTGGCAACGACAAAG-TCTACAAATCTGCCA 202427 Query 23105 ATCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCTTTGAACGCC 23164 | ||||| || |||||||| ||||| ||| || || |||||||||||||| | Sbjct 202428 ACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGCAAGACAAACTTCTTTGAGAAGC 202487 Query 23165 GTGTGAGTGAATATCA 23180 |||| |||| || || Sbjct 202488 GTGTTGGTGATTACCA 202503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356229584022775