Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq411 248 1e-60 seq887 116 5e-21 >seq411 Length=256942 Score = 248 bits (274), Expect = 1e-60 Identities = 1202/1885 (64%), Gaps = 45/1885 (2%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 ||||| || ||||| || || || | | || || ||||||||||| || || || || Sbjct 121118 GTGAACTGGATGGGTGCCGAAGCAGCCATTGTTCGGAGATAGTACATCCCAGTCTTGAGG 121177 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || | |||| || ||||||||||| || | ||| | ||||| || Sbjct 121178 CCCAACTTCCAACCTGCAAAATGCATACTGGTGATCTTGCCCATTGTAGGATCCTTCATG 121237 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 ||||| ||||| |||||| |||||| ||| | || || | || |||||||| | | | Sbjct 121238 TGGATGTTCATTGATTGAGATTGATCAATGTAAGCACCACGATCGGCAGCCATCTGGACG 121297 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957 || || || | |||||||| | || || || | ||| || || |||||| | Sbjct 121298 ATGGTACGCTGAGAGATTTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATG 121357 Query 78958 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014 || | ||| ||||| || ||||||||||| || || |||||||| || | || | Sbjct 121358 TTAGGAACATTTTGAATCGAACCACCATCTGCGATGATTCTATTCTTCATGTTGTCTGAC 121417 Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074 |||| | | || | | | | | | || || || ||||| || |||||| Sbjct 121418 CATAGTCCCATATCAACAAGATCCTTCAACAACCATGGGTTGACGACTTGGAACTCTCCA 121477 Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134 | | || | |||| ||| || || ||| ||||| || | |||| || || Sbjct 121478 GCGAGCACACGACGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCATTCGTTGAACCCA 121537 Query 79135 AAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 79194 | ||||||| || || || |||||||| || || | ||||| || | | ||| Sbjct 121538 AGAATTTGACTGGTACTGGCAGTGGGCATAGGAGCAACAAGCAAACTGTTGCGGATACCA 121597 Query 79195 TATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTC 79254 ||| |||||| | || ||||| ||||||||||| ||||||| || ||| | Sbjct 121598 TATTGCTTGATTTGTTGCTTCAGAGAATCCCAATCCCAGAGATCAGTTGGAGTGACACCC 121657 Query 79255 CAAAGATCATATTGTAGAATACCGTTACTAG-CGTATGATCCTGTGTATGTTTCATAAGG 79313 || | ||| ||||| || ||| || | || | ||||| |||||| || || || Sbjct 121658 CACATATCGTATTGAAGCTCACCCTT-CGAGACTGGAGATCCCTCGTATGTCTCGTATGG 121716 Query 79314 TCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAA 79373 ||| ||| | || | ||| || || || ||| || || || || || Sbjct 121717 TCCAAGCTTCTTAGCGAGATCAACGGAAGCAGTCAAAGCGGCGTGGTAGATAGTCTCAAA 121776 Query 79374 AATCTTCTTATTGAGAT-CTTGTGCTTCTAGGCTA-TCAAATGGATAATTTAAGAG-AAT 79430 |||| | ||||||| |||| || || ||| | || ||||| | |||| | Sbjct 121777 GATCTGGATGTTGAGATGCTTG-GCCTC-AGGTGACTCGAATGG-CAGACGCAGAGCCAA 121833 Query 79431 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAAT 79490 || | || || | ||||||||||||| | | |||||||| || | || || | Sbjct 121834 GAAGACATCAGCAAGACCTTGAACACCAAGAGCAATAGGTCTGTGACGGAAGTTGGATTT 121893 Query 79491 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTAT 79550 | |||||||||| || || || || | || || || || || || ||| |||| | Sbjct 121894 CTTTGCTTCTGGAACTGGGTAGTAGTTGACCTCGATGATCTTGTTCAGGTTCTTGACCAC 121953 Query 79551 TACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA-------TCGTCCATCTATTACAA 79603 || | | || || | || || | || ||| | | || ||| | || Sbjct 121954 AACCTGGCAGACCTCGTGGAGCTTCTGGAAGTCATAGGTACCGTTGTTCATGT-CAACGT 122012 Query 79604 ACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 79663 | || | ||| | ||||||| ||||| || ||||||| | | | || | Sbjct 122013 AGGTGGGAAGCGCCATGGATGCCAAGTTACAGCAAGCGACCTCATCTGGTGCGGAGTACT 122072 Query 79664 GTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCT 79723 | || |||||||| ||||| | |||||| || | ||| | || || |||| Sbjct 122073 CGACAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTGGTTGCTCT 122132 Query 79724 TTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTA 79783 || ||| || |||||||| || || ||||| || | ||||| || | || | ||| | Sbjct 122133 TTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGGGCTTCGA 122192 Query 79784 TAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGACTTGTATCTCTT---TTCTCTT 79839 ||| | | ||| | | || | |||| | || | |||| | ||| || Sbjct 122193 GAATGGAGTACCA-AAGTTTCTGTGCCT---TGATGGTCTTGCGACCCTTGCCCTCAGCC 122248 Query 79840 TCGTA-TTGT-GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGAC 79897 || || || | ||||| | | ||||| || || || | ||||| | | || || | Sbjct 122249 TCATACTTCTCGTATAGAGCC--TCGAATTCATCACCATAGACATCTGCAAGACCTGGGC 122306 Query 79898 ATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAG 79955 | |||| || ||||||| | ||| |||| || ||| || || ||||| || || Sbjct 122307 ACTCGTTGGGGCACATCAGTGTCCATGTGCCAT--TCTTTTCAACACGCTTCATGAACAG 122364 Query 79956 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATT 80015 ||| || ||||| ||||| || ||||| | | | | || || || || ||| Sbjct 122365 ATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCTTGCCGTGATT 122424 Query 80016 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 80075 ||| ||||| ||| || | | || ||| | ||||| || || | ||| ||||| | Sbjct 122425 TTTTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAA 122484 Query 80076 AACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 80135 | || ||||| |||||||| ||||| || | ||||| || ||||| || | ||||| Sbjct 122485 TGCACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAACACTCT 122544 Query 80136 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGC 80195 | ||| |||| ||||| ||||| | || || || || | || || ||| |||| Sbjct 122545 GAGCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTGGC 122604 Query 80196 ACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 80251 ||||| | || |||| ||||| || || || || | |||||||| | || | Sbjct 122605 TCGAATTCTGTGGAC--ATTG--AGACCGATACCACCAGCATTCTTAGAGATCATGGCAC 122660 Query 80252 ATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAAC 80311 | || | ||| || ||||| || || || |||||||| |||||| || || || | Sbjct 122661 AAGTCTTGAGCGTGTCGTAGATACCATCAATACTATCATCCTTCATGTCAATTAAGAAGC 122720 Query 80312 AGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 80370 | ||| | || ||| | | || || ||| || | || || |||||||| || Sbjct 122721 ACGAAGAAAGTT-GTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGAAGCGTGTGTG 122779 Query 80371 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGA 80430 || |||| | |||| || || || |||||||| |||| || |||||| ||| Sbjct 122780 AAGTATTTGCCTGACATCAGGTTATATGTCTCAATTGCTGCCTCGATATCCTCGCCGTGA 122839 Query 80431 ATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATT 80490 || || || || |||||||| | ||||||||| || | ||| ||| ||| || | Sbjct 122840 ATGCCAACTGCTACACGCATGATCATGTGCTGCGGGCGTTCGCAGATTTTGCCATCGAGG 122899 Query 80491 TTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 80550 | | ||| ||| ||| | || || ||||| || || | ||| |||||||| Sbjct 122900 CGGAGAAGGTATGATCGTTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAGTCTCGA 122959 Query 80551 TCGTAAATAATAACCGAGTTGAGTT 80575 ||||| | |||| |||| ||||||| Sbjct 122960 TCGTAGACAATAGCCGAATTGAGTT 122984 >seq887 Length=503426 Score = 116 bits (128), Expect = 5e-21 Identities = 328/503 (65%), Gaps = 3/503 (1%) Strand=Plus/Minus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 |||||||| ||||| ||||| || || || || || || || || | | || || || Sbjct 202506 TTTTGGTAATCACCAACACGCTTCTCAAAGAAGTTTGTCTTGCCGGCAAGAGAGATGTTC 202447 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 |||||||| || || || |||| | || || | ||| | || | || | Sbjct 202446 TCCATGAAGTCGAATGGGTTGGCAGATTTGTAGACTTTGTCGTTGCCAAGGGCAAGGAGA 202387 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 | | ||| || ||||| || || ||| ||||||| | | ||||| || | ||| Sbjct 202386 AGACGATCAGCAACAAACTCAATGTATTGCTTCATCAGGTTGGAGTTCATGCCGAGAAGA 202327 Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908 | ||||||||| | || | ||| || || || || || || || || || | | Sbjct 202326 GCACAAGGAAGAGCCTCGGTCAAAAACTCCTGCTCGATTTCAACAGCCTCAGTGATGACA 202267 Query 49909 GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAA 49968 | ||| | || | || || ||||| || || || | | || || || Sbjct 202266 TCTTGAACTGCTTGCTTGCTTGGGCGATGCTTCAAGTGAGAGAAGAGGAGGCAAGCAAAG 202207 Query 49969 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 50028 || ||| ||||||||||| | | ||||| |||||||| || || ||||||| ||| Sbjct 202206 TCAGTGTGAAGACCCTCGTCACGAGAAATTAACTCGTTGGAGAAGGTAAGTCCGGCCATG 202147 Query 50029 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCT 50088 ||||||||||| || | ||| || || || || ||||| ||| |||||||| || || Sbjct 202146 AGGCCACGCTTCTTCAACCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATACCCTCA 202087 Query 50089 ACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG---GCGCTGTCATGTATCCACTTT 50145 || ||||| || ||||| | | || || | || | |||| || ||||| | Sbjct 202086 ACGGCGGCGAATGCAACCAAGCGCTGAGCAAATGTGGATGACTTGTCTTGGATCCATCGT 202027 Query 50146 TGAGCCCAATCGGCCTTCTTTTT 50168 |||||| ||||||||||| || Sbjct 202026 ACAGCCCAGTCGGCCTTCTTCTT 202004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718260495017000