Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq411 248 1e-60
seq887 116 5e-21
>seq411
Length=256942
Score = 248 bits (274), Expect = 1e-60
Identities = 1202/1885 (64%), Gaps = 45/1885 (2%)
Strand=Plus/Plus
Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777
||||| || ||||| || || || | | || || ||||||||||| || || || ||
Sbjct 121118 GTGAACTGGATGGGTGCCGAAGCAGCCATTGTTCGGAGATAGTACATCCCAGTCTTGAGG 121177
Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837
|| | |||| || ||||||||||| || | ||| | ||||| ||
Sbjct 121178 CCCAACTTCCAACCTGCAAAATGCATACTGGTGATCTTGCCCATTGTAGGATCCTTCATG 121237
Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897
||||| ||||| |||||| |||||| ||| | || || | || |||||||| | | |
Sbjct 121238 TGGATGTTCATTGATTGAGATTGATCAATGTAAGCACCACGATCGGCAGCCATCTGGACG 121297
Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957
|| || || | |||||||| | || || || | ||| || || |||||| |
Sbjct 121298 ATGGTACGCTGAGAGATTTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATG 121357
Query 78958 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014
|| | ||| ||||| || ||||||||||| || || |||||||| || | || |
Sbjct 121358 TTAGGAACATTTTGAATCGAACCACCATCTGCGATGATTCTATTCTTCATGTTGTCTGAC 121417
Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074
|||| | | || | | | | | | || || || ||||| || ||||||
Sbjct 121418 CATAGTCCCATATCAACAAGATCCTTCAACAACCATGGGTTGACGACTTGGAACTCTCCA 121477
Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134
| | || | |||| ||| || || ||| ||||| || | |||| || ||
Sbjct 121478 GCGAGCACACGACGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCATTCGTTGAACCCA 121537
Query 79135 AAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 79194
| ||||||| || || || |||||||| || || | ||||| || | | |||
Sbjct 121538 AGAATTTGACTGGTACTGGCAGTGGGCATAGGAGCAACAAGCAAACTGTTGCGGATACCA 121597
Query 79195 TATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTC 79254
||| |||||| | || ||||| ||||||||||| ||||||| || ||| |
Sbjct 121598 TATTGCTTGATTTGTTGCTTCAGAGAATCCCAATCCCAGAGATCAGTTGGAGTGACACCC 121657
Query 79255 CAAAGATCATATTGTAGAATACCGTTACTAG-CGTATGATCCTGTGTATGTTTCATAAGG 79313
|| | ||| ||||| || ||| || | || | ||||| |||||| || || ||
Sbjct 121658 CACATATCGTATTGAAGCTCACCCTT-CGAGACTGGAGATCCCTCGTATGTCTCGTATGG 121716
Query 79314 TCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAA 79373
||| ||| | || | ||| || || || ||| || || || || ||
Sbjct 121717 TCCAAGCTTCTTAGCGAGATCAACGGAAGCAGTCAAAGCGGCGTGGTAGATAGTCTCAAA 121776
Query 79374 AATCTTCTTATTGAGAT-CTTGTGCTTCTAGGCTA-TCAAATGGATAATTTAAGAG-AAT 79430
|||| | ||||||| |||| || || ||| | || ||||| | |||| |
Sbjct 121777 GATCTGGATGTTGAGATGCTTG-GCCTC-AGGTGACTCGAATGG-CAGACGCAGAGCCAA 121833
Query 79431 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAAT 79490
|| | || || | ||||||||||||| | | |||||||| || | || || |
Sbjct 121834 GAAGACATCAGCAAGACCTTGAACACCAAGAGCAATAGGTCTGTGACGGAAGTTGGATTT 121893
Query 79491 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTAT 79550
| |||||||||| || || || || | || || || || || || ||| |||| |
Sbjct 121894 CTTTGCTTCTGGAACTGGGTAGTAGTTGACCTCGATGATCTTGTTCAGGTTCTTGACCAC 121953
Query 79551 TACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA-------TCGTCCATCTATTACAA 79603
|| | | || || | || || | || ||| | | || ||| | ||
Sbjct 121954 AACCTGGCAGACCTCGTGGAGCTTCTGGAAGTCATAGGTACCGTTGTTCATGT-CAACGT 122012
Query 79604 ACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 79663
| || | ||| | ||||||| ||||| || ||||||| | | | || |
Sbjct 122013 AGGTGGGAAGCGCCATGGATGCCAAGTTACAGCAAGCGACCTCATCTGGTGCGGAGTACT 122072
Query 79664 GTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCT 79723
| || |||||||| ||||| | |||||| || | ||| | || || ||||
Sbjct 122073 CGACAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTGGTTGCTCT 122132
Query 79724 TTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTA 79783
|| ||| || |||||||| || || ||||| || | ||||| || | || | ||| |
Sbjct 122133 TTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGGGCTTCGA 122192
Query 79784 TAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGACTTGTATCTCTT---TTCTCTT 79839
||| | | ||| | | || | |||| | || | |||| | ||| ||
Sbjct 122193 GAATGGAGTACCA-AAGTTTCTGTGCCT---TGATGGTCTTGCGACCCTTGCCCTCAGCC 122248
Query 79840 TCGTA-TTGT-GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGAC 79897
|| || || | ||||| | | ||||| || || || | ||||| | | || || |
Sbjct 122249 TCATACTTCTCGTATAGAGCC--TCGAATTCATCACCATAGACATCTGCAAGACCTGGGC 122306
Query 79898 ATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAG 79955
| |||| || ||||||| | ||| |||| || ||| || || ||||| || ||
Sbjct 122307 ACTCGTTGGGGCACATCAGTGTCCATGTGCCAT--TCTTTTCAACACGCTTCATGAACAG 122364
Query 79956 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATT 80015
||| || ||||| ||||| || ||||| | | | | || || || || |||
Sbjct 122365 ATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCTTGCCGTGATT 122424
Query 80016 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 80075
||| ||||| ||| || | | || ||| | ||||| || || | ||| ||||| |
Sbjct 122425 TTTTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAA 122484
Query 80076 AACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 80135
| || ||||| |||||||| ||||| || | ||||| || ||||| || | |||||
Sbjct 122485 TGCACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAACACTCT 122544
Query 80136 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGC 80195
| ||| |||| ||||| ||||| | || || || || | || || ||| ||||
Sbjct 122545 GAGCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTGGC 122604
Query 80196 ACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 80251
||||| | || |||| ||||| || || || || | |||||||| | || |
Sbjct 122605 TCGAATTCTGTGGAC--ATTG--AGACCGATACCACCAGCATTCTTAGAGATCATGGCAC 122660
Query 80252 ATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAAC 80311
| || | ||| || ||||| || || || |||||||| |||||| || || || |
Sbjct 122661 AAGTCTTGAGCGTGTCGTAGATACCATCAATACTATCATCCTTCATGTCAATTAAGAAGC 122720
Query 80312 AGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 80370
| ||| | || ||| | | || || ||| || | || || |||||||| ||
Sbjct 122721 ACGAAGAAAGTT-GTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGAAGCGTGTGTG 122779
Query 80371 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGA 80430
|| |||| | |||| || || || |||||||| |||| || |||||| |||
Sbjct 122780 AAGTATTTGCCTGACATCAGGTTATATGTCTCAATTGCTGCCTCGATATCCTCGCCGTGA 122839
Query 80431 ATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATT 80490
|| || || || |||||||| | ||||||||| || | ||| ||| ||| || |
Sbjct 122840 ATGCCAACTGCTACACGCATGATCATGTGCTGCGGGCGTTCGCAGATTTTGCCATCGAGG 122899
Query 80491 TTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 80550
| | ||| ||| ||| | || || ||||| || || | ||| ||||||||
Sbjct 122900 CGGAGAAGGTATGATCGTTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAGTCTCGA 122959
Query 80551 TCGTAAATAATAACCGAGTTGAGTT 80575
||||| | |||| |||| |||||||
Sbjct 122960 TCGTAGACAATAGCCGAATTGAGTT 122984
>seq887
Length=503426
Score = 116 bits (128), Expect = 5e-21
Identities = 328/503 (65%), Gaps = 3/503 (1%)
Strand=Plus/Minus
Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728
|||||||| ||||| ||||| || || || || || || || || | | || || ||
Sbjct 202506 TTTTGGTAATCACCAACACGCTTCTCAAAGAAGTTTGTCTTGCCGGCAAGAGAGATGTTC 202447
Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788
|||||||| || || || |||| | || || | ||| | || | || |
Sbjct 202446 TCCATGAAGTCGAATGGGTTGGCAGATTTGTAGACTTTGTCGTTGCCAAGGGCAAGGAGA 202387
Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848
| | ||| || ||||| || || ||| ||||||| | | ||||| || | |||
Sbjct 202386 AGACGATCAGCAACAAACTCAATGTATTGCTTCATCAGGTTGGAGTTCATGCCGAGAAGA 202327
Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908
| ||||||||| | || | ||| || || || || || || || || || | |
Sbjct 202326 GCACAAGGAAGAGCCTCGGTCAAAAACTCCTGCTCGATTTCAACAGCCTCAGTGATGACA 202267
Query 49909 GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAA 49968
| ||| | || | || || ||||| || || || | | || || ||
Sbjct 202266 TCTTGAACTGCTTGCTTGCTTGGGCGATGCTTCAAGTGAGAGAAGAGGAGGCAAGCAAAG 202207
Query 49969 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 50028
|| ||| ||||||||||| | | ||||| |||||||| || || ||||||| |||
Sbjct 202206 TCAGTGTGAAGACCCTCGTCACGAGAAATTAACTCGTTGGAGAAGGTAAGTCCGGCCATG 202147
Query 50029 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCT 50088
||||||||||| || | ||| || || || || ||||| ||| |||||||| || ||
Sbjct 202146 AGGCCACGCTTCTTCAACCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATACCCTCA 202087
Query 50089 ACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG---GCGCTGTCATGTATCCACTTT 50145
|| ||||| || ||||| | | || || | || | |||| || ||||| |
Sbjct 202086 ACGGCGGCGAATGCAACCAAGCGCTGAGCAAATGTGGATGACTTGTCTTGGATCCATCGT 202027
Query 50146 TGAGCCCAATCGGCCTTCTTTTT 50168
|||||| ||||||||||| ||
Sbjct 202026 ACAGCCCAGTCGGCCTTCTTCTT 202004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718260495017000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |