Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq411 181 1e-40 seq887 105 9e-18 >seq411 Length=256942 Score = 181 bits (200), Expect = 1e-40 Identities = 458/690 (66%), Gaps = 10/690 (1%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCA 72031 || || || || || || ||||||| || ||| |||| || ||| || || |||| Sbjct 122300 CCTGGGCACTCGTTGGGGCACATCAGTGTCCATGTGCCAT--TCTTTTCAACACGCTTCA 122357 Query 72032 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTC 72091 | || ||||| || ||||| ||||| || ||||| | | | | || || || | Sbjct 122358 TGAACAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCTTGC 122417 Query 72092 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 72151 | ||| ||| ||||| ||| || | | || ||| | ||||| || || | ||| | Sbjct 122418 CGTGATTTTTTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTAGA 122477 Query 72152 TGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 72211 |||| | | || || || |||||||| ||||| || | ||||| || ||||| || Sbjct 122478 TGGCGAATGCACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGTTGA 122537 Query 72212 AAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTC 72271 | ||||| | ||| |||| ||||| ||||| || || || || | || || || Sbjct 122538 ACACTCTGAGCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTC 122597 Query 72272 CACTGGCACGAATATTGCTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329 | |||| ||||| || | |||| |||| || || || || | |||||||| | Sbjct 122598 CGGTGGCTCGAATTCTGTGGACATTGA--GACCGATACCACCAGCATTCTTAGAGATCAT 122655 Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 72389 || || || | ||| || ||||| || || |||||||||||| |||||| || || Sbjct 122656 GGCACAAGTCTTGAGCGTGTCGTAGATACCATCAATACTATCATCCTTCATGTCAATTAA 122715 Query 72390 AAAACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 72448 || || ||| | || ||| | | || || ||| || | || || ||||||| Sbjct 122716 GAAGCACGAAGAAAGTT-GTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGAAGCGT 122774 Query 72449 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 72508 | || || |||| | |||| || || || |||||||| |||| || |||||| Sbjct 122775 GTGTGAAGTATTTGCCTGACATCAGGTTATATGTCTCAATTGCTGCCTCGATATCCTCGC 122834 Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTAT 72568 || || || || || |||||||| | ||| ||||| || | ||| ||| ||| || Sbjct 122835 CGTGAATGCCAACTGCTACACGCATGATCATGTGCTGCGGGCGTTCGCAGATTTTGCCAT 122894 Query 72569 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 72628 | | | ||| ||| ||| | || || ||||| || || | ||| |||| Sbjct 122895 CGAGGCGGAGAAGGTATGATCGTTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAGT 122954 Query 72629 CTCGTTCGTAAATAATAACCGAATTGAGTT 72658 |||| ||||| | |||| |||||||||||| Sbjct 122955 CTCGATCGTAGACAATAGCCGAATTGAGTT 122984 Score = 107 bits (118), Expect = 3e-18 Identities = 348/535 (65%), Gaps = 13/535 (2%) Strand=Plus/Plus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || ||||| ||||| | || || || | || || ||||||||||| || || || || Sbjct 121118 GTGAACTGGATGGGTGCCGAAGCAGCCATTGTTCGGAGATAGTACATCCCAGTCTTGAGG 121177 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGCTAGGATCGGCTAT 70919 || | |||| || |||||||||||| || | ||| || | ||||||| || Sbjct 121178 CCCAACTTCCAACCTGCAAAATGCATACTGGTGATCTTGCCCATTG-TAGGATCCTTCAT 121236 Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979 ||| || ||||| || ||| |||||| ||| | || || | || |||||||| | | Sbjct 121237 GTGGATGTTCATTGATTGAGATTGATCAATGTAAGCACCACGATCGGCAGCCATCTGGAC 121296 Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039 ||| || || | |||||||| | || || || | ||| || || |||||| Sbjct 121297 GATGGTACGCTGAGAGATTTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAAT 121356 Query 71040 GTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096 ||| | ||| ||||| || ||||||||||| || || ||||| || || | || Sbjct 121357 GTTAGGAACATTTTGAATCGAACCACCATCTGCGATGATTCTATTCTTCATGTTGTCTGA 121416 Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156 ||||| | | || | | | | | | || || || ||||| || ||||| Sbjct 121417 CCATAGTCCCATATCAACAAGATCCTTCAACAACCATGGGTTGACGACTTGGAACTCTCC 121476 Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTT-- 71214 || | || | ||||| ||| || || ||| || || || || |||| || Sbjct 121477 AGCGAGCACACGACGAGAGTAGATGTTGGAGGTGTATGGCTC----GAAGCATTCGTTGA 121532 Query 71215 -CCCAA-AATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAA 71272 ||||| ||||||| || ||||| |||||||| || || | | ||| || | | Sbjct 121533 ACCCAAGAATTTGACTGGTACTGGCAGTGGGCATAGGAGCAACAAGCAAACTGTTGCGGA 121592 Query 71273 GACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGG 71327 ||||| | ||||| | || ||||| ||||||| ||| ||||| | ||| Sbjct 121593 TACCATATTGCTTGATTTGTTGCTTCAGAGAATCCCAATCCCAGAGATCAGTTGG 121647 >seq887 Length=503426 Score = 105 bits (116), Expect = 9e-18 Identities = 329/505 (65%), Gaps = 7/505 (1%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 |||||||| ||||| ||||| || || || || || ||||| || | | || || || Sbjct 202506 TTTTGGTAATCACCAACACGCTTCTCAAAGAAGTTTGTCTTGCCGGCAAGAGAGATGTTC 202447 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 |||||||| || || || |||| | || || | ||| | || | || | Sbjct 202446 TCCATGAAGTCGAATGGGTTGGCAGATTTGTAGACTTTGTCGTTGCCAAGGGCAAGGAGA 202387 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 | | ||| || | || || || ||| ||||||| | | ||||| || | ||| Sbjct 202386 AGACGATCAGCAACAAACTCAATGTATTGCTTCATCAGGTTGGAGTTCATGCCGAGAAGA 202327 Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 | ||||||||| | || | ||| || || || || || || || || || | | Sbjct 202326 GCACAAGGAAGAGCCTCGGTCAAAAACTCCTGCTCGATTTCAACAGCCTCAGTGATGACA 202267 Query 42014 GATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 42071 |||| |||| || | || || ||| | || || || | | || || | Sbjct 202266 --TCTTGAACTGCTTGCTTGCTTGGGCGATGCTTCAAGTGAGAGAAGAGGAGGCAAGCAA 202209 Query 42072 AATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 42131 | || ||| |||||||| || | | |||||| |||||||| || || ||||||| || Sbjct 202208 AGTCAGTGTGAAGACCCTCGTCACGAGAAATTAACTCGTTGGAGAAGGTAAGTCCGGCCA 202149 Query 42132 TTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTT 42191 | ||||||||||| || | ||| || ||||| || ||||| ||| |||||||| || | Sbjct 202148 TGAGGCCACGCTTCTTCAACCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATACCCT 202089 Query 42192 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG--CAC-TGTCATGTATCCACT 42248 | || || || || |||| | | || || | || || |||| || ||||| Sbjct 202088 CAACGGCGGCGAATGCAACCAAGCGCTGAGCAAATGTGGATGACTTGTCTTGGATCCATC 202029 Query 42249 TTTGAGCCCAATCGGCCTTCTTTTT 42273 | |||||| ||||||||||| || Sbjct 202028 GTACAGCCCAGTCGGCCTTCTTCTT 202004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671131439953000