Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq411 181 1e-40
seq887 105 9e-18
>seq411
Length=256942
Score = 181 bits (200), Expect = 1e-40
Identities = 458/690 (66%), Gaps = 10/690 (1%)
Strand=Plus/Plus
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCA 72031
|| || || || || || ||||||| || ||| |||| || ||| || || ||||
Sbjct 122300 CCTGGGCACTCGTTGGGGCACATCAGTGTCCATGTGCCAT--TCTTTTCAACACGCTTCA 122357
Query 72032 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTC 72091
| || ||||| || ||||| ||||| || ||||| | | | | || || || |
Sbjct 122358 TGAACAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCTTGC 122417
Query 72092 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 72151
| ||| ||| ||||| ||| || | | || ||| | ||||| || || | ||| |
Sbjct 122418 CGTGATTTTTTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTAGA 122477
Query 72152 TGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 72211
|||| | | || || || |||||||| ||||| || | ||||| || ||||| ||
Sbjct 122478 TGGCGAATGCACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGTTGA 122537
Query 72212 AAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTC 72271
| ||||| | ||| |||| ||||| ||||| || || || || | || || ||
Sbjct 122538 ACACTCTGAGCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTC 122597
Query 72272 CACTGGCACGAATATTGCTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329
| |||| ||||| || | |||| |||| || || || || | |||||||| |
Sbjct 122598 CGGTGGCTCGAATTCTGTGGACATTGA--GACCGATACCACCAGCATTCTTAGAGATCAT 122655
Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 72389
|| || || | ||| || ||||| || || |||||||||||| |||||| || ||
Sbjct 122656 GGCACAAGTCTTGAGCGTGTCGTAGATACCATCAATACTATCATCCTTCATGTCAATTAA 122715
Query 72390 AAAACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 72448
|| || ||| | || ||| | | || || ||| || | || || |||||||
Sbjct 122716 GAAGCACGAAGAAAGTT-GTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGAAGCGT 122774
Query 72449 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 72508
| || || |||| | |||| || || || |||||||| |||| || ||||||
Sbjct 122775 GTGTGAAGTATTTGCCTGACATCAGGTTATATGTCTCAATTGCTGCCTCGATATCCTCGC 122834
Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTAT 72568
|| || || || || |||||||| | ||| ||||| || | ||| ||| ||| ||
Sbjct 122835 CGTGAATGCCAACTGCTACACGCATGATCATGTGCTGCGGGCGTTCGCAGATTTTGCCAT 122894
Query 72569 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 72628
| | | ||| ||| ||| | || || ||||| || || | ||| ||||
Sbjct 122895 CGAGGCGGAGAAGGTATGATCGTTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAGT 122954
Query 72629 CTCGTTCGTAAATAATAACCGAATTGAGTT 72658
|||| ||||| | |||| ||||||||||||
Sbjct 122955 CTCGATCGTAGACAATAGCCGAATTGAGTT 122984
Score = 107 bits (118), Expect = 3e-18
Identities = 348/535 (65%), Gaps = 13/535 (2%)
Strand=Plus/Plus
Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860
|| ||||| ||||| | || || || | || || ||||||||||| || || || ||
Sbjct 121118 GTGAACTGGATGGGTGCCGAAGCAGCCATTGTTCGGAGATAGTACATCCCAGTCTTGAGG 121177
Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGCTAGGATCGGCTAT 70919
|| | |||| || |||||||||||| || | ||| || | ||||||| ||
Sbjct 121178 CCCAACTTCCAACCTGCAAAATGCATACTGGTGATCTTGCCCATTG-TAGGATCCTTCAT 121236
Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979
||| || ||||| || ||| |||||| ||| | || || | || |||||||| | |
Sbjct 121237 GTGGATGTTCATTGATTGAGATTGATCAATGTAAGCACCACGATCGGCAGCCATCTGGAC 121296
Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039
||| || || | |||||||| | || || || | ||| || || ||||||
Sbjct 121297 GATGGTACGCTGAGAGATTTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAAT 121356
Query 71040 GTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096
||| | ||| ||||| || ||||||||||| || || ||||| || || | ||
Sbjct 121357 GTTAGGAACATTTTGAATCGAACCACCATCTGCGATGATTCTATTCTTCATGTTGTCTGA 121416
Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156
||||| | | || | | | | | | || || || ||||| || |||||
Sbjct 121417 CCATAGTCCCATATCAACAAGATCCTTCAACAACCATGGGTTGACGACTTGGAACTCTCC 121476
Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTT-- 71214
|| | || | ||||| ||| || || ||| || || || || |||| ||
Sbjct 121477 AGCGAGCACACGACGAGAGTAGATGTTGGAGGTGTATGGCTC----GAAGCATTCGTTGA 121532
Query 71215 -CCCAA-AATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAA 71272
||||| ||||||| || ||||| |||||||| || || | | ||| || | |
Sbjct 121533 ACCCAAGAATTTGACTGGTACTGGCAGTGGGCATAGGAGCAACAAGCAAACTGTTGCGGA 121592
Query 71273 GACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGG 71327
||||| | ||||| | || ||||| ||||||| ||| ||||| | |||
Sbjct 121593 TACCATATTGCTTGATTTGTTGCTTCAGAGAATCCCAATCCCAGAGATCAGTTGG 121647
>seq887
Length=503426
Score = 105 bits (116), Expect = 9e-18
Identities = 329/505 (65%), Gaps = 7/505 (1%)
Strand=Plus/Minus
Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833
|||||||| ||||| ||||| || || || || || ||||| || | | || || ||
Sbjct 202506 TTTTGGTAATCACCAACACGCTTCTCAAAGAAGTTTGTCTTGCCGGCAAGAGAGATGTTC 202447
Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893
|||||||| || || || |||| | || || | ||| | || | || |
Sbjct 202446 TCCATGAAGTCGAATGGGTTGGCAGATTTGTAGACTTTGTCGTTGCCAAGGGCAAGGAGA 202387
Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953
| | ||| || | || || || ||| ||||||| | | ||||| || | |||
Sbjct 202386 AGACGATCAGCAACAAACTCAATGTATTGCTTCATCAGGTTGGAGTTCATGCCGAGAAGA 202327
Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013
| ||||||||| | || | ||| || || || || || || || || || | |
Sbjct 202326 GCACAAGGAAGAGCCTCGGTCAAAAACTCCTGCTCGATTTCAACAGCCTCAGTGATGACA 202267
Query 42014 GATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 42071
|||| |||| || | || || ||| | || || || | | || || |
Sbjct 202266 --TCTTGAACTGCTTGCTTGCTTGGGCGATGCTTCAAGTGAGAGAAGAGGAGGCAAGCAA 202209
Query 42072 AATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 42131
| || ||| |||||||| || | | |||||| |||||||| || || ||||||| ||
Sbjct 202208 AGTCAGTGTGAAGACCCTCGTCACGAGAAATTAACTCGTTGGAGAAGGTAAGTCCGGCCA 202149
Query 42132 TTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTT 42191
| ||||||||||| || | ||| || ||||| || ||||| ||| |||||||| || |
Sbjct 202148 TGAGGCCACGCTTCTTCAACCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATACCCT 202089
Query 42192 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG--CAC-TGTCATGTATCCACT 42248
| || || || || |||| | | || || | || || |||| || |||||
Sbjct 202088 CAACGGCGGCGAATGCAACCAAGCGCTGAGCAAATGTGGATGACTTGTCTTGGATCCATC 202029
Query 42249 TTTGAGCCCAATCGGCCTTCTTTTT 42273
| |||||| ||||||||||| ||
Sbjct 202028 GTACAGCCCAGTCGGCCTTCTTCTT 202004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671131439953000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |