Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq411 134 2e-26 seq887 129 9e-25 >seq411 Length=256942 Score = 134 bits (148), Expect = 2e-26 Identities = 351/530 (66%), Gaps = 4/530 (1%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 |||||||||||| ||| || | || || ||||||||| ||| ||| || || || | Sbjct 122580 ACAAACGGCAACTCCAACGGTATCGTTCCTATGCTCAGAGTGTTCAACAACACTGCCA-G 122522 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 ||| ||| ||||| || || || || || || || | ||| ||||| | || || || Sbjct 122521 ATATGTTGACCAGGGTGGAAACAAGCGACCTGGTGCATTCGCCATCTACCTCGAGCCATG 122462 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| || ||||| || | | || | || ||||| ||| ||||| | || Sbjct 122461 GCACGCAGATGTTTTCGAGTACCTTGATCTCCGAAAAAATCACGGCAAGGAAGAAGTTCG 122402 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 || | || | || || || |||||| | |||||| ||||||||||||| || | | Sbjct 122401 CGCTCGTGATCTCTTCTACGCTCTCTGGATCCCAGATCTGTTCATGAAGCGTGTTGAAAA 122342 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 |||| |||| || ||||||||| || || || ||||| | ||| || || Sbjct 122341 GAATGGCACATGGACACTGATGTGCCCCAACGAGTGCCCAGGTCTTGCAGATGTCTATGG 122282 Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAG 97164 || || || ||||| ||| | || ||| |||||| | || |||| | Sbjct 122281 TGATGAATTCGAGGCTCTATACGAGAAGTATGAGGCTGAGGGCAAGGGTCGCAAGACCA- 122223 Query 97165 TCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224 || | |||| |||| ||| | |||| | || || |||||||||| || | Sbjct 122222 TCAAGGCACAGAAACTTTGGTACTCCATTCTCGAAGCCCAAACCGAGACTGGAAACCCCT 122163 Query 97225 ACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCA 97284 ||| |||||||||||| | || || || |||||||| | | || ||||| Sbjct 122162 TCATGCTCTACAAGGATGCTTGCAACCGAAAGAGCAACCAGAAGAATCTCGGTACCATTC 122103 Query 97285 AGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 ||||||| |||||||| || ||||| |||||| || | || || ||| Sbjct 122102 GAAGCTCCAACCTGTGCACTGAGATTGTCGAGTACTCCGCACCAGATGAG 122053 >seq887 Length=503426 Score = 129 bits (142), Expect = 9e-25 Identities = 188/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| |||| || || ||||| | || ||| | || ||| Sbjct 201611 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCATTCTGGACCGCAGAGGAGATTGACCTG 201670 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||||| | || ||| | | | | ||| |||||| | || || || Sbjct 201671 TCCAAGGACCTTCATGACTGGAACAACAAACTCAATGATGACGAGCGATACTTCATTTCT 201730 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| || | |||||||| |||| ||||||||| || || ||||| || || | || Sbjct 201731 CACGTTCTTGCCTTCTTCGCCGCCTCCGATGGTATTGTTAACGAGAACTTGGTCGAGCGC 201790 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 ||| | ||| | |||||||||| |||||| |||||||||||||||||||| Sbjct 201791 TTCAGTGGAGAAGTCCAAATTCCAGAGGCACGGTGCTTCTACGGATTCCAAATCATGATG 201850 Query 125259 GAGAACGTGCACTCGGAAATGTACTC 125284 |||||| | ||||| || | ||||| Sbjct 201851 GAGAACATCCACTCCGAGACATACTC 201876 Score = 109 bits (120), Expect = 8e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 |||| |||||||||||||| ||||| |||||||| ||| || || | ||||| | Sbjct 202068 TGGTTGCATTCGCCGCCGTTGAGGGTATCTTCTTCAGTGGTTCATTCGCCTCTATCTTCT 202127 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547 || | |||||||| || |||||| ||||||| || | |||||||| || ||||| | Sbjct 202128 GGTTGAAGAAGCGTGGCCTCATGGCCGGACTTACCTTCTCCAACGAGTTAATTTCTCGTG 202187 Query 125548 ACGAGGGCCTACACTGTGACTTTGC 125572 ||||||| || ||| ||||||||| Sbjct 202188 ACGAGGGTCTTCACACTGACTTTGC 202212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741050631503000