Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq112 93.3 1e-13
seq887 84.2 5e-11
>seq112
Length=719005
Score = 93.3 bits (102), Expect = 1e-13
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473
|| || ||||| || || | | ||| || || || || || || || ||||||||||||
Sbjct 201973 TGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGAATACCCTCCTTATCCTGAATC 202032
Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533
|||| || ||||| || | || ||| | || ||||||| |||||||||||| |||
Sbjct 202033 TTTGACTTAACATTATCAATTGTGTCGGATGACTCAACCTCTAATGTAATAGTCTTTCCA 202092
Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559
|| | || || ||||| ||||||||
Sbjct 202093 GTCAAAGTCTTCACAAAGATCTGCAT 202118
>seq887
Length=503426
Score = 84.2 bits (92), Expect = 5e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 269135 TTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTT 269194
|| ||||| || ||||| || || ||||| ||||| || || || ||| |||||||
Sbjct 202067 TTGGTTGCATTCGCCGCCGTTGAGGGTATCTTCTTCAGTGGTTCATTCGCCTCTATCTTC 202126
Query 269195 TGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGG 269254
||||||||||| | ||||| ||| | ||| | || ||||| ||||| || || |
Sbjct 202127 TGGTTGAAGAAGCGTGGCCTCATGGCCGGACTTACCTTCTCCAACGAGTTAATTTCTCGT 202186
Query 269255 GACGAAGGTTTACACTGCGACTTCGCTTG 269283
||||| ||| | ||| ||||| |||||
Sbjct 202187 GACGAGGGTCTTCACACTGACTTTGCTTG 202215
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151384754129900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |