Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq112 93.3 1e-13 seq887 84.2 5e-11 >seq112 Length=719005 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || ||||| || || | | ||| || || || || || || || |||||||||||| Sbjct 201973 TGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGAATACCCTCCTTATCCTGAATC 202032 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 |||| || ||||| || | || ||| | || ||||||| |||||||||||| ||| Sbjct 202033 TTTGACTTAACATTATCAATTGTGTCGGATGACTCAACCTCTAATGTAATAGTCTTTCCA 202092 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || | || || ||||| |||||||| Sbjct 202093 GTCAAAGTCTTCACAAAGATCTGCAT 202118 >seq887 Length=503426 Score = 84.2 bits (92), Expect = 5e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 269135 TTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTT 269194 || ||||| || ||||| || || ||||| ||||| || || || ||| ||||||| Sbjct 202067 TTGGTTGCATTCGCCGCCGTTGAGGGTATCTTCTTCAGTGGTTCATTCGCCTCTATCTTC 202126 Query 269195 TGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGG 269254 ||||||||||| | ||||| ||| | ||| | || ||||| ||||| || || | Sbjct 202127 TGGTTGAAGAAGCGTGGCCTCATGGCCGGACTTACCTTCTCCAACGAGTTAATTTCTCGT 202186 Query 269255 GACGAAGGTTTACACTGCGACTTCGCTTG 269283 ||||| ||| | ||| ||||| ||||| Sbjct 202187 GACGAGGGTCTTCACACTGACTTTGCTTG 202215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151384754129900