Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq112 95.1 1e-14 >seq112 Length=719005 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| || || ||||||||||||||||| |||||||| || ||| || | ||| Sbjct 201907 AACACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAACGTACGGCCATCC 201966 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 |||| |||||| || || | || || |||||||| || || | || ||||| ||| Sbjct 201967 TCCAACTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGAATACCCTCCTTATCC 202026 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||| || ||| | | | || || |||| ||||| ||| | ||| || || Sbjct 202027 TGAATCTTTGACTTAACATTATCAATTGTGTCGGATGACTCAACCTCTAATGTAATAGTC 202086 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || | ||| |||||||| |||||||| Sbjct 202087 TTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 202118 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || |||||||| ||| ||||||||| ||||||||||||| | || ||||||| Sbjct 202647 ACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGACCGTCCTCG 202706 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| || |||| ||||| ||||||||| || | | ||||||||| | Sbjct 202707 AGCTGCTTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCTTGA 202766 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || |||| | | || || || | |||||| ||| | || ||||| || Sbjct 202767 ATCTTGGATTTGACATTGTCGATAGTGTCAGAAGACTCTACCTCAAGAGTGATGGTCTTC 202826 Query 48698 CCGGTGA 48704 || |||| Sbjct 202827 CCAGTGA 202833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421246451050925