Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq112 113 4e-20
seq61 91.5 1e-13
>seq112
Length=719005
Score = 113 bits (124), Expect = 4e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||||||||||||||| || |||||||| | ||| || ||||||| || | |
Sbjct 201904 CGCAACACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAACGTACGGCCA 201963
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||||| ||| || || | ||||| |||| ||||| ||||| |||||||| || ||
Sbjct 201964 TCCTCCAACTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGAATACCCTCCTTA 202023
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | ||| |||| ||| || | | ||||| | || || || | || ||
Sbjct 202024 TCCTGAATCTTTGACTTAACATTATCAATTGTGTCGGATGACTCAACCTCTAATGTAATA 202083
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| |||||||| | ||| |||||||||||||||||
Sbjct 202084 GTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 202118
>seq61
Length=91600
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838
||||||| | || |||| || | || | ||| || ||||| || | ||| || |||
Sbjct 26019 CTCCTCCACGCAGACGCAGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGG 25960
Query 94839 TCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898
| ||| | || || || || || || | ||||||| | |||||| || || |
Sbjct 25959 AGAGGGTGCGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTG 25900
Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958
|||| ||||| ||||| | ||| || | |||||| | ||| ||||| | || |
Sbjct 25899 GAATGCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAA 25840
Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
| || | ||||||||||| || || || || || |||||||||||||||
Sbjct 25839 CCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCATG 25790
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448286016633000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |