Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq2 114 2e-21
seq567 104 4e-18
>seq2
Length=498183
Score = 114 bits (126), Expect = 2e-21
Identities = 208/317 (66%), Gaps = 52/317 (16%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| |||| ||| ||| ||||| ||||||||||| ||||| ||||| || ||
Sbjct 367096 GCCAAGCGTCACCGCAAGAT-TCTCCGAGACAACATCCAAGGTATCACAAAGCCTGCGAT 367154
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGG------------------ 16533
||| ||||| || ||||||||||| ||||||||| |||| |
Sbjct 367155 CCGACGTCTCGCGCGTCGTGGTGGTGTCAAGCGTATCTCAGCCAGTAAGTCACCTTCATC 367214
Query 16534 --------------------------------ATTGGTCTATGAAGAGATTCGTGATGTT 16561
| || |||| || |||| |||| ||||
Sbjct 367215 GGTTCGCAGGTGCCTCATTCTAACGCGTGTTCAGTGATCTACGAGGAGACCCGTGGTGTT 367274
Query 16562 TTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAA 16621
| |||| ||||||| || || |||| ||| ||| || |||||| || ||||||||
Sbjct 367275 CTCAAGACCTTCCTCGAGGGTGTCATCCGTGACGCTGTCACCTATACAGAACACGCTAAG 367334
Query 16622 CGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATT 16681
|| ||||||||||| || | ||| | ||||| || | || || |||||||||| | |
Sbjct 367335 CGCAAGACTGTCACTTCTCTCGATGTTGTCTACGCCCTCAAGCGCCAAGGCCGTACGCTC 367394
Query 16682 TATGGTTTTGGAAGTTA 16698
|||||||| || ||||
Sbjct 367395 TATGGTTTCGGTGGTTA 367411
>seq567
Length=221614
Score = 104 bits (114), Expect = 4e-18
Identities = 117/157 (75%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| ||||||| ||||| ||||||||| | |||||| || ||||||| |||||
Sbjct 218832 TGATCTACGAAGAGACTCGTGGTGTTTTGAAAACCTTCCTAGAGGGTGTTATCCGTGATG 218773
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || ||| || || ||||| || || ||||||||||| || | ||| ||||||| |
Sbjct 218772 CAGTCACCTACACAGAACACGCCAAGCGCAAGACTGTCACTTCTCTCGATGTCGTCTACG 218713
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|||| || | ||||| || | | || ||||| ||
Sbjct 218712 CATTAAAGAGACAAGGTCGCACACTATACGGTTTCGG 218676
Score = 100 bits (110), Expect = 4e-17
Identities = 83/99 (84%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| |||| ||| |||||| |||||||||||||| ||||| ||||| || ||
Sbjct 218991 GCCAAGCGTCACCGCAAGAT-TCTTCGTGATAACATCCAAGGTATCACAAAGCCTGCGAT 218933
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
| | ||||| || |||||||| || ||||||||| ||||
Sbjct 218932 CAGACGTCTCGCGCGTCGTGGCGGTGTCAAGCGTATCTC 218894
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074354266025
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |