Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2 114 2e-21 seq567 104 4e-18 >seq2 Length=498183 Score = 114 bits (126), Expect = 2e-21 Identities = 208/317 (66%), Gaps = 52/317 (16%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| ||| ||||| ||||||||||| ||||| ||||| || || Sbjct 367096 GCCAAGCGTCACCGCAAGAT-TCTCCGAGACAACATCCAAGGTATCACAAAGCCTGCGAT 367154 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGG------------------ 16533 ||| ||||| || ||||||||||| ||||||||| |||| | Sbjct 367155 CCGACGTCTCGCGCGTCGTGGTGGTGTCAAGCGTATCTCAGCCAGTAAGTCACCTTCATC 367214 Query 16534 --------------------------------ATTGGTCTATGAAGAGATTCGTGATGTT 16561 | || |||| || |||| |||| |||| Sbjct 367215 GGTTCGCAGGTGCCTCATTCTAACGCGTGTTCAGTGATCTACGAGGAGACCCGTGGTGTT 367274 Query 16562 TTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAA 16621 | |||| ||||||| || || |||| ||| ||| || |||||| || |||||||| Sbjct 367275 CTCAAGACCTTCCTCGAGGGTGTCATCCGTGACGCTGTCACCTATACAGAACACGCTAAG 367334 Query 16622 CGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATT 16681 || ||||||||||| || | ||| | ||||| || | || || |||||||||| | | Sbjct 367335 CGCAAGACTGTCACTTCTCTCGATGTTGTCTACGCCCTCAAGCGCCAAGGCCGTACGCTC 367394 Query 16682 TATGGTTTTGGAAGTTA 16698 |||||||| || |||| Sbjct 367395 TATGGTTTCGGTGGTTA 367411 >seq567 Length=221614 Score = 104 bits (114), Expect = 4e-18 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| ||||| ||||||||| | |||||| || ||||||| ||||| Sbjct 218832 TGATCTACGAAGAGACTCGTGGTGTTTTGAAAACCTTCCTAGAGGGTGTTATCCGTGATG 218773 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| || || ||||| || || ||||||||||| || | ||| ||||||| | Sbjct 218772 CAGTCACCTACACAGAACACGCCAAGCGCAAGACTGTCACTTCTCTCGATGTCGTCTACG 218713 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| || | ||||| || | | || ||||| || Sbjct 218712 CATTAAAGAGACAAGGTCGCACACTATACGGTTTCGG 218676 Score = 100 bits (110), Expect = 4e-17 Identities = 83/99 (84%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| |||||||||||||| ||||| ||||| || || Sbjct 218991 GCCAAGCGTCACCGCAAGAT-TCTTCGTGATAACATCCAAGGTATCACAAAGCCTGCGAT 218933 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 | | ||||| || |||||||| || ||||||||| |||| Sbjct 218932 CAGACGTCTCGCGCGTCGTGGCGGTGTCAAGCGTATCTC 218894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074354266025