Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq411 199 5e-46
seq887 105 8e-18
>seq411
Length=256942
Score = 199 bits (220), Expect = 5e-46
Identities = 1196/1895 (63%), Gaps = 65/1895 (3%)
Strand=Plus/Plus
Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054
||||| || ||||| || || || | | || || ||||||||||| || || || ||
Sbjct 121118 GTGAACTGGATGGGTGCCGAAGCAGCCATTGTTCGGAGATAGTACATCCCAGTCTTGAGG 121177
Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114
|| | |||| || |||||||||||| || | ||| | ||||| ||
Sbjct 121178 CCCAACTTCCAACCTGCAAAATGCATACTGGTGATCTTGCCCATTGTAGGATCCTTCATG 121237
Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174
||||| ||||| |||||| |||||| ||| | || || | || |||||||| | | |
Sbjct 121238 TGGATGTTCATTGATTGAGATTGATCAATGTAAGCACCACGATCGGCAGCCATCTGGACG 121297
Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234
|| || || | |||||||| | || || || | ||| || || |||||| |
Sbjct 121298 ATGGTACGCTGAGAGATTTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATG 121357
Query 62235 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291
|| | ||| ||||| || ||||||||||| || || |||||||| || | || |
Sbjct 121358 TTAGGAACATTTTGAATCGAACCACCATCTGCGATGATTCTATTCTTCATGTTGTCTGAC 121417
Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351
|||| | | || | | | | | | || || || ||||| || ||||||
Sbjct 121418 CATAGTCCCATATCAACAAGATCCTTCAACAACCATGGGTTGACGACTTGGAACTCTCCA 121477
Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTT--- 62408
| | || | |||| ||| || || ||| || || | ||| |||| ||
Sbjct 121478 GCGAGCACACGACGAGAGTAGATGTTGGAGGTGTATGGCT----CGAAGCATTCGTTGAA 121533
Query 62409 CCCAA-AATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAG 62467
||||| ||||||| || ||||| |||||||| || || | ||||| || | |
Sbjct 121534 CCCAAGAATTTGACTGGTACTGGCAGTGGGCATAGGAGCAACAAGCAAACTGTTGCGGAT 121593
Query 62468 ACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAAC 62527
||| ||| |||||| | || |||| ||||||| ||| ||||| | || ||
Sbjct 121594 ACCATATTGCTTGATTTGTTGCTTCAGAGAATCCCAATCCCAGAGATCAGTTGGAGTGAC 121653
Query 62528 NNNNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTAT 62583
||| || ||| || ||||| ||||| | ||||| |
Sbjct 121654 ACCCCACATATCGTATTGAAGCTCACCCTTCGAGACTGG----AGATCCCTCGTATGTCT 121709
Query 62584 CGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGG 62643
|||||||||| ||||| ||| || ||| || || || ||| || || |
Sbjct 121710 CGTATGGTCCAAGCTTCTTAGCGAGATCAACGGAAGCAGTCAAAGCGGCGTGGTAGATAG 121769
Query 62644 TTTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTA-TCAAATGGATAATTTAA 62701
| || ||||||| | || |||| |||| || |||| | || ||||| | |
Sbjct 121770 TCTCAAAGATCTGGATGTTGAGATGCTTGGCCT--CAGGTGACTCGAATGG-CAGACGCA 121826
Query 62702 GAG-AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62760
||| | || | || || | ||||||||||||| | | |||||||| || | |
Sbjct 121827 GAGCCAAGAAGACATCAGCAAGACCTTGAACACCAAGAGCAATAGGTCTGTGACGGAAGT 121886
Query 62761 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62820
| || | | |||||||||| || || || || | || || || || || || ||
Sbjct 121887 TGGATTTCTTTGCTTCTGGAACTGGGTAGTAGTTGACCTCGATGATCTTGTTCAGGTTCT 121946
Query 62821 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATTACA- 62879
|||| | || | | || || | || || | || ||| | || | | || ||
Sbjct 121947 TGACCACAACCTGGCAGACCTCGTGGAGCTTCTGGAAGTCATAGGTACCGT-TGTT-CAT 122004
Query 62880 ---AAC--ATGT-TCAAG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC 62932
||| | || ||| || | ||||||| ||||| || ||||||| | |
Sbjct 122005 GTCAACGTAGGTGGGAAGCGCCATGGATGCCAAGTTACAGCAAGCGACCTCATCTGGTGC 122064
Query 62933 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTG 62992
| || | | ||||||||||| || || | || || || | ||| | ||
Sbjct 122065 GGAGTACTCGACAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTG 122124
Query 62993 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 63052
|| |||||| ||| || |||||||| || || ||||| || | ||||| || | ||
Sbjct 122125 GTTGCTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTG 122184
Query 63053 AGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTT 63111
| ||| | ||| | | ||| | | || | |||| | || | ||| | ||||
Sbjct 122185 GGCTTCGAGAATGGAGTACCA-AAGTTTCTGTGCCT---TGATGGTCTTGCGAC-CCTTG 122239
Query 63112 CTCT----TTCGTA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 63165
| || || || | ||||| | | ||||| || || || | |||| | |
Sbjct 122240 CCCTCAGCCTCATACTTCTCGTATAGAGCC--TCGAATTCATCACCATAGACATCTGCAA 122297
Query 63166 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT---CACTCGTT 63222
|| || || || | || ||||||| | ||| | | ||| ||| || || |
Sbjct 122298 GACCTGGGCACTCGTTGGGGCACATCAGTGTCCA---TGTGCCATTCTTTTCAACACGCT 122354
Query 63223 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63282
|||| || ||||| || ||||| ||||| || ||||| | | | | ||| || |
Sbjct 122355 TCATGAACAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCT 122414
Query 63283 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63342
| || ||| ||| ||||| ||| || | | || ||| | ||||| || || | ||
Sbjct 122415 TGCCGTGATTTTTTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGT 122474
Query 63343 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63402
| ||||| | | ||||| || |||||||| ||||| || | ||||| || ||||| |
Sbjct 122475 AGATGGCGAATGCACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGT 122534
Query 63403 TATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGC 63462
| | ||||| | ||| |||| |||||||| || | || || || || | || ||
Sbjct 122535 TGAACACTCTGAGCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAG 122594
Query 63463 TTCCACTGGCACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63518
||| |||| ||||| | || |||| ||||| || || || || | ||||||
Sbjct 122595 CTCCGGTGGCTCGAATTCTGTGGAC--ATTG--AGACCGATACCACCAGCATTCTTAGAG 122650
Query 63519 ATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTA 63578
|| | || || || | |||||| |||||||| || || |||||||| |||||| |
Sbjct 122651 ATCATGGCACAAGTCTTGAGCGTGTCGTAGATACCATCAATACTATCATCCTTCATGTCA 122710
Query 63579 AGTAGAAAACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGA 63637
| || || || ||| | || ||| | | || || ||| || | || || ||
Sbjct 122711 ATTAAGAAGCACGAAGAAAGTT-GTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGA 122769
Query 63638 AGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC 63697
|||||| || || |||| | || | || || || |||||||| |||| || |||||
Sbjct 122770 AGCGTGTGTGAAGTATTTGCCTGACATCAGGTTATATGTCTCAATTGCTGCCTCGATATC 122829
Query 63698 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 63757
| ||||| || ||||| |||||||| | ||||||||| || | ||| ||| ||
Sbjct 122830 CTCGCCGTGAATGCCAACTGCTACACGCATGATCATGTGCTGCGGGCGTTCGCAGATTTT 122889
Query 63758 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 63817
| | | | | ||| ||| ||| | || || ||||| || || | |||
Sbjct 122890 GCCATCGAGGCGGAGAAGGTATGATCGTTCGAGGGTCTTGAAACCGAAGTATTGGTAGTT 122949
Query 63818 AAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTT 63852
|||||||| ||||| | |||| |||| |||||||
Sbjct 122950 GAAGTCTCGATCGTAGACAATAGCCGAATTGAGTT 122984
>seq887
Length=503426
Score = 105 bits (116), Expect = 8e-18
Identities = 285/436 (65%), Gaps = 0/436 (0%)
Strand=Plus/Minus
Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072
|||||||| ||||| ||||| || || || || || || || || | | || || ||
Sbjct 202506 TTTTGGTAATCACCAACACGCTTCTCAAAGAAGTTTGTCTTGCCGGCAAGAGAGATGTTC 202447
Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132
|||||||| || || || |||| | || || | ||| | || | || |
Sbjct 202446 TCCATGAAGTCGAATGGGTTGGCAGATTTGTAGACTTTGTCGTTGCCAAGGGCAAGGAGA 202387
Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192
| | ||| || || || || || ||| ||||||| | | ||||| || | |||
Sbjct 202386 AGACGATCAGCAACAAACTCAATGTATTGCTTCATCAGGTTGGAGTTCATGCCGAGAAGA 202327
Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252
| ||||||||| | || | ||| || || || || || || || || || | |
Sbjct 202326 GCACAAGGAAGAGCCTCGGTCAAAAACTCCTGCTCGATTTCAACAGCCTCAGTGATGACA 202267
Query 33253 GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAA 33312
| ||| | || | || || ||||| || || || | | || || ||
Sbjct 202266 TCTTGAACTGCTTGCTTGCTTGGGCGATGCTTCAAGTGAGAGAAGAGGAGGCAAGCAAAG 202207
Query 33313 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 33372
|| ||| ||||||||||| | | ||||| |||||||| || || ||||||| |||
Sbjct 202206 TCAGTGTGAAGACCCTCGTCACGAGAAATTAACTCGTTGGAGAAGGTAAGTCCGGCCATG 202147
Query 33373 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCT 33432
||||||||||| || | ||| || || || |||||||| ||| |||||||| || ||
Sbjct 202146 AGGCCACGCTTCTTCAACCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATACCCTCA 202087
Query 33433 ACTGCAGCAAAGGCAA 33448
|| || || || ||||
Sbjct 202086 ACGGCGGCGAATGCAA 202071
Score = 84.2 bits (92), Expect = 3e-11
Identities = 196/294 (67%), Gaps = 5/294 (2%)
Strand=Plus/Minus
Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624
|| |||| || ||||||||||| || || | || || || ||||| || ||
Sbjct 201903 TCCTTAATGTATGTATCGATCAACAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATG 201844
Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684
|| || ||||||||||| || | ||||| | ||| || |||||| || || || ||
Sbjct 201843 ATTTGGAATCCGTAGAAGCACCGTGCCTCTGGAATTTGGACTTCTCCACTGAAGCGCTCG 201784
Query 33685 GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33744
|||| || || || || || || || ||| || || || || | || || ||
Sbjct 201783 ACCAAGTTCTCGTTAACAATACCATCGGAGGCGGCGAAGAAGGCAAGAACGTGAGAAATG 201724
Query 33745 AAATATTTTTCGTC----TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATC 33800
|| ||| ||||| | | ||| | || ||||| |||| | || || || | ||
Sbjct 201723 AAGTATCGCTCGTCATCATTGAGTTTG-TTGTTCCAGTCATGAAGGTCCTTGGACAGGTC 201665
Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854
| || || | ||||| ||||||||||| ||||| || ||||| | ||||||
Sbjct 201664 AATCTCCTCTGCGGTCCAGAATGATGCCTCGGCCTTCTTGTACATCTGCCAGAT 201611
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622939997173000
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