Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq411 199 5e-46 seq887 105 8e-18 >seq411 Length=256942 Score = 199 bits (220), Expect = 5e-46 Identities = 1196/1895 (63%), Gaps = 65/1895 (3%) Strand=Plus/Plus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 ||||| || ||||| || || || | | || || ||||||||||| || || || || Sbjct 121118 GTGAACTGGATGGGTGCCGAAGCAGCCATTGTTCGGAGATAGTACATCCCAGTCTTGAGG 121177 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || | |||| || |||||||||||| || | ||| | ||||| || Sbjct 121178 CCCAACTTCCAACCTGCAAAATGCATACTGGTGATCTTGCCCATTGTAGGATCCTTCATG 121237 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 ||||| ||||| |||||| |||||| ||| | || || | || |||||||| | | | Sbjct 121238 TGGATGTTCATTGATTGAGATTGATCAATGTAAGCACCACGATCGGCAGCCATCTGGACG 121297 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234 || || || | |||||||| | || || || | ||| || || |||||| | Sbjct 121298 ATGGTACGCTGAGAGATTTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATG 121357 Query 62235 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291 || | ||| ||||| || ||||||||||| || || |||||||| || | || | Sbjct 121358 TTAGGAACATTTTGAATCGAACCACCATCTGCGATGATTCTATTCTTCATGTTGTCTGAC 121417 Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351 |||| | | || | | | | | | || || || ||||| || |||||| Sbjct 121418 CATAGTCCCATATCAACAAGATCCTTCAACAACCATGGGTTGACGACTTGGAACTCTCCA 121477 Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTT--- 62408 | | || | |||| ||| || || ||| || || | ||| |||| || Sbjct 121478 GCGAGCACACGACGAGAGTAGATGTTGGAGGTGTATGGCT----CGAAGCATTCGTTGAA 121533 Query 62409 CCCAA-AATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAG 62467 ||||| ||||||| || ||||| |||||||| || || | ||||| || | | Sbjct 121534 CCCAAGAATTTGACTGGTACTGGCAGTGGGCATAGGAGCAACAAGCAAACTGTTGCGGAT 121593 Query 62468 ACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAAC 62527 ||| ||| |||||| | || |||| ||||||| ||| ||||| | || || Sbjct 121594 ACCATATTGCTTGATTTGTTGCTTCAGAGAATCCCAATCCCAGAGATCAGTTGGAGTGAC 121653 Query 62528 NNNNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTAT 62583 ||| || ||| || ||||| ||||| | ||||| | Sbjct 121654 ACCCCACATATCGTATTGAAGCTCACCCTTCGAGACTGG----AGATCCCTCGTATGTCT 121709 Query 62584 CGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGG 62643 |||||||||| ||||| ||| || ||| || || || ||| || || | Sbjct 121710 CGTATGGTCCAAGCTTCTTAGCGAGATCAACGGAAGCAGTCAAAGCGGCGTGGTAGATAG 121769 Query 62644 TTTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTA-TCAAATGGATAATTTAA 62701 | || ||||||| | || |||| |||| || |||| | || ||||| | | Sbjct 121770 TCTCAAAGATCTGGATGTTGAGATGCTTGGCCT--CAGGTGACTCGAATGG-CAGACGCA 121826 Query 62702 GAG-AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62760 ||| | || | || || | ||||||||||||| | | |||||||| || | | Sbjct 121827 GAGCCAAGAAGACATCAGCAAGACCTTGAACACCAAGAGCAATAGGTCTGTGACGGAAGT 121886 Query 62761 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62820 | || | | |||||||||| || || || || | || || || || || || || Sbjct 121887 TGGATTTCTTTGCTTCTGGAACTGGGTAGTAGTTGACCTCGATGATCTTGTTCAGGTTCT 121946 Query 62821 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATTACA- 62879 |||| | || | | || || | || || | || ||| | || | | || || Sbjct 121947 TGACCACAACCTGGCAGACCTCGTGGAGCTTCTGGAAGTCATAGGTACCGT-TGTT-CAT 122004 Query 62880 ---AAC--ATGT-TCAAG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC 62932 ||| | || ||| || | ||||||| ||||| || ||||||| | | Sbjct 122005 GTCAACGTAGGTGGGAAGCGCCATGGATGCCAAGTTACAGCAAGCGACCTCATCTGGTGC 122064 Query 62933 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTG 62992 | || | | ||||||||||| || || | || || || | ||| | || Sbjct 122065 GGAGTACTCGACAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTG 122124 Query 62993 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 63052 || |||||| ||| || |||||||| || || ||||| || | ||||| || | || Sbjct 122125 GTTGCTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTG 122184 Query 63053 AGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTT 63111 | ||| | ||| | | ||| | | || | |||| | || | ||| | |||| Sbjct 122185 GGCTTCGAGAATGGAGTACCA-AAGTTTCTGTGCCT---TGATGGTCTTGCGAC-CCTTG 122239 Query 63112 CTCT----TTCGTA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 63165 | || || || | ||||| | | ||||| || || || | |||| | | Sbjct 122240 CCCTCAGCCTCATACTTCTCGTATAGAGCC--TCGAATTCATCACCATAGACATCTGCAA 122297 Query 63166 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT---CACTCGTT 63222 || || || || | || ||||||| | ||| | | ||| ||| || || | Sbjct 122298 GACCTGGGCACTCGTTGGGGCACATCAGTGTCCA---TGTGCCATTCTTTTCAACACGCT 122354 Query 63223 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63282 |||| || ||||| || ||||| ||||| || ||||| | | | | ||| || | Sbjct 122355 TCATGAACAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCT 122414 Query 63283 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63342 | || ||| ||| ||||| ||| || | | || ||| | ||||| || || | || Sbjct 122415 TGCCGTGATTTTTTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGT 122474 Query 63343 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63402 | ||||| | | ||||| || |||||||| ||||| || | ||||| || ||||| | Sbjct 122475 AGATGGCGAATGCACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGT 122534 Query 63403 TATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGC 63462 | | ||||| | ||| |||| |||||||| || | || || || || | || || Sbjct 122535 TGAACACTCTGAGCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAG 122594 Query 63463 TTCCACTGGCACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63518 ||| |||| ||||| | || |||| ||||| || || || || | |||||| Sbjct 122595 CTCCGGTGGCTCGAATTCTGTGGAC--ATTG--AGACCGATACCACCAGCATTCTTAGAG 122650 Query 63519 ATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTA 63578 || | || || || | |||||| |||||||| || || |||||||| |||||| | Sbjct 122651 ATCATGGCACAAGTCTTGAGCGTGTCGTAGATACCATCAATACTATCATCCTTCATGTCA 122710 Query 63579 AGTAGAAAACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGA 63637 | || || || ||| | || ||| | | || || ||| || | || || || Sbjct 122711 ATTAAGAAGCACGAAGAAAGTT-GTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGA 122769 Query 63638 AGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC 63697 |||||| || || |||| | || | || || || |||||||| |||| || ||||| Sbjct 122770 AGCGTGTGTGAAGTATTTGCCTGACATCAGGTTATATGTCTCAATTGCTGCCTCGATATC 122829 Query 63698 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 63757 | ||||| || ||||| |||||||| | ||||||||| || | ||| ||| || Sbjct 122830 CTCGCCGTGAATGCCAACTGCTACACGCATGATCATGTGCTGCGGGCGTTCGCAGATTTT 122889 Query 63758 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 63817 | | | | | ||| ||| ||| | || || ||||| || || | ||| Sbjct 122890 GCCATCGAGGCGGAGAAGGTATGATCGTTCGAGGGTCTTGAAACCGAAGTATTGGTAGTT 122949 Query 63818 AAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTT 63852 |||||||| ||||| | |||| |||| ||||||| Sbjct 122950 GAAGTCTCGATCGTAGACAATAGCCGAATTGAGTT 122984 >seq887 Length=503426 Score = 105 bits (116), Expect = 8e-18 Identities = 285/436 (65%), Gaps = 0/436 (0%) Strand=Plus/Minus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 |||||||| ||||| ||||| || || || || || || || || | | || || || Sbjct 202506 TTTTGGTAATCACCAACACGCTTCTCAAAGAAGTTTGTCTTGCCGGCAAGAGAGATGTTC 202447 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 |||||||| || || || |||| | || || | ||| | || | || | Sbjct 202446 TCCATGAAGTCGAATGGGTTGGCAGATTTGTAGACTTTGTCGTTGCCAAGGGCAAGGAGA 202387 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 | | ||| || || || || || ||| ||||||| | | ||||| || | ||| Sbjct 202386 AGACGATCAGCAACAAACTCAATGTATTGCTTCATCAGGTTGGAGTTCATGCCGAGAAGA 202327 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 | ||||||||| | || | ||| || || || || || || || || || | | Sbjct 202326 GCACAAGGAAGAGCCTCGGTCAAAAACTCCTGCTCGATTTCAACAGCCTCAGTGATGACA 202267 Query 33253 GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAA 33312 | ||| | || | || || ||||| || || || | | || || || Sbjct 202266 TCTTGAACTGCTTGCTTGCTTGGGCGATGCTTCAAGTGAGAGAAGAGGAGGCAAGCAAAG 202207 Query 33313 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 33372 || ||| ||||||||||| | | ||||| |||||||| || || ||||||| ||| Sbjct 202206 TCAGTGTGAAGACCCTCGTCACGAGAAATTAACTCGTTGGAGAAGGTAAGTCCGGCCATG 202147 Query 33373 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCT 33432 ||||||||||| || | ||| || || || |||||||| ||| |||||||| || || Sbjct 202146 AGGCCACGCTTCTTCAACCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATACCCTCA 202087 Query 33433 ACTGCAGCAAAGGCAA 33448 || || || || |||| Sbjct 202086 ACGGCGGCGAATGCAA 202071 Score = 84.2 bits (92), Expect = 3e-11 Identities = 196/294 (67%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624 || |||| || ||||||||||| || || | || || || ||||| || || Sbjct 201903 TCCTTAATGTATGTATCGATCAACAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATG 201844 Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684 || || ||||||||||| || | ||||| | ||| || |||||| || || || || Sbjct 201843 ATTTGGAATCCGTAGAAGCACCGTGCCTCTGGAATTTGGACTTCTCCACTGAAGCGCTCG 201784 Query 33685 GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33744 |||| || || || || || || || ||| || || || || | || || || Sbjct 201783 ACCAAGTTCTCGTTAACAATACCATCGGAGGCGGCGAAGAAGGCAAGAACGTGAGAAATG 201724 Query 33745 AAATATTTTTCGTC----TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATC 33800 || ||| ||||| | | ||| | || ||||| |||| | || || || | || Sbjct 201723 AAGTATCGCTCGTCATCATTGAGTTTG-TTGTTCCAGTCATGAAGGTCCTTGGACAGGTC 201665 Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854 | || || | ||||| ||||||||||| ||||| || ||||| | |||||| Sbjct 201664 AATCTCCTCTGCGGTCCAGAATGATGCCTCGGCCTTCTTGTACATCTGCCAGAT 201611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622939997173000