Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq411 132 5e-26 seq61 96.9 3e-15 >seq411 Length=256942 Score = 132 bits (146), Expect = 5e-26 Identities = 433/653 (66%), Gaps = 31/653 (5%) Strand=Plus/Plus Query 148238 CTTGCCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTT 148297 |||||| || ||||| || || ||||| || |||||||||| | |||||| ||| Sbjct 122236 CTTGCCCTCAGCCTCATACTTCTCGTATAGAGCCTCGAATTCATCACCATAGACATCTGC 122295 Query 148298 TAAACCGGGACACTCGTCGGGGCACATCAATGACCATTTCCC-TCCTGTCTTTACCCTCT 148356 | ||| || ||||||| ||||||||||| || |||| | || | || | | || | || Sbjct 122296 AAGACCTGGGCACTCGTTGGGGCACATCAGTGTCCATGTGCCATTCTTT-TCAACACGCT 122354 Query 148357 TCATAAACAGATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGC-----CTTCATATC 148411 |||| |||||||| || |||| | || | | ||||| ||||| |||| | | Sbjct 122355 TCATGAACAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTT--C 122412 Query 148412 CTCGGCACCCATATTGCGCTTTAGATCCaaaaaagta----aaaaCGTCTGCGTGCCAAG 148467 || | | | || || ||||| || ||| ||||| ||||||||||| | Sbjct 122413 CTTGCCGTGATTTTTTCGG---AGATC----AAGGTACTCGAAAACATCTGCGTGCCATG 122465 Query 148468 GCTCGATGTATACGGTCATGGCGCCTT-TC-CTT-TTACCTCCTTGATCGACATGGCGTA 148524 |||||| ||| | || | || || || ||| || || || || || |||| | | Sbjct 122466 GCTCGAGGTAGATGGCGAATGCACCAGGTCGCTTGTTTCCACCCTGGTCAACATATC-TG 122524 Query 148525 GCA-TGCTATTAAAAACACGCAATGCAGGTCCCAATCCCGCCGCAGTT-CCGTTTGTGGA 148582 ||| || | || || || | | ||| | | | ||| | |||| ||||||||| Sbjct 122525 GCAGTGTTGTTGAACACTCTGAGCATAGGAACGA-TACCGTTGGAGTTGCCGTTTGTGCC 122583 Query 148583 TTCAATTTTACTATTGGTGGCGCGAATT-TGAGTGACATTCAGGCCGATGCCGCCTCCGT 148641 |||| | | |||||| |||||| || | |||||| || ||||| || || | | Sbjct 122584 AGCAATGTAAGCTCCGGTGGCTCGAATTCTGTG-GACATTGAGACCGATACCACCAGCAT 122642 Query 148642 GTTTAGATATCATGGCACAATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTT 148701 ||||| |||||||||||| ||||| || | ||||| || | |||||| || || | Sbjct 122643 TCTTAGAGATCATGGCACAAGTCTTGAGCGTGTCGTAGATACCATCAATACTATCATCCT 122702 Query 148702 GAATGTTAAGCAGGTAGCACGATGACATTTGAGGCATTTTCATGCCAGACGAAAATAGAG 148761 |||| || | | ||||||| || | ||| | | | |||| | | || || | Sbjct 122703 TCATGTCAATTAAGAAGCACGAAGAAAGTTGTGCCTGTGGTGTGCCGGCAGCGAAGAGTG 122762 Query 148762 TTGGACTAGCGTGAGTGAACAGCTTTGCCCG-CATCAATCTATAGGATTCGATAGCGCTT 148820 |||| |||||| ||||| |||||| | ||||| |||| | || || || Sbjct 122763 TTGGCGAAGCGTGTGTGAA-GTATTTGCCTGACATCAGGTTATATGTCTCAATTGCTGCC 122821 Query 148821 TCGATGTCATCACCATGAATCTGTAGAGCTACACGCATCAGCATGTGTTGAGG 148873 ||||| || || || ||||| | ||||||||||| | |||||| || || Sbjct 122822 TCGATATCCTCGCCGTGAATGCCAACTGCTACACGCATGATCATGTGCTGCGG 122874 >seq61 Length=91600 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | || || ||| | |||||| |||| | || || Sbjct 25791 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCG 25850 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| |||||| ||||| ||||| || || || || || Sbjct 25851 GACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGCATTCCACCTGACCAG 25910 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || || | || ||||| ||||| ||||| | | | | || |||||| ||| Sbjct 25911 CAACGTCTAATCTTCGCTGGCAAGCAACTTGAAGACGGCCGCACCCTCTCCGACTACAAC 25970 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 || || || || || ||| | ||||| |||||| | || | |||||| Sbjct 25971 ATCCAGAAGGAGTCAACTCTTCATCTCGTCCTGCGTCTGCGTGGAGGA 26018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478656865466000