Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq411 132 5e-26
seq61 96.9 3e-15
>seq411
Length=256942
Score = 132 bits (146), Expect = 5e-26
Identities = 433/653 (66%), Gaps = 31/653 (5%)
Strand=Plus/Plus
Query 148238 CTTGCCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTT 148297
|||||| || ||||| || || ||||| || |||||||||| | |||||| |||
Sbjct 122236 CTTGCCCTCAGCCTCATACTTCTCGTATAGAGCCTCGAATTCATCACCATAGACATCTGC 122295
Query 148298 TAAACCGGGACACTCGTCGGGGCACATCAATGACCATTTCCC-TCCTGTCTTTACCCTCT 148356
| ||| || ||||||| ||||||||||| || |||| | || | || | | || | ||
Sbjct 122296 AAGACCTGGGCACTCGTTGGGGCACATCAGTGTCCATGTGCCATTCTTT-TCAACACGCT 122354
Query 148357 TCATAAACAGATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGC-----CTTCATATC 148411
|||| |||||||| || |||| | || | | ||||| ||||| |||| | |
Sbjct 122355 TCATGAACAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTT--C 122412
Query 148412 CTCGGCACCCATATTGCGCTTTAGATCCaaaaaagta----aaaaCGTCTGCGTGCCAAG 148467
|| | | | || || ||||| || ||| ||||| ||||||||||| |
Sbjct 122413 CTTGCCGTGATTTTTTCGG---AGATC----AAGGTACTCGAAAACATCTGCGTGCCATG 122465
Query 148468 GCTCGATGTATACGGTCATGGCGCCTT-TC-CTT-TTACCTCCTTGATCGACATGGCGTA 148524
|||||| ||| | || | || || || ||| || || || || || |||| | |
Sbjct 122466 GCTCGAGGTAGATGGCGAATGCACCAGGTCGCTTGTTTCCACCCTGGTCAACATATC-TG 122524
Query 148525 GCA-TGCTATTAAAAACACGCAATGCAGGTCCCAATCCCGCCGCAGTT-CCGTTTGTGGA 148582
||| || | || || || | | ||| | | | ||| | |||| |||||||||
Sbjct 122525 GCAGTGTTGTTGAACACTCTGAGCATAGGAACGA-TACCGTTGGAGTTGCCGTTTGTGCC 122583
Query 148583 TTCAATTTTACTATTGGTGGCGCGAATT-TGAGTGACATTCAGGCCGATGCCGCCTCCGT 148641
|||| | | |||||| |||||| || | |||||| || ||||| || || | |
Sbjct 122584 AGCAATGTAAGCTCCGGTGGCTCGAATTCTGTG-GACATTGAGACCGATACCACCAGCAT 122642
Query 148642 GTTTAGATATCATGGCACAATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTT 148701
||||| |||||||||||| ||||| || | ||||| || | |||||| || || |
Sbjct 122643 TCTTAGAGATCATGGCACAAGTCTTGAGCGTGTCGTAGATACCATCAATACTATCATCCT 122702
Query 148702 GAATGTTAAGCAGGTAGCACGATGACATTTGAGGCATTTTCATGCCAGACGAAAATAGAG 148761
|||| || | | ||||||| || | ||| | | | |||| | | || || |
Sbjct 122703 TCATGTCAATTAAGAAGCACGAAGAAAGTTGTGCCTGTGGTGTGCCGGCAGCGAAGAGTG 122762
Query 148762 TTGGACTAGCGTGAGTGAACAGCTTTGCCCG-CATCAATCTATAGGATTCGATAGCGCTT 148820
|||| |||||| ||||| |||||| | ||||| |||| | || || ||
Sbjct 122763 TTGGCGAAGCGTGTGTGAA-GTATTTGCCTGACATCAGGTTATATGTCTCAATTGCTGCC 122821
Query 148821 TCGATGTCATCACCATGAATCTGTAGAGCTACACGCATCAGCATGTGTTGAGG 148873
||||| || || || ||||| | ||||||||||| | |||||| || ||
Sbjct 122822 TCGATATCCTCGCCGTGAATGCCAACTGCTACACGCATGATCATGTGCTGCGG 122874
>seq61
Length=91600
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | ||||| || || | || || ||| | |||||| |||| | || ||
Sbjct 25791 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCG 25850
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||||||||| | ||||| |||||| ||||| ||||| || || || || ||
Sbjct 25851 GACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGCATTCCACCTGACCAG 25910
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
||| | || || | || ||||| ||||| ||||| | | | | || |||||| |||
Sbjct 25911 CAACGTCTAATCTTCGCTGGCAAGCAACTTGAAGACGGCCGCACCCTCTCCGACTACAAC 25970
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996
|| || || || || ||| | ||||| |||||| | || | ||||||
Sbjct 25971 ATCCAGAAGGAGTCAACTCTTCATCTCGTCCTGCGTCTGCGTGGAGGA 26018
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478656865466000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |